Clone Sequence Records
BO15143.3prime Sequence
818 bp (779 high quality bases) assembled on 2006-06-16
> BO15143.3prime
ATGGTCTAGAAAGCTTGCATAAGAGATGCCAGTGTTGTCGCGGATCCAGT
CCAGGTAGCTGGTGACGCGCACCATACCCTTGGGACCGTTGGAGAGGCAG
CCGGCGGAGGAGCCGAAGGACACAATGCCCACCTGGCGGTTGCCGTCGTG
GATGACCAGTGGGCCACCGGAGTCGCCGCTGCAGGTGCCCTTGTTCTCGG
GAGTGGGGATGCAGATTAGGTCGCCGGAGAAGCTGCCGTAGTAGTTCTCG
CACACGGAGTTTTCGCCAATCTGGACATCGACGCAGTTCAGGTACTCGGA
GACACCGCCCTCATCGGAGGTCTTGCCCCATCCGGAGACCAGAGCCCACC
AGCCTTGGTAGTTGTTGTAGCGATCGTCGTACCTGGGGAGCTCCACCTTG
TTGACCAGCGACCAGAAGTCTACGTGGGGAGTGCGAATGAGGGAGATGTC
TCCAGATCCGTGCTCAATGAAGTCGCTACGTCCCACCCAGTGGGTGTACT
GTGCCTGCAGGCGCCAGAGGGCTCCGTAGTAGATGGTCACCGATTCCATG
CCATCGGTACAATGCTTGGCGGTCATCACCCAGGTGTTGCCGATAATGGA
ACCGCCGCACCAGGTGCCTCCACCGTTCTTGCTGAAGCCCAAACCGACAA
TGTAGGGCACCTTGCCTTCGTAGGCAGGATATCCCATGGTGATCCTACCT
TCGATCGAGGCCTTGCCCACGGGCACATCCTTCCAGAAAACCGGCTTCTC
GAACGCCGTGGCGGAGGCAATCACCCCCAAAAGTAGGACCGCTAGCACCT
TCATGTCGACTGATAACT
BO15143.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10475-PA | 789 | Jon65Ai-RA | 42..786 | 763..19 | 3725 | 100 | Minus |
CG6580-PA | 780 | Jon65Aii-RA | 355..465 | 435..325 | 305 | 90.9 | Minus |
CG6580-PA | 780 | Jon65Aii-RA | 590..708 | 206..88 | 245 | 88.2 | Minus |
CG8869-PA | 831 | Jon25Bii-RA | 778..824 | 69..23 | 210 | 97.8 | Minus |
CG31034-PA | 798 | Jon99Cii-RA | 745..791 | 69..23 | 160 | 93.6 | Minus |
CG31362-PA | 798 | Jon99Ciii-RA | 745..791 | 69..23 | 160 | 93.6 | Minus |
CG8869-PA | 831 | Jon25Bii-RA | 139..190 | 681..630 | 135 | 90.3 | Minus |
CG8579-PA | 816 | Jon44E-RA | 532..558 | 294..268 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Ai-RB | 951 | CG10475-RB | 26..813 | 806..19 | 3940 | 100 | Minus |
Jon65Ai-RA | 860 | CG10475-RA | 26..813 | 806..19 | 3940 | 100 | Minus |
Jon65Aii-RA | 833 | CG6580-RA | 369..805 | 450..20 | 785 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6053631..6054418 | 19..806 | 3940 | 100 | Plus |
3L | 28110227 | 3L | 6052751..6053187 | 450..20 | 755 | 78.7 | Minus |
3L | 28110227 | 3L | 8391807..8392021 | 540..326 | 385 | 78.6 | Minus |
2L | 23513712 | 2L | 4952785..4953004 | 490..709 | 350 | 77.3 | Plus |
2R | 25286936 | 2R | 8691844..8692188 | 450..112 | 340 | 73.9 | Minus |
3L | 28110227 | 3L | 8393171..8393378 | 326..533 | 290 | 76 | Plus |
2L | 23513712 | 2L | 4950300..4950403 | 344..447 | 235 | 81.7 | Plus |
2L | 23513712 | 2L | 4952555..4952724 | 281..450 | 235 | 75.9 | Plus |
2L | 23513712 | 2L | 4952291..4952337 | 23..69 | 220 | 97.9 | Plus |
2L | 23513712 | 2L | 4954670..4954757 | 363..450 | 215 | 83 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:48:05 has no hits.
