Clone Sequence Records
BO15139.3prime Sequence
767 bp (730 high quality bases) assembled on 2006-06-16
> BO15139.3prime
ATGGTCTAGAAAGCTTGCGTAGACGGTTCCCGAGATTCCGGAACCGTAGT
TATAGCCCGATCCGATGGGCGGCACTCCGCCCAAAGCGCCCAAGCCGCCG
CCCACCACGCTGTTGCCATAGTTGCTCGTATAGTAACTGGATGGATAGCC
ACCAGCGCCGAATCGGGTGTTGTAGTACGGATACCCAGTGCCGGCTCCAG
CGCCCAGCCTGCTGTTGTAGTATGACAGGGCGTATGGATTCGAGTTGTAG
GAGCCACCATAACCACTAAGTCCCGATCCATAGCCACCAAGAGCGGATCC
ATAGCCACCCAAAGCGGATCCATAGCCGCCCAGAGTGGATCCATAGCCTC
CGTATCCGGCCACTGCAGCACCATCTAATCCACCCAGAGCTCGCGAGCTG
TACGGATTGTAGTAGCTGTCCACGCCAACGCCGACGCCACTGCCGTACGC
TCCTCCATAGCCGGCTCCCAGGCCAGAGGCATAGCCGCCGTATCCTGCGC
CATATCCGGCGCCATAGCCGCCGTATCCCGCGCCGTAGCCCGCTCCGTAG
CCACCGTATCCACCAACATAGCGCTTCTCCTGCTTCTTATCCTGCAGCGG
GGCATAGCTGCTGGCGGCGCTCACCTGATCCTCCACGGCCACCGCATCCG
GTGCCGATGCGGATGCCACCTGCTCCAGGTCAGAATCCGCCGCGTCCTGG
GCATAGGCACTCAGCACCAGACTGGTTGCTATCAGGATAAAAAAGCACTT
CATGTCGACTGATAACT
BO15139.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-PA | 738 | CG2157-RA | 1..735 | 753..19 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-RA | 965 | CG2157-RA | 95..831 | 755..19 | 3685 | 100 | Minus |
CG2157-RB | 1004 | CG2157-RB | 95..837 | 755..19 | 3615 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10869737..10870103 | 741..375 | 1835 | 100 | Minus |
X | 23542271 | X | 10870181..10870538 | 376..19 | 1790 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:57:55 has no hits.
BO15139.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:39 Download gff for
BO15139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-PA | 1..738 | 18..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:49 Download gff for
BO15139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 91..831 | 19..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:31 Download gff for
BO15139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 91..831 | 19..761 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:31 Download gff for
BO15139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10869737..10870103 | 375..741 | 100 | -> | Minus |
X | 10870183..10870538 | 19..374 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:49 Download gff for
BO15139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10763770..10764136 | 375..741 | 100 | -> | Minus |
arm_X | 10764216..10764571 | 19..374 | 100 | | Minus |
BO15139.5prime Sequence
767 bp (737 high quality bases) assembled on 2006-06-16
> BO15139.5prime
GAAGTTATCAGTCGACATGAAGTGCTTTTTTATCCTGATAGCAACCAGTC
TGGTGCTGAGTGCCTATGCCCAGGACGCGGCGGATTCTGACCTGGAGCAG
GTGGCATCCGCATCGGCACCGGATGCGGTGGCCGTGGAGGATCAGGTGAG
CGCCGCCAGCAGCTATGCCCCGCTGCAGGATAAGAAGCAGGAGAAGCGCT
ATGTTGGTGGATACGGTGGCTACGGAGCGGGCTACGGCGCGGGATACGGC
GGCTATGGCGCCGGATATGGCGCAGGATACGGCGGCTATGCCTCTGGCCT
GGGAGCCGGCTATGGAGGAGCGTACGGCAGTGGCGTCGGCGTTGGCGTGG
ACAGCTACTACAATCCGTACAGCTCGCGAGCTCTGGGTGGATTAGATGGT
GCTGCAGTGGCCGGATACGGAGGCTATGGATCCACTCTGGGCGGCTATGG
ATCCGCTTTGGGTGGCTATGGATCCGCTCTTGGTGGCTATGGATCGGGAC
TTAGTGGTTATGGTGGCTCCTACAACTCGAATCCATACGCCCTGTCATAC
TACAACAGCAGGCTGGGCGCTGGAGCCGGCACTGGGTATCCGTACTACAA
CACCCGATTCGGCGCTGGTGGCTATCCATCCAGTTACTATACGAGCAACT
ATGGCAACAGCGTGGTGGGCGGCGGCTTGGGCGCTTTGGGCGGAGTGCCG
CCCATCGGATCGGGCTATAACTACGGTTCCGGAATCTCGGGAACCGTCTA
CGCAAGCTTTCTAGACC
BO15139.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-PA | 738 | CG2157-RA | 1..735 | 17..751 | 3600 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-RA | 965 | CG2157-RA | 95..831 | 15..751 | 3685 | 100 | Plus |
CG2157-RB | 1004 | CG2157-RB | 95..837 | 15..751 | 3615 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10869737..10870103 | 29..395 | 1835 | 100 | Plus |
X | 23542271 | X | 10870181..10870538 | 394..751 | 1790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:18:27 has no hits.
