Clone BO15143 Report

Search the DGRC for BO15143

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:151
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptJon65Ai-RA
Protein status:BO15143.pep: validated full length
Sequenced Size:820

Clone Sequence Records

BO15143.3prime Sequence

818 bp (779 high quality bases) assembled on 2006-06-16

> BO15143.3prime
ATGGTCTAGAAAGCTTGCATAAGAGATGCCAGTGTTGTCGCGGATCCAGT
CCAGGTAGCTGGTGACGCGCACCATACCCTTGGGACCGTTGGAGAGGCAG
CCGGCGGAGGAGCCGAAGGACACAATGCCCACCTGGCGGTTGCCGTCGTG
GATGACCAGTGGGCCACCGGAGTCGCCGCTGCAGGTGCCCTTGTTCTCGG
GAGTGGGGATGCAGATTAGGTCGCCGGAGAAGCTGCCGTAGTAGTTCTCG
CACACGGAGTTTTCGCCAATCTGGACATCGACGCAGTTCAGGTACTCGGA
GACACCGCCCTCATCGGAGGTCTTGCCCCATCCGGAGACCAGAGCCCACC
AGCCTTGGTAGTTGTTGTAGCGATCGTCGTACCTGGGGAGCTCCACCTTG
TTGACCAGCGACCAGAAGTCTACGTGGGGAGTGCGAATGAGGGAGATGTC
TCCAGATCCGTGCTCAATGAAGTCGCTACGTCCCACCCAGTGGGTGTACT
GTGCCTGCAGGCGCCAGAGGGCTCCGTAGTAGATGGTCACCGATTCCATG
CCATCGGTACAATGCTTGGCGGTCATCACCCAGGTGTTGCCGATAATGGA
ACCGCCGCACCAGGTGCCTCCACCGTTCTTGCTGAAGCCCAAACCGACAA
TGTAGGGCACCTTGCCTTCGTAGGCAGGATATCCCATGGTGATCCTACCT
TCGATCGAGGCCTTGCCCACGGGCACATCCTTCCAGAAAACCGGCTTCTC
GAACGCCGTGGCGGAGGCAATCACCCCCAAAAGTAGGACCGCTAGCACCT
TCATGTCGACTGATAACT

BO15143.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10475-PA 789 Jon65Ai-RA 42..786 763..19 3725 100 Minus
CG6580-PA 780 Jon65Aii-RA 355..465 435..325 305 90.9 Minus
CG6580-PA 780 Jon65Aii-RA 590..708 206..88 245 88.2 Minus
CG8869-PA 831 Jon25Bii-RA 778..824 69..23 210 97.8 Minus
CG31034-PA 798 Jon99Cii-RA 745..791 69..23 160 93.6 Minus
CG31362-PA 798 Jon99Ciii-RA 745..791 69..23 160 93.6 Minus
CG8869-PA 831 Jon25Bii-RA 139..190 681..630 135 90.3 Minus
CG8579-PA 816 Jon44E-RA 532..558 294..268 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Ai-RB 951 CG10475-RB 26..813 806..19 3940 100 Minus
Jon65Ai-RA 860 CG10475-RA 26..813 806..19 3940 100 Minus
Jon65Aii-RA 833 CG6580-RA 369..805 450..20 785 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6053631..6054418 19..806 3940 100 Plus
3L 28110227 3L 6052751..6053187 450..20 755 78.7 Minus
3L 28110227 3L 8391807..8392021 540..326 385 78.6 Minus
2L 23513712 2L 4952785..4953004 490..709 350 77.3 Plus
2R 25286936 2R 8691844..8692188 450..112 340 73.9 Minus
3L 28110227 3L 8393171..8393378 326..533 290 76 Plus
2L 23513712 2L 4950300..4950403 344..447 235 81.7 Plus
2L 23513712 2L 4952555..4952724 281..450 235 75.9 Plus
2L 23513712 2L 4952291..4952337 23..69 220 97.9 Plus
2L 23513712 2L 4954670..4954757 363..450 215 83 Plus
Blast to na_te.dros performed on 2015-01-30 18:48:05 has no hits.

