Clone BO15142 Report

Search the DGRC for BO15142

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:151
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptSgs5-RA
Protein status:BO15142.pep: validated full length
Sequenced Size:523

Clone Sequence Records

BO15142.3prime Sequence

521 bp (521 high quality bases) assembled on 2006-06-16

> BO15142.3prime
ATGGTCTAGAAAGCTTGCGAAGGGCCAACAATAGGAATAAGTCAGGAATG
GTTTGCTGTTCTCCGCTGAGAATTTCAGCAGGTGGCACAAACTGTAGAAT
CTCTCTGTGGCAATCGATCCTGGCTTTCGATTGCATCCACAGGGAGCCGG
AATGGGGAATTCAGCAACCACGGGGAAACCCACGCTGCACTTTTTGCAGA
TGAAGGAACGGCAGAGTTCCTCCGTAACGGGCACAAATGGGGATCTACCC
TCCTTTTTGCGCTGGTCGCTCTCGATTTGCATAAGGCATTCGTTTTGGAA
ACAACGGCAGACACAATCCTGAAGAGCCCATTGGTAGTTCCTATAGTAAA
TATTGCATTTACTTGGGACGCTCGTAGAGTTCTTTATTTCGGATTCAATT
TCAGGCTCTGATACTGGTTTTTCTTCGATTTTCGTCTCCTGGACGGCTTG
TCCATGGTGGAACCACGAAACGGCCAATAACAAAAGCAGCAATTTAATAT
TGAACATGTCGACTGATAACT

BO15142.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7596-PA 492 Sgs5-RA 1..489 507..19 2445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Sgs5-RA 636 CG7596-RA 27..519 511..19 2465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17595388..17595659 511..240 1360 100 Minus
3R 32079331 3R 17595716..17595904 239..51 945 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:26:50 has no hits.

BO15142.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:40 Download gff for BO15142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7596-PA 1..492 15..507 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:53 Download gff for BO15142.3prime
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 22..523 14..519 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:00 Download gff for BO15142.3prime
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 22..523 14..519 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:00 Download gff for BO15142.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17595964..17595999 14..50 94   Minus
3R 17595383..17595659 240..519 98 -> Minus
3R 17595716..17595904 51..239 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:53 Download gff for BO15142.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13421105..13421381 240..519 98 -> Minus
arm_3R 13421438..13421626 51..239 100 -> Minus
arm_3R 13421686..13421721 14..50 94   Minus

BO15142.5prime Sequence

521 bp (521 high quality bases) assembled on 2006-06-16

> BO15142.5prime
GAAGTTATCAGTCGACATGTTCAATATTAAATTGCTGCTTTTGTTATTGG
CCGTTTCGTGGTTCCACCATGGACAAGCCGTCCAGGAGACGAAAATCGAA
GAAAAACCAGTATCAGAGCCTGAAATTGAATCCGAAATAAAGAACTCTAC
GAGCGTCCCAAGTAAATGCAATATTTACTATAGGAACTACCAATGGGCTC
TTCAGGATTGTGTCTGCCGTTGTTTCCAAAACGAATGCCTTATGCAAATC
GAGAGCGACCAGCGCAAAAAGGAGGGTAGATCCCCATTTGTGCCCGTTAC
GGAGGAACTCTGCCGTTCCTTCATCTGCAAAAAGTGCAGCGTGGGTTTCC
CCGTGGTTGCTGAATTCCCCATTCCGGCTCCCTGTGGATGCAATCGAAAG
CCAGGATCGATTGCCACAGAGAGATTCTACAGTTTGTGCCACCTGCTGAA
ATTCTCAGCGGAGAACAGCAAACCATTCCTGACTTATTCCTATTGTTGGC
CCTTCGCAAGCTTTCTAGACC

BO15142.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7596-PA 492 Sgs5-RA 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
Sgs5-RA 636 CG7596-RA 27..519 13..505 2465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17595388..17595659 13..284 1360 100 Plus
3R 32079331 3R 17595716..17595904 285..473 945 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:53:57 has no hits.