BO15143.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:32 Download gff for
BO15143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10475-PA | 42..789 | 15..763 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:57 Download gff for
BO15143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10475-PA | 42..789 | 15..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:02:12 Download gff for
BO15143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 22..816 | 15..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:15:07 Download gff for
BO15143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 22..816 | 15..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:15:07 Download gff for
BO15143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6053627..6054422 | 15..811 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:02:12 Download gff for
BO15143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6046727..6047522 | 15..811 | 99 | | Plus |
BO15143.5prime Sequence
818 bp (727 high quality bases) assembled on 2006-06-16
> BO15143.5prime
GAAGTTATCAGTCGACATGAAGGTGCTAGCGGTCCTACTTTTGGGGGTGA
TTGCCTCCGCCACGGCGTTCGAGAAGCCGGTTTTCTGGAAGGATGTGCCC
GTGGGCAAGGCCTCGATCGAAGGTAGGATCACCATGGGATATCCTGCCTA
CGAAGGCAAGGTGCCCTACATTGTCGGTTTGGGCTTCAGCAAGAACGGTG
GAGGCACCTGGTGCGGCGGTTCCATTATCGGCAACACCTGGGTGATGACC
GCCAAGCATTGTACCGATGGCATGGAATCGGTGACCATCTACTACGGAGC
CCTCTGGCGCCTGCAGGCACAGTACACCCACTGGGTGGGACGTAGCGACT
TCATTGAGCACGGATCTGGAGACATCTCCCTCATTCGCACTCCCCACGTA
GACTTCTGGTCGCTGGTCAACAAGGTGGAGCTCCCCAGGTACGACGATCG
CTACAACAACTACCAAGGCTGGTGGGCTCTGGTCTCCGGATGGGGCAAGA
CCTCCGATGAGGGCGGTGTCTCCGAGTACCTGAACTGCGTCGATGTCCAG
ATTGGCGAAAACTCCGTGTGCGAGAACTACTACGGCAGCTTCTCCGGCGA
CCTAATCTGCATCCCCACTCCCGAGAACAAGGGCACCTGCAGCGGCGACT
CCGGTGGCCCACTGGTCATCCACGACGGCAACCGCCAGGTGGGCATTGTG
TCCTTCGGCTCCTCCGCCGGCTGCCTCTCCAACGGTCCCAAGGGTATGGT
GCGCGTCACCAGCTACCTGGACTGGATCCGCGACAACACTGGCATCTCTT
ATGNCAGCTTTCTAGACC
BO15143.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10475-PA | 789 | Jon65Ai-RA | 1..715 | 17..731 | 3575 | 100 | Plus |
CG6580-PA | 780 | Jon65Aii-RA | 355..465 | 386..496 | 305 | 90.9 | Plus |
CG6580-PA | 780 | Jon65Aii-RA | 590..687 | 615..712 | 240 | 89.7 | Plus |
CG8579-PA | 816 | Jon44E-RA | 532..558 | 527..553 | 135 | 100 | Plus |
CG8869-PA | 831 | Jon25Bii-RA | 139..190 | 140..191 | 135 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Ai-RB | 951 | CG10475-RB | 26..813 | 15..802 | 3940 | 100 | Plus |
Jon65Ai-RA | 860 | CG10475-RA | 26..813 | 15..802 | 3940 | 100 | Plus |
Jon65Aii-RA | 833 | CG6580-RA | 369..805 | 371..801 | 785 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6053631..6054418 | 802..15 | 3940 | 100 | Minus |
3L | 28110227 | 3L | 6052751..6053187 | 371..801 | 755 | 78.7 | Plus |
3L | 28110227 | 3L | 8391807..8392021 | 281..495 | 385 | 78.6 | Plus |
2L | 23513712 | 2L | 4952785..4953004 | 331..112 | 350 | 77.3 | Minus |
2R | 25286936 | 2R | 8691844..8692188 | 371..709 | 340 | 73.9 | Plus |
3L | 28110227 | 3L | 8393171..8393378 | 495..288 | 290 | 76 | Minus |
2L | 23513712 | 2L | 4950300..4950403 | 477..374 | 235 | 81.7 | Minus |
2L | 23513712 | 2L | 4952555..4952724 | 540..371 | 235 | 75.9 | Minus |
2L | 23513712 | 2L | 4952291..4952337 | 798..752 | 220 | 97.9 | Minus |
2L | 23513712 | 2L | 4954670..4954757 | 458..371 | 215 | 83 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:14:34 has no hits.
