Clone Sequence Records
BO15142.3prime Sequence
521 bp (521 high quality bases) assembled on 2006-06-16
> BO15142.3prime
ATGGTCTAGAAAGCTTGCGAAGGGCCAACAATAGGAATAAGTCAGGAATG
GTTTGCTGTTCTCCGCTGAGAATTTCAGCAGGTGGCACAAACTGTAGAAT
CTCTCTGTGGCAATCGATCCTGGCTTTCGATTGCATCCACAGGGAGCCGG
AATGGGGAATTCAGCAACCACGGGGAAACCCACGCTGCACTTTTTGCAGA
TGAAGGAACGGCAGAGTTCCTCCGTAACGGGCACAAATGGGGATCTACCC
TCCTTTTTGCGCTGGTCGCTCTCGATTTGCATAAGGCATTCGTTTTGGAA
ACAACGGCAGACACAATCCTGAAGAGCCCATTGGTAGTTCCTATAGTAAA
TATTGCATTTACTTGGGACGCTCGTAGAGTTCTTTATTTCGGATTCAATT
TCAGGCTCTGATACTGGTTTTTCTTCGATTTTCGTCTCCTGGACGGCTTG
TCCATGGTGGAACCACGAAACGGCCAATAACAAAAGCAGCAATTTAATAT
TGAACATGTCGACTGATAACT
BO15142.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7596-PA | 492 | Sgs5-RA | 1..489 | 507..19 | 2445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgs5-RA | 636 | CG7596-RA | 27..519 | 511..19 | 2465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17595388..17595659 | 511..240 | 1360 | 100 | Minus |
3R | 32079331 | 3R | 17595716..17595904 | 239..51 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:26:50 has no hits.
BO15142.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:40 Download gff for
BO15142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7596-PA | 1..492 | 15..507 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:53 Download gff for
BO15142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 22..523 | 14..519 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:00 Download gff for
BO15142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 22..523 | 14..519 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:00 Download gff for
BO15142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17595964..17595999 | 14..50 | 94 | | Minus |
3R | 17595383..17595659 | 240..519 | 98 | -> | Minus |
3R | 17595716..17595904 | 51..239 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:53 Download gff for
BO15142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13421105..13421381 | 240..519 | 98 | -> | Minus |
arm_3R | 13421438..13421626 | 51..239 | 100 | -> | Minus |
arm_3R | 13421686..13421721 | 14..50 | 94 | | Minus |
BO15142.5prime Sequence
521 bp (521 high quality bases) assembled on 2006-06-16
> BO15142.5prime
GAAGTTATCAGTCGACATGTTCAATATTAAATTGCTGCTTTTGTTATTGG
CCGTTTCGTGGTTCCACCATGGACAAGCCGTCCAGGAGACGAAAATCGAA
GAAAAACCAGTATCAGAGCCTGAAATTGAATCCGAAATAAAGAACTCTAC
GAGCGTCCCAAGTAAATGCAATATTTACTATAGGAACTACCAATGGGCTC
TTCAGGATTGTGTCTGCCGTTGTTTCCAAAACGAATGCCTTATGCAAATC
GAGAGCGACCAGCGCAAAAAGGAGGGTAGATCCCCATTTGTGCCCGTTAC
GGAGGAACTCTGCCGTTCCTTCATCTGCAAAAAGTGCAGCGTGGGTTTCC
CCGTGGTTGCTGAATTCCCCATTCCGGCTCCCTGTGGATGCAATCGAAAG
CCAGGATCGATTGCCACAGAGAGATTCTACAGTTTGTGCCACCTGCTGAA
ATTCTCAGCGGAGAACAGCAAACCATTCCTGACTTATTCCTATTGTTGGC
CCTTCGCAAGCTTTCTAGACC
BO15142.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7596-PA | 492 | Sgs5-RA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgs5-RA | 636 | CG7596-RA | 27..519 | 13..505 | 2465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17595388..17595659 | 13..284 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 17595716..17595904 | 285..473 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:53:57 has no hits.