BO15139.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:29 Download gff for
BO15139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-PA | 1..738 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:53 Download gff for
BO15139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-PA | 1..738 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:58:05 Download gff for
BO15139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 91..831 | 9..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:03 Download gff for
BO15139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 91..831 | 9..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:03 Download gff for
BO15139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10869737..10870103 | 29..395 | 100 | -> | Plus |
X | 10870183..10870538 | 396..751 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:58:05 Download gff for
BO15139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10763770..10764136 | 29..395 | 100 | -> | Plus |
arm_X | 10764216..10764571 | 396..751 | 100 | | Plus |
BO15139.complete Sequence
769 bp (769 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633358
> BO15139.complete
GAAGTTATCAGTCGACATGAAGTGCTTTTTTATCCTGATAGCAACCAGTC
TGGTGCTGAGTGCCTATGCCCAGGACGCGGCGGATTCTGACCTGGAGCAG
GTGGCATCCGCATCGGCACCGGATGCGGTGGCCGTGGAGGATCAGGTGAG
CGCCGCCAGCAGCTATGCCCCGCTGCAGGATAAGAAGCAGGAGAAGCGCT
ATGTTGGTGGATACGGTGGCTACGGAGCGGGCTACGGCGCGGGATACGGC
GGCTATGGCGCCGGATATGGCGCAGGATACGGCGGCTATGCCTCTGGCCT
GGGAGCCGGCTATGGAGGAGCGTACGGCAGTGGCGTCGGCGTTGGCGTGG
ACAGCTACTACAATCCGTACAGCTCGCGAGCTCTGGGTGGATTAGATGGT
GCTGCAGTGGCCGGATACGGAGGCTATGGATCCACTCTGGGCGGCTATGG
ATCCGCTTTGGGTGGCTATGGATCCGCTCTTGGTGGCTATGGATCGGGAC
TTAGTGGTTATGGTGGCTCCTACAACTCGAATCCATACGCCCTGTCATAC
TACAACAGCAGGCTGGGCGCTGGAGCCGGCACTGGGTATCCGTACTACAA
CACCCGATTCGGCGCTGGTGGCTATCCATCCAGTTACTATACGAGCAACT
ATGGCAACAGCGTGGTGGGCGGCGGCTTGGGCGCTTTGGGCGGAGTGCCG
CCCATCGGATCGGGCTATAACTACGGTTCCGGAATCTCGGGAACCGTCTA
CGCAAGCTTTCTAGACCAT
BO15139.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-RA | 738 | CG2157-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
CG2157-RB | 744 | CG2157-PB | 1..741 | 17..751 | 3580 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-RA | 965 | CG2157-RA | 95..831 | 15..751 | 3685 | 100 | Plus |
CG2157-RB | 1004 | CG2157-RB | 95..837 | 15..751 | 3590 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10869737..10870103 | 29..395 | 1835 | 100 | Plus |
X | 23542271 | X | 10870181..10870538 | 394..751 | 1790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:48:19 has no hits.
BO15139.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:05 Download gff for
BO15139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 1..738 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:21 Download gff for
BO15139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 69..809 | 9..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:23:09 Download gff for
BO15139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 97..831 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:05 Download gff for
BO15139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 69..809 | 9..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:15 Download gff for
BO15139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 97..831 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:15 Download gff for
BO15139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10870183..10870538 | 396..753 | 99 | | Plus |
X | 10869737..10870103 | 29..395 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:23:09 Download gff for
BO15139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10763770..10764136 | 29..395 | 100 | -> | Plus |
arm_X | 10764216..10764571 | 396..753 | 99 | | Plus |
BO15139.pep Sequence
Translation from 16 to 769
> BO15139.pep
MKCFFILIATSLVLSAYAQDAADSDLEQVASASAPDAVAVEDQVSAASSY
APLQDKKQEKRYVGGYGGYGAGYGAGYGGYGAGYGAGYGGYASGLGAGYG
GAYGSGVGVGVDSYYNPYSSRALGGLDGAAVAGYGGYGSTLGGYGSALGG
YGSALGGYGSGLSGYGGSYNSNPYALSYYNSRLGAGAGTGYPYYNTRFGA
GGYPSSYYTSNYGNSVVGGGLGALGGVPPIGSGYNYGSGISGTVYASFLD
H
BO15139.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-PA | 245 | CG2157-PA | 1..245 | 1..245 | 1306 | 100 | Plus |
CG2157-PB | 247 | CG2157-PB | 1..247 | 1..245 | 1293 | 99.2 | Plus |
CG17108-PA | 342 | CG17108-PA | 139..331 | 62..247 | 231 | 35.3 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 250..414 | 64..242 | 219 | 38 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 250..414 | 64..242 | 219 | 38 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 306..478 | 64..242 | 211 | 35.7 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 262..424 | 65..242 | 206 | 38.7 | Plus |
CG17108-PA | 342 | CG17108-PA | 17..171 | 64..242 | 205 | 36.3 | Plus |
CG17108-PA | 342 | CG17108-PA | 211..340 | 64..191 | 200 | 39.6 | Plus |
CG17108-PA | 342 | CG17108-PA | 46..195 | 64..243 | 198 | 37.2 | Plus |
CG17108-PA | 342 | CG17108-PA | 68..236 | 65..242 | 196 | 34.8 | Plus |
CG17108-PA | 342 | CG17108-PA | 79..266 | 65..241 | 190 | 32.8 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 342..532 | 64..242 | 190 | 34.5 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 235..356 | 70..239 | 177 | 39.5 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 429..601 | 64..236 | 176 | 34.6 | Plus |
CG17108-PA | 342 | CG17108-PA | 233..341 | 65..170 | 151 | 38.8 | Plus |