BO15143.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:33 Download gff for
BO15143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10475-PA | 1..744 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:58 Download gff for
BO15143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10475-PA | 1..744 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:08:47 Download gff for
BO15143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 22..813 | 10..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:25 Download gff for
BO15143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 22..813 | 10..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:25 Download gff for
BO15143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6053631..6054422 | 10..802 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:08:47 Download gff for
BO15143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6046731..6047522 | 10..802 | 99 | | Minus |
BO15143.complete Sequence
820 bp (820 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633360
> BO15143.complete
GAAGTTATCAGTCGACATGAAGGTGCTAGCGGTCCTACTTTTGGGGGTGA
TTGCCTCCGCCACGGCGTTCGAGAAGCCGGTTTTCTGGAAGGATGTGCCC
GTGGGCAAGGCCTCGATCGAAGGTAGGATCACCATGGGATATCCTGCCTA
CGAAGGCAAGGTGCCCTACATTGTCGGTTTGGGCTTCAGCAAGAACGGTG
GAGGCACCTGGTGCGGCGGTTCCATTATCGGCAACACCTGGGTGATGACC
GCCAAGCATTGTACCGATGGCATGGAATCGGTGACCATCTACTACGGAGC
CCTCTGGCGCCTGCAGGCACAGTACACCCACTGGGTGGGACGTAGCGACT
TCATTGAGCACGGATCTGGAGACATCTCCCTCATTCGCACTCCCCACGTA
GACTTCTGGTCGCTGGTCAACAAGGTGGAGCTCCCCAGGTACGACGATCG
CTACAACAACTACCAAGGCTGGTGGGCTCTGGTCTCCGGATGGGGCAAGA
CCTCCGATGAGGGCGGTGTCTCCGAGTACCTGAACTGCGTCGATGTCCAG
ATTGGCGAAAACTCCGTGTGCGAGAACTACTACGGCAGCTTCTCCGGCGA
CCTAATCTGCATCCCCACTCCCGAGAACAAGGGCACCTGCAGCGGCGACT
CCGGTGGCCCACTGGTCATCCACGACGGCAACCGCCAGGTGGGCATTGTG
TCCTTCGGCTCCTCCGCCGGCTGCCTCTCCAACGGTCCCAAGGGTATGGT
GCGCGTCACCAGCTACCTGGACTGGATCCGCGACAACACTGGCATCTCTT
ATGCAAGCTTTCTAGACCAT
BO15143.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Ai-RB | 789 | CG10475-PB | 1..786 | 17..802 | 3930 | 100 | Plus |
Jon65Ai-RA | 789 | CG10475-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Jon65Aii-RA | 780 | CG6580-PA | 340..776 | 371..801 | 755 | 78.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Ai-RB | 951 | CG10475-RB | 26..813 | 15..802 | 3940 | 100 | Plus |
Jon65Ai-RA | 860 | CG10475-RA | 26..813 | 15..802 | 3940 | 100 | Plus |
Jon65Aii-RA | 833 | CG6580-RA | 369..805 | 371..801 | 755 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6053631..6054418 | 802..15 | 3940 | 100 | Minus |
3L | 28110227 | 3L | 6052751..6053187 | 371..801 | 755 | 78.7 | Plus |
3L | 28110227 | 3L | 8391807..8392021 | 281..495 | 385 | 78.6 | Plus |
2L | 23513712 | 2L | 4952785..4953004 | 331..112 | 350 | 77.3 | Minus |