BO15142.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:31 Download gff for
BO15142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-PA | 1..492 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:55 Download gff for
BO15142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7596-PA | 1..492 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:17 Download gff for
BO15142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 22..523 | 5..510 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:25 Download gff for
BO15142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 22..523 | 5..510 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:04:25 Download gff for
BO15142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17595716..17595904 | 285..473 | 100 | -> | Plus |
3R | 17595964..17595999 | 474..510 | 94 | | Plus |
3R | 17595383..17595659 | 5..284 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:17 Download gff for
BO15142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13421105..13421381 | 5..284 | 98 | -> | Plus |
arm_3R | 13421438..13421626 | 285..473 | 100 | -> | Plus |
arm_3R | 13421686..13421721 | 474..510 | 94 | | Plus |
BO15142.complete Sequence
523 bp (523 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633359
> BO15142.complete
GAAGTTATCAGTCGACATGTTCAATATTAAATTGCTGCTTTTGTTATTGG
CCGTTTCGTGGTTCCACCATGGACAAGCCGTCCAGGAGACGAAAATCGAA
GAAAAACCAGTATCAGAGCCTGAAATTGAATCCGAAATAAAGAACTCTAC
GAGCGTCCCAAGTAAATGCAATATTTACTATAGGAACTACCAATGGGCTC
TTCAGGATTGTGTCTGCCGTTGTTTCCAAAACGAATGCCTTATGCAAATC
GAGAGCGACCAGCGCAAAAAGGAGGGTAGATCCCCATTTGTGCCCGTTAC
GGAGGAACTCTGCCGTTCCTTCATCTGCAAAAAGTGCAGCGTGGGTTTCC
CCGTGGTTGCTGAATTCCCCATTCCGGCTCCCTGTGGATGCAATCGAAAG
CCAGGATCGATTGCCACAGAGAGATTCTACAGTTTGTGCCACCTGCTGAA
ATTCTCAGCGGAGAACAGCAAACCATTCCTGACTTATTCCTATTGTTGGC
CCTTCGCAAGCTTTCTAGACCAT
BO15142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgs5-RA | 492 | CG7596-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgs5-RA | 636 | CG7596-RA | 27..519 | 13..505 | 2465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17595388..17595659 | 13..284 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 17595716..17595904 | 285..473 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:14:39 has no hits.
BO15142.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:06 Download gff for
BO15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 1..492 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:23 Download gff for
BO15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 1..495 | 15..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:37 Download gff for
BO15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 36..519 | 22..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:06 Download gff for
BO15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 1..495 | 15..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:41 Download gff for
BO15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgs5-RA | 36..519 | 22..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:41 Download gff for
BO15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17595397..17595659 | 22..284 | 100 | -> | Plus |
3R | 17595716..17595904 | 285..473 | 100 | -> | Plus |
3R | 17595964..17595995 | 474..507 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:37 Download gff for
BO15142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13421119..13421381 | 22..284 | 100 | -> | Plus |
arm_3R | 13421438..13421626 | 285..473 | 100 | -> | Plus |
arm_3R | 13421686..13421717 | 474..507 | 94 | | Plus |
BO15142.pep Sequence
Translation from 16 to 523
> BO15142.pep
MFNIKLLLLLLAVSWFHHGQAVQETKIEEKPVSEPEIESEIKNSTSVPSK
CNIYYRNYQWALQDCVCRCFQNECLMQIESDQRKKEGRSPFVPVTEELCR
SFICKKCSVGFPVVAEFPIPAPCGCNRKPGSIATERFYSLCHLLKFSAEN
SKPFLTYSYCWPFASFLDH
BO15142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgs5-PA | 163 | CG7596-PA | 1..163 | 1..163 | 897 | 100 | Plus |
CG7587-PA | 142 | CG7587-PA | 1..142 | 1..160 | 395 | 46.2 | Plus |