Clone Sequence Records
BO15138.3prime Sequence
841 bp (728 high quality bases) assembled on 2006-06-16
> BO15138.3prime
ATGGTCTAGAAAGCTTGCATATACATCATAGCCATACATGGGTGCCTCCA
TGTAAGCCTTCTGCTGGTCCGTGGAATTGCGACGGATTCTCCGGCCAATG
GGCTCCAAGTCTGCATAGCATTTGGGAAAGACACGTTCCACAGCAGCGAC
GGCATCTGCTTTGCTAATATTGCGAACAGCGAGCACGGAAGCTAGGGCTT
TGGACTTGACGCAGTTCTGATGCGCTTCCTTGACATTAAATGGCGAGGCA
TCTCCTTGGAACATGGCGCTCAAGAAGGAGCAATGCGCCAGGTTTGCCGC
CCTGATCTCTGTGCAGGCCAGGTGGTCCACGTTGCGGAAGTCCATGTCGT
TATTGCAGTAGTCGAACATGTGAATCATCTCGTGCGTTAGCACTCCATGG
ACCATGCTCTTGTTCCTGGCCATATTCTGGCAGACCACGATCTGGTTGAG
CTTGGGATCGTAACCGCCGGTGACTGTGGGGTCGCACACCTCGCATGAGA
TGTGTCGGCGCAGATCGATGGGACAACCGGAACTTTTCAGTGCTCCCATC
ATCAGTTTGACCAGCGGACCATTTTTGACACACCAGTACACATTCTCCTC
GCACTTGAAACGATCAATGTTCTCCTGCCCCTCCAAGCCGAACAGGACTC
GTGTCCATTTGGGCTTGAAGGTTTCGCCCCTTCGCTCCGGATAAAGGTCG
TAGCCCCAATCCTTTTGAGCAGTGGTGGTTTCTTCGGTGCTCGTCTCCTT
ACTGGCAGATGCTTTTTCAGTCTTTGCATTTTGTTTTTCTTGCGCTGCGC
CGGTGATGGCTTCTATTGCCTCGGGCGCTGTTGCCTCTTTG
BO15138.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-PA | 852 | CG5131-RA | 5..849 | 863..19 | 4200 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-RA | 1051 | CG5131-RA | 104..926 | 841..19 | 4115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17484604..17485228 | 841..217 | 3125 | 100 | Minus |
2L | 23513712 | 2L | 17485298..17485499 | 220..19 | 1010 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:51:31 has no hits.
BO15138.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:28 Download gff for
BO15138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-PA | 1..852 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:52 Download gff for
BO15138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-PA | 1..852 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:43:54 Download gff for
BO15138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 104..937 | 10..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:51:25 Download gff for
BO15138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 104..937 | 10..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:51:25 Download gff for
BO15138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17484604..17485228 | 217..841 | 100 | -> | Minus |
2L | 17485302..17485510 | 10..216 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:43:54 Download gff for
BO15138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17484604..17485228 | 217..841 | 100 | -> | Minus |
arm_2L | 17485302..17485510 | 10..216 | 98 | | Minus |
BO15138.5prime Sequence
821 bp (785 high quality bases) assembled on 2006-06-16
> BO15138.5prime
GAAGTTATCAGTCGACATGGAGTTCCTGACTAAAGTGTGGGCCAAAGAGG
CAACAGCGCCCGAGGCAATAGAAGCCATCACCGGCGCAGCGCAAGAAAAA
CAAAATGCAAAGACTGAAAAAGCATCTGCCAGTAAGGAGACGAGCACCGA
AGAAACCACCACTGCTCAAAAGGATTGGGGCTACGACCTTTATCCGGAGC
GAAGGGGCGAAACCTTCAAGCCCAAATGGACACGAGTCCTGTTCGGCTTG
GAGGGGCAGGAGAACATTGATCGTTTCAAGTGCGAGGAGAATGTGTACTG
GTGTGTCAAAAATGGTCCGCTGGTCAAACTGATGATGGGAGCACTGAAAA
GTTCCGGTTGTCCCATCGATCTGCGCCGACACATCTCATGCGAGGTGTGC
GACCCCACAGTCACCGGCGGTTACGATCCCAAGCTCAACCAGATCGTGGT
CTGCCAGAATATGGCCAGGAACAAGAGCATGGTCCATGGAGTGCTAACGC
ACGAGATGATTCACATGTTCGACTACTGCAATAACGACATGGACTTCCGC
AACGTGGACCACCTGGCCTGCACAGAGATCAGGGCGGCAAACCTGGCGCA
TTGCTCCTTCTTGAGCGCCATGTTCCAAGGAGATGCCTCGCCATTTAATG
TCAAGGAAGCGCATCAGAACTGCGTCAAGTCCAAAGCCCTAGCTTCCGTG
CTCGCTGTTCGCAATATTAGCAAAGCAGATGCCGTCGCTGCTGTGGAACG
TGTCTTTTCCAAATGCTATGCAGACTTGGAGCCCATTGGCCGGAGAATCC
GTCGCAATTCCACGGACCAGC
BO15138.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-PA | 852 | CG5131-RA | 1..805 | 17..821 | 4000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-RA | 1051 | CG5131-RA | 78..882 | 17..821 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17484578..17485228 | 17..667 | 3255 | 100 | Plus |
2L | 23513712 | 2L | 17485298..17485455 | 664..821 | 775 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:22:22 has no hits.
