Clone BO15147 Report

Search the DGRC for BO15147

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:151
Well:47
Vector:pDNR-Dual
Associated Gene/Transcriptslv-RA
Protein status:BO15147.pep: validated full length
Sequenced Size:712

Clone Sequence Records

BO15147.3prime Sequence

710