BO15143.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:32 Download gff for BO15143.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10475-PA 42..789 15..763 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:57 Download gff for BO15143.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10475-PA 42..789 15..763 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:02:12 Download gff for BO15143.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Ai-RA 22..816 15..811 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:15:07 Download gff for BO15143.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Ai-RA 22..816 15..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:15:07 Download gff for BO15143.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6053627..6054422 15..811 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:02:12 Download gff for BO15143.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6046727..6047522 15..811 99   Plus

BO15143.5prime Sequence

818 bp (727 high quality bases) assembled on 2006-06-16

> BO15143.5prime
GAAGTTATCAGTCGACATGAAGGTGCTAGCGGTCCTACTTTTGGGGGTGA
TTGCCTCCGCCACGGCGTTCGAGAAGCCGGTTTTCTGGAAGGATGTGCCC
GTGGGCAAGGCCTCGATCGAAGGTAGGATCACCATGGGATATCCTGCCTA
CGAAGGCAAGGTGCCCTACATTGTCGGTTTGGGCTTCAGCAAGAACGGTG
GAGGCACCTGGTGCGGCGGTTCCATTATCGGCAACACCTGGGTGATGACC
GCCAAGCATTGTACCGATGGCATGGAATCGGTGACCATCTACTACGGAGC
CCTCTGGCGCCTGCAGGCACAGTACACCCACTGGGTGGGACGTAGCGACT
TCATTGAGCACGGATCTGGAGACATCTCCCTCATTCGCACTCCCCACGTA
GACTTCTGGTCGCTGGTCAACAAGGTGGAGCTCCCCAGGTACGACGATCG
CTACAACAACTACCAAGGCTGGTGGGCTCTGGTCTCCGGATGGGGCAAGA
CCTCCGATGAGGGCGGTGTCTCCGAGTACCTGAACTGCGTCGATGTCCAG
ATTGGCGAAAACTCCGTGTGCGAGAACTACTACGGCAGCTTCTCCGGCGA
CCTAATCTGCATCCCCACTCCCGAGAACAAGGGCACCTGCAGCGGCGACT
CCGGTGGCCCACTGGTCATCCACGACGGCAACCGCCAGGTGGGCATTGTG
TCCTTCGGCTCCTCCGCCGGCTGCCTCTCCAACGGTCCCAAGGGTATGGT
GCGCGTCACCAGCTACCTGGACTGGATCCGCGACAACACTGGCATCTCTT
ATGNCAGCTTTCTAGACC

BO15143.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10475-PA 789 Jon65Ai-RA 1..715 17..731 3575 100 Plus
CG6580-PA 780 Jon65Aii-RA 355..465 386..496 305 90.9 Plus
CG6580-PA 780 Jon65Aii-RA 590..687 615..712 240 89.7 Plus
CG8579-PA 816 Jon44E-RA 532..558 527..553 135 100 Plus
CG8869-PA 831 Jon25Bii-RA 139..190 140..191 135 90.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Ai-RB 951 CG10475-RB 26..813 15..802 3940 100 Plus
Jon65Ai-RA 860 CG10475-RA 26..813 15..802 3940 100 Plus
Jon65Aii-RA 833 CG6580-RA 369..805 371..801 785 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6053631..6054418 802..15 3940 100 Minus
3L 28110227 3L 6052751..6053187 371..801 755 78.7 Plus
3L 28110227 3L 8391807..8392021 281..495 385 78.6 Plus
2L 23513712 2L 4952785..4953004 331..112 350 77.3 Minus
2R 25286936 2R 8691844..8692188 371..709 340 73.9 Plus
3L 28110227 3L 8393171..8393378 495..288 290 76 Minus
2L 23513712 2L 4950300..4950403 477..374 235 81.7 Minus
2L 23513712 2L 4952555..4952724 540..371 235 75.9 Minus
2L 23513712 2L 4952291..4952337 798..752 220 97.9 Minus
2L 23513712 2L 4954670..4954757 458..371 215 83 Minus
Blast to na_te.dros performed on 2015-02-11 13:14:34 has no hits.

BO15143.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:33 Download gff for BO15143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10475-PA 1..744 17..759 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:58 Download gff for BO15143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10475-PA 1..744 17..759 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:08:47 Download gff for BO15143.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Ai-RA 22..813 10..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:25 Download gff for BO15143.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon65Ai-RA 22..813 10..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:25 Download gff for BO15143.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6053631..6054422 10..802 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:08:47 Download gff for BO15143.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6046731..6047522 10..802 99   Minus

