Clone Sequence Records
BO15147.3prime Sequence
710 bp (710 high quality bases) assembled on 2006-06-16
> BO15147.3prime
ATGGTCTAGAAAGCTTGCAAACGGCACTGCCTGTTCGACCAGCTTGTAGC
CGTGGCCGGAGTAGCTTCGCGGCGGGTAGAGGACGAACAGACCCAACTGC
AGCAGCGACAGTATGCAGCCCAGAAAGTTGGGAATCTGGATAAATGAGTC
CGATATCAGTATACCGTAGATAAGCCACTGCAGGCTGACCACGAAGGACG
TGGCTATCAGAGGCAGGGGAAGGCTCTCGGAGTTCTTCGCCCGTATCACA
TGCAGCAAGCTAGCCAGCGGGGCGGCGAAGAAACACACGGTCACGATGCA
GCACACAATTCCTGTGACGTGTATCATTCGATCGCGCTGATCTTCCAGCC
GATTGGTGTAGACAATGACCACCACCAGAACAGTCAGAACAAACCCAAAC
TGCTTTACACAGGCACGTTTGTTGACGGTAAACACATAGTAGATCAGCGT
GTAGACCAGAAAGAGCGTCGATCCGATGATGTTGACCAGCACAATGCTCT
GCTCGTTGGTTAAGACACCGTAGCGCAACCAAAAGCTGCACGATAAGAAT
CCGCATATGAAGGGAACTCCGGAAGAGTCCCCCGTGCTTTTCTTCTGGAT
GTACTTTCGGCATATCATGGCGCCGGAGAGGAACTGGAAGACGGTGCTGA
TCACCGCCGTCGTTGACAGCAGTGAGTCGTAGGCCACCGCCGACATGTCG
ACTGATAACT
BO15147.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8717-PA | 681 | slv-RA | 1..678 | 696..19 | 3390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slv-RC | 1247 | CG8717-RC | 286..963 | 696..19 | 3390 | 100 | Minus |
slv-RB | 1381 | CG8717-RB | 420..1097 | 696..19 | 3390 | 100 | Minus |
slv-RA | 1091 | CG8717-RA | 130..807 | 696..19 | 3390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8081273..8081503 | 311..541 | 1155 | 100 | Plus |
2R | 25286936 | 2R | 8081031..8081209 | 136..314 | 895 | 100 | Plus |
2R | 25286936 | 2R | 8080843..8080962 | 19..138 | 600 | 100 | Plus |
2R | 25286936 | 2R | 8081860..8081939 | 540..619 | 400 | 100 | Plus |
2R | 25286936 | 2R | 8082015..8082091 | 620..696 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:16:38 has no hits.
BO15147.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:37 Download gff for
BO15147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-PA | 1..681 | 18..696 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:02 Download gff for
BO15147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8717-PA | 1..681 | 18..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:19 Download gff for
BO15147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 125..812 | 13..701 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:49:16 Download gff for
BO15147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 125..812 | 13..701 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:49:16 Download gff for
BO15147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8080838..8080959 | 13..135 | 97 | <- | Plus |
2R | 8081031..8081206 | 136..311 | 100 | <- | Plus |
2R | 8081274..8081503 | 312..541 | 100 | <- | Plus |
2R | 8081862..8081939 | 542..619 | 100 | <- | Plus |
2R | 8082015..8082096 | 620..701 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:19 Download gff for
BO15147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3969367..3969444 | 542..619 | 100 | <- | Plus |
arm_2R | 3969520..3969601 | 620..701 | 97 | | Plus |
arm_2R | 3968343..3968464 | 13..135 | 97 | <- | Plus |
arm_2R | 3968536..3968711 | 136..311 | 100 | <- | Plus |
arm_2R | 3968779..3969008 | 312..541 | 100 | <- | Plus |
BO15147.5prime Sequence
710 bp (710 high quality bases) assembled on 2006-06-16
> BO15147.5prime
GAAGTTATCAGTCGACATGTCGGCGGTGGCCTACGACTCACTGCTGTCAA
CGACGGCGGTGATCAGCACCGTCTTCCAGTTCCTCTCCGGCGCCATGATA
TGCCGAAAGTACATCCAGAAGAAAAGCACGGGGGACTCTTCCGGAGTTCC