BO15142.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:31 Download gff for BO15142.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgs5-PA 1..492 17..509 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:55 Download gff for BO15142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7596-PA 1..492 17..509 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:17 Download gff for BO15142.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 22..523 5..510 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:25 Download gff for BO15142.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 22..523 5..510 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:04:25 Download gff for BO15142.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17595716..17595904 285..473 100 -> Plus
3R 17595964..17595999 474..510 94   Plus
3R 17595383..17595659 5..284 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:17 Download gff for BO15142.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13421105..13421381 5..284 98 -> Plus
arm_3R 13421438..13421626 285..473 100 -> Plus
arm_3R 13421686..13421721 474..510 94   Plus

BO15142.complete Sequence

523 bp (523 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633359

> BO15142.complete
GAAGTTATCAGTCGACATGTTCAATATTAAATTGCTGCTTTTGTTATTGG
CCGTTTCGTGGTTCCACCATGGACAAGCCGTCCAGGAGACGAAAATCGAA
GAAAAACCAGTATCAGAGCCTGAAATTGAATCCGAAATAAAGAACTCTAC
GAGCGTCCCAAGTAAATGCAATATTTACTATAGGAACTACCAATGGGCTC
TTCAGGATTGTGTCTGCCGTTGTTTCCAAAACGAATGCCTTATGCAAATC
GAGAGCGACCAGCGCAAAAAGGAGGGTAGATCCCCATTTGTGCCCGTTAC
GGAGGAACTCTGCCGTTCCTTCATCTGCAAAAAGTGCAGCGTGGGTTTCC
CCGTGGTTGCTGAATTCCCCATTCCGGCTCCCTGTGGATGCAATCGAAAG
CCAGGATCGATTGCCACAGAGAGATTCTACAGTTTGTGCCACCTGCTGAA
ATTCTCAGCGGAGAACAGCAAACCATTCCTGACTTATTCCTATTGTTGGC
CCTTCGCAAGCTTTCTAGACCAT

BO15142.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sgs5-RA 492 CG7596-PA 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sgs5-RA 636 CG7596-RA 27..519 13..505 2465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17595388..17595659 13..284 1360 100 Plus
3R 32079331 3R 17595716..17595904 285..473 945 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:14:39 has no hits.

BO15142.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:06 Download gff for BO15142.complete
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 1..492 17..509 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:23 Download gff for BO15142.complete
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 1..495 15..510 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:37 Download gff for BO15142.complete
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 36..519 22..507 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:06 Download gff for BO15142.complete
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 1..495 15..510 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:41 Download gff for BO15142.complete
Subject Subject Range Query Range Percent Splice Strand
Sgs5-RA 36..519 22..507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:41 Download gff for BO15142.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17595397..17595659 22..284 100 -> Plus
3R 17595716..17595904 285..473 100 -> Plus
3R 17595964..17595995 474..507 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:37 Download gff for BO15142.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13421119..13421381 22..284 100 -> Plus
arm_3R 13421438..13421626 285..473 100 -> Plus
arm_3R 13421686..13421717 474..507 94   Plus

BO15142.pep Sequence

Translation from 16 to 523

> BO15142.pep
MFNIKLLLLLLAVSWFHHGQAVQETKIEEKPVSEPEIESEIKNSTSVPSK
CNIYYRNYQWALQDCVCRCFQNECLMQIESDQRKKEGRSPFVPVTEELCR
SFICKKCSVGFPVVAEFPIPAPCGCNRKPGSIATERFYSLCHLLKFSAEN
SKPFLTYSYCWPFASFLDH

BO15142.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Sgs5-PA 163 CG7596-PA 1..163 1..163 897 100 Plus
CG7587-PA 142 CG7587-PA 1..142 1..160 395 46.2 Plus