BO15143.complete Sequence

820 bp (820 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633360

> BO15143.complete
GAAGTTATCAGTCGACATGAAGGTGCTAGCGGTCCTACTTTTGGGGGTGA
TTGCCTCCGCCACGGCGTTCGAGAAGCCGGTTTTCTGGAAGGATGTGCCC
GTGGGCAAGGCCTCGATCGAAGGTAGGATCACCATGGGATATCCTGCCTA
CGAAGGCAAGGTGCCCTACATTGTCGGTTTGGGCTTCAGCAAGAACGGTG
GAGGCACCTGGTGCGGCGGTTCCATTATCGGCAACACCTGGGTGATGACC
GCCAAGCATTGTACCGATGGCATGGAATCGGTGACCATCTACTACGGAGC
CCTCTGGCGCCTGCAGGCACAGTACACCCACTGGGTGGGACGTAGCGACT
TCATTGAGCACGGATCTGGAGACATCTCCCTCATTCGCACTCCCCACGTA
GACTTCTGGTCGCTGGTCAACAAGGTGGAGCTCCCCAGGTACGACGATCG
CTACAACAACTACCAAGGCTGGTGGGCTCTGGTCTCCGGATGGGGCAAGA
CCTCCGATGAGGGCGGTGTCTCCGAGTACCTGAACTGCGTCGATGTCCAG
ATTGGCGAAAACTCCGTGTGCGAGAACTACTACGGCAGCTTCTCCGGCGA
CCTAATCTGCATCCCCACTCCCGAGAACAAGGGCACCTGCAGCGGCGACT
CCGGTGGCCCACTGGTCATCCACGACGGCAACCGCCAGGTGGGCATTGTG
TCCTTCGGCTCCTCCGCCGGCTGCCTCTCCAACGGTCCCAAGGGTATGGT
GCGCGTCACCAGCTACCTGGACTGGATCCGCGACAACACTGGCATCTCTT
ATGCAAGCTTTCTAGACCAT

BO15143.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Ai-RB 789 CG10475-PB 1..786 17..802 3930 100 Plus
Jon65Ai-RA 789 CG10475-PA 1..786 17..802 3930 100 Plus
Jon65Aii-RA 780 CG6580-PA 340..776 371..801 755 78.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Ai-RB 951 CG10475-RB 26..813 15..802 3940 100 Plus
Jon65Ai-RA 860 CG10475-RA 26..813 15..802 3940 100 Plus
Jon65Aii-RA 833 CG6580-RA 369..805 371..801 755 78.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6053631..6054418 802..15 3940 100 Minus
3L 28110227 3L 6052751..6053187 371..801 755 78.7 Plus
3L 28110227 3L 8391807..8392021 281..495 385 78.6 Plus
2L 23513712 2L 4952785..4953004 331..112 350 77.3 Minus
2R 25286936 2R 8691844..8692188 371..709 340 73.9 Plus
3L 28110227 3L 8393171..8393378 495..288 290 76 Minus
3R 32079331 3R 30487393..30487531 509..371 290 80.6 Minus
3R 32079331 3R 30489360..30489498 371..509 290 80.6 Plus
3R 32079331 3R 29922608..29922746 371..509 275 79.9 Plus
3R 32079331 3R 29924083..29924221 509..371 275 79.9 Minus
3R 32079331 3R 29922868..29923032 634..798 255 77 Plus
3R 32079331 3R 29923797..29923961 798..634 255 77 Minus
2L 23513712 2L 4950300..4950403 477..374 235 81.7 Minus
2L 23513712 2L 4952555..4952724 540..371 235 75.9 Minus
3R 32079331 3R 30487107..30487271 798..634 225 75.8 Minus
2L 23513712 2L 4952291..4952337 798..752 220 97.9 Minus
2L 23513712 2L 4954670..4954757 458..371 215 83 Minus
Blast to na_te.dros performed on 2014-11-27 14:33:40 has no hits.

BO15143.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:07 Download gff for BO15143.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Ai-RA 1..789 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:25 Download gff for BO15143.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Ai-RA 5..799 10..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:27 Download gff for BO15143.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Ai-RA 28..813 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:07 Download gff for BO15143.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Ai-RA 5..799 10..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:17 Download gff for BO15143.complete
Subject Subject Range Query Range Percent Splice Strand
Jon65Ai-RA 28..813 17..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:17 Download gff for BO15143.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6053629..6054416 17..804 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:27 Download gff for BO15143.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6046729..6047516 17..804 99   Minus

BO15143.pep Sequence

Translation from 16 to 820

> BO15143.pep
MKVLAVLLLGVIASATAFEKPVFWKDVPVGKASIEGRITMGYPAYEGKVP
YIVGLGFSKNGGGTWCGGSIIGNTWVMTAKHCTDGMESVTIYYGALWRLQ
AQYTHWVGRSDFIEHGSGDISLIRTPHVDFWSLVNKVELPRYDDRYNNYQ
GWWALVSGWGKTSDEGGVSEYLNCVDVQIGENSVCENYYGSFSGDLICIP
TPENKGTCSGDSGGPLVIHDGNRQVGIVSFGSSAGCLSNGPKGMVRVTSY
LDWIRDNTGISYASFLDH

BO15143.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Jon65Ai-PB 262 CG10475-PB 1..262 1..262 1440 100 Plus
Jon65Ai-PA 262 CG10475-PA 1..262 1..262 1440 100 Plus
Jon65Aii-PA 259 CG6580-PA 1..259 1..262 951 67.4 Plus
Jon44E-PB 271 CG8579-PB 10..271 4..262 864 63.1 Plus
Jon44E-PA 271 CG8579-PA 10..271 4..262 864 63.1 Plus