CTTCATATGCGGATTCTTATCGTGCAGCTTTTGGTTGCGCTACGGTGTCT
TAACCAACGAGCAGAGCATTGTGCTGGTCAACATCATCGGATCGACGCTC
TTTCTGGTCTACACGCTGATCTACTATGTGTTTACCGTCAACAAACGTGC
CTGTGTAAAGCAGTTTGGGTTTGTTCTGACTGTTCTGGTGGTGGTCATTG
TCTACACCAATCGGCTGGAAGATCAGCGCGATCGAATGATACACGTCACA
GGAATTGTGTGCTGCATCGTGACCGTGTGTTTCTTCGCCGCCCCGCTGGC
TAGCTTGCTGCATGTGATACGGGCGAAGAACTCCGAGAGCCTTCCCCTGC
CTCTGATAGCCACGTCCTTCGTGGTCAGCCTGCAGTGGCTTATCTACGGT
ATACTGATATCGGACTCATTTATCCAGATTCCCAACTTTCTGGGCTGCAT
ACTGTCGCTGCTGCAGTTGGGTCTGTTCGTCCTCTACCCGCCGCGAAGCT
ACTCCGGCCACGGCTACAAGCTGGTCGAACAGGCAGTGCCGTTTGCAAGC
TTTCTAGACC
BO15147.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8717-PA | 681 | slv-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slv-RC | 1247 | CG8717-RC | 286..963 | 17..694 | 3390 | 100 | Plus |
slv-RB | 1381 | CG8717-RB | 420..1097 | 17..694 | 3390 | 100 | Plus |
slv-RA | 1091 | CG8717-RA | 130..807 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8081273..8081503 | 402..172 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 8081031..8081209 | 577..399 | 895 | 100 | Minus |
2R | 25286936 | 2R | 8080843..8080962 | 694..575 | 600 | 100 | Minus |
2R | 25286936 | 2R | 8081860..8081939 | 173..94 | 400 | 100 | Minus |
2R | 25286936 | 2R | 8082015..8082091 | 93..17 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:38:54 has no hits.
BO15147.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:37 Download gff for
BO15147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-PA | 1..681 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:03 Download gff for
BO15147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8717-PA | 1..681 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:33:42 Download gff for
BO15147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 125..812 | 12..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:19:20 Download gff for
BO15147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 125..812 | 12..700 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:19:20 Download gff for
BO15147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8080838..8080959 | 578..700 | 97 | <- | Minus |
2R | 8081031..8081206 | 402..577 | 100 | <- | Minus |
2R | 8081274..8081503 | 172..401 | 100 | <- | Minus |
2R | 8081862..8081939 | 94..171 | 100 | <- | Minus |
2R | 8082015..8082096 | 12..93 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:33:42 Download gff for
BO15147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3968343..3968464 | 578..700 | 97 | <- | Minus |
arm_2R | 3968536..3968711 | 402..577 | 100 | <- | Minus |
arm_2R | 3968779..3969008 | 172..401 | 100 | <- | Minus |
arm_2R | 3969367..3969444 | 94..171 | 100 | <- | Minus |
arm_2R | 3969520..3969601 | 12..93 | 97 | | Minus |
BO15147.complete Sequence
712 bp (712 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633362
> BO15147.complete
GAAGTTATCAGTCGACATGTCGGCGGTGGCCTACGACTCACTGCTGTCAA
CGACGGCGGTGATCAGCACCGTCTTCCAGTTCCTCTCCGGCGCCATGATA
TGCCGAAAGTACATCCAGAAGAAAAGCACGGGGGACTCTTCCGGAGTTCC
CTTCATATGCGGATTCTTATCGTGCAGCTTTTGGTTGCGCTACGGTGTCT
TAACCAACGAGCAGAGCATTGTGCTGGTCAACATCATCGGATCGACGCTC
TTTCTGGTCTACACGCTGATCTACTATGTGTTTACCGTCAACAAACGTGC
CTGTGTAAAGCAGTTTGGGTTTGTTCTGACTGTTCTGGTGGTGGTCATTG
TCTACACCAATCGGCTGGAAGATCAGCGCGATCGAATGATACACGTCACA
GGAATTGTGTGCTGCATCGTGACCGTGTGTTTCTTCGCCGCCCCGCTGGC