BO15138.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:39 Download gff for
BO15138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:22 Download gff for
BO15138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 78..882 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:04 Download gff for
BO15138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 78..882 | 17..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:04 Download gff for
BO15138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17484578..17485228 | 17..667 | 100 | -> | Plus |
2L | 17485302..17485455 | 668..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:22 Download gff for
BO15138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17484578..17485228 | 17..667 | 100 | -> | Plus |
arm_2L | 17485302..17485455 | 668..821 | 99 | | Plus |
BO15138.complete Sequence
883 bp (883 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633357
> BO15138.complete
GAAGTTATCAGTCGACATGGAGTTCCTGACTAAAGTGTGGGCCAAAGAGG
CAACAGCGCCCGAGGCAATAGAAGCCATCACCGGCGCAGCGCAAGAAAAA
CAAAATGCAAAGACTGAAAAAGCATCTGCCAGTAAGGAGACGAGCACCGA
AGAAACCACCACTGCTCAAAAGGATTGGGGCTACGACCTTTATCCGGAGC
GAAGGGGCGAAACCTTCAAGCCCAAATGGACACGAGTCCTGTTCGGCTTG
GAGGGGCAGGAGAACATTGATCGTTTCAAGTGCGAGGAGAATGTGTACTG
GTGTGTCAAAAATGGTCCGCTGGTCAAACTGATGATGGGAGCACTGAAAA
GTTCCGGTTGTCCCATCGATCTGCGCCGACACATCTCATGCGAGGTGTGC
GACCCCACAGTCACCGGCGGTTACGATCCCAAGCTCAACCAGATCGTGGT
CTGCCAGAATATGGCCAGGAACAAGAGCATGGTCCATGGAGTGCTAACGC
ACGAGATGATTCACATGTTCGACTACTGCAATAACGACATGGACTTCCGC
AACGTGGACCACCTGGCCTGCACAGAGATCAGGGCGGCAAACCTGGCGCA
TTGCTCCTTCTTGAGCGCCATGTTCCAAGGAGATGCCTCGCCATTTAATG
TCAAGGAAGCGCATCAGAACTGCGTCAAGTCCAAAGCCCTAGCTTCCGTG
CTCGCTGTTCGCAATATTAGCAAAGCAGATGCCGTCGCTGCTGTGGAACG
TGTCTTTCCCAAATGCTATGCAGACTTGGAGCCCATTGGCCGGAGAATCC
GTCGCAATTCCACGGACCAGCAGAAGGCTTACATGGAGGCACCCATGTAT
GGCTATGATGTATATGCAAGCTTTCTAGACCAT
BO15138.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-RA | 852 | CG5131-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-RA | 1051 | CG5131-RA | 78..926 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17484578..17485228 | 17..667 | 3255 | 100 | Plus |
2L | 23513712 | 2L | 17485298..17485499 | 664..865 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:05:04 has no hits.
BO15138.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:03 Download gff for
BO15138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 1..852 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:19 Download gff for
BO15138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 61..920 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:14:11 Download gff for
BO15138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 78..926 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:03 Download gff for
BO15138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 61..920 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:26 Download gff for
BO15138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 78..926 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:26 Download gff for
BO15138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17484578..17485228 | 17..667 | 100 | -> | Plus |
2L | 17485302..17485499 | 668..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:14:11 Download gff for
BO15138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17484578..17485228 | 17..667 | 100 | -> | Plus |
arm_2L | 17485302..17485499 | 668..867 | 99 | | Plus |
BO15138.pep Sequence
Translation from 16 to 883
> BO15138.pep
MEFLTKVWAKEATAPEAIEAITGAAQEKQNAKTEKASASKETSTEETTTA
QKDWGYDLYPERRGETFKPKWTRVLFGLEGQENIDRFKCEENVYWCVKNG
PLVKLMMGALKSSGCPIDLRRHISCEVCDPTVTGGYDPKLNQIVVCQNMA
RNKSMVHGVLTHEMIHMFDYCNNDMDFRNVDHLACTEIRAANLAHCSFLS
AMFQGDASPFNVKEAHQNCVKSKALASVLAVRNISKADAVAAVERVFPKC
YADLEPIGRRIRRNSTDQQKAYMEAPMYGYDVYASFLDH
BO15138.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-PA | 283 | CG5131-PA | 1..283 | 1..283 | 1509 | 100 | Plus |