2R | 25286936 | 2R | 8691844..8692188 | 371..709 | 340 | 73.9 | Plus |
3L | 28110227 | 3L | 8393171..8393378 | 495..288 | 290 | 76 | Minus |
3R | 32079331 | 3R | 30487393..30487531 | 509..371 | 290 | 80.6 | Minus |
3R | 32079331 | 3R | 30489360..30489498 | 371..509 | 290 | 80.6 | Plus |
3R | 32079331 | 3R | 29922608..29922746 | 371..509 | 275 | 79.9 | Plus |
3R | 32079331 | 3R | 29924083..29924221 | 509..371 | 275 | 79.9 | Minus |
3R | 32079331 | 3R | 29922868..29923032 | 634..798 | 255 | 77 | Plus |
3R | 32079331 | 3R | 29923797..29923961 | 798..634 | 255 | 77 | Minus |
2L | 23513712 | 2L | 4950300..4950403 | 477..374 | 235 | 81.7 | Minus |
2L | 23513712 | 2L | 4952555..4952724 | 540..371 | 235 | 75.9 | Minus |
3R | 32079331 | 3R | 30487107..30487271 | 798..634 | 225 | 75.8 | Minus |
2L | 23513712 | 2L | 4952291..4952337 | 798..752 | 220 | 97.9 | Minus |
2L | 23513712 | 2L | 4954670..4954757 | 458..371 | 215 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:33:40 has no hits.
BO15143.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:07 Download gff for
BO15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:25 Download gff for
BO15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 5..799 | 10..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:27 Download gff for
BO15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 28..813 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:07 Download gff for
BO15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 5..799 | 10..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:17 Download gff for
BO15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon65Ai-RA | 28..813 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:17 Download gff for
BO15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6053629..6054416 | 17..804 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:27 Download gff for
BO15143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6046729..6047516 | 17..804 | 99 | | Minus |
BO15143.pep Sequence
Translation from 16 to 820
> BO15143.pep
MKVLAVLLLGVIASATAFEKPVFWKDVPVGKASIEGRITMGYPAYEGKVP
YIVGLGFSKNGGGTWCGGSIIGNTWVMTAKHCTDGMESVTIYYGALWRLQ
AQYTHWVGRSDFIEHGSGDISLIRTPHVDFWSLVNKVELPRYDDRYNNYQ
GWWALVSGWGKTSDEGGVSEYLNCVDVQIGENSVCENYYGSFSGDLICIP
TPENKGTCSGDSGGPLVIHDGNRQVGIVSFGSSAGCLSNGPKGMVRVTSY
LDWIRDNTGISYASFLDH
BO15143.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon65Ai-PB | 262 | CG10475-PB | 1..262 | 1..262 | 1440 | 100 | Plus |
Jon65Ai-PA | 262 | CG10475-PA | 1..262 | 1..262 | 1440 | 100 | Plus |
Jon65Aii-PA | 259 | CG6580-PA | 1..259 | 1..262 | 951 | 67.4 | Plus |
Jon44E-PB | 271 | CG8579-PB | 10..271 | 4..262 | 864 | 63.1 | Plus |
Jon44E-PA | 271 | CG8579-PA | 10..271 | 4..262 | 864 | 63.1 | Plus |