TAGCTTGCTGCATGTGATACGGGCGAAGAACTCCGAGAGCCTTCCCCTGC
CTCTGATAGCCACGTCCTTCGTGGTCAGCCTGCAGTGGCTTATCTACGGT
ATACTGATATCGGACTCATTTATCCAGATTCCCAACTTTCTGGGCTGCAT
ACTGTCGCTGCTGCAGTTGGGTCTGTTCGTCCTCTACCCGCCGCGAAGCT
ACTCCGGCCACGGCTACAAGCTGGTCGAACAGGCAGTGCCGTTTGCAAGC
TTTCTAGACCAT
BO15147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slv-RC | 681 | CG8717-PC | 1..678 | 17..694 | 3390 | 100 | Plus |
slv-RB | 681 | CG8717-PB | 1..678 | 17..694 | 3390 | 100 | Plus |
slv-RA | 681 | CG8717-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slv-RC | 1247 | CG8717-RC | 286..963 | 17..694 | 3390 | 100 | Plus |
slv-RB | 1381 | CG8717-RB | 420..1097 | 17..694 | 3390 | 100 | Plus |
slv-RA | 1091 | CG8717-RA | 130..807 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8081273..8081503 | 402..172 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 8081031..8081209 | 577..399 | 895 | 100 | Minus |
2R | 25286936 | 2R | 8080843..8080962 | 694..575 | 600 | 100 | Minus |
2R | 25286936 | 2R | 8081860..8081939 | 173..94 | 400 | 100 | Minus |
2R | 25286936 | 2R | 8082015..8082091 | 93..17 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:24:20 has no hits.
BO15147.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:09 Download gff for
BO15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 1..681 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:28 Download gff for
BO15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 275..962 | 12..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:07 Download gff for
BO15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 130..807 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:09 Download gff for
BO15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 275..962 | 12..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:46 Download gff for
BO15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slv-RA | 130..807 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:46 Download gff for
BO15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8080841..8080959 | 578..696 | 98 | <- | Minus |
2R | 8081031..8081206 | 402..577 | 100 | <- | Minus |
2R | 8081274..8081503 | 172..401 | 100 | <- | Minus |
2R | 8081862..8081939 | 94..171 | 100 | <- | Minus |
2R | 8082015..8082091 | 17..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:07 Download gff for
BO15147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3968346..3968464 | 578..696 | 98 | <- | Minus |
arm_2R | 3968536..3968711 | 402..577 | 100 | <- | Minus |
arm_2R | 3968779..3969008 | 172..401 | 100 | <- | Minus |
arm_2R | 3969367..3969444 | 94..171 | 100 | <- | Minus |
arm_2R | 3969520..3969596 | 17..93 | 100 | | Minus |
BO15147.pep Sequence
Translation from 16 to 712
> BO15147.pep
MSAVAYDSLLSTTAVISTVFQFLSGAMICRKYIQKKSTGDSSGVPFICGF
LSCSFWLRYGVLTNEQSIVLVNIIGSTLFLVYTLIYYVFTVNKRACVKQF
GFVLTVLVVVIVYTNRLEDQRDRMIHVTGIVCCIVTVCFFAAPLASLLHV
IRAKNSESLPLPLIATSFVVSLQWLIYGILISDSFIQIPNFLGCILSLLQ
LGLFVLYPPRSYSGHGYKLVEQAVPFASFLDH
BO15147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slv-PC | 226 | CG8717-PC | 1..226 | 1..226 | 1151 | 100 | Plus |
slv-PB | 226 | CG8717-PB | 1..226 | 1..226 | 1151 | 100 | Plus |
slv-PA | 226 | CG8717-PA | 1..226 | 1..226 | 1151 | 100 | Plus |
CG7272-PA | 228 | CG7272-PA | 11..213 | 6..208 | 212 | 27.2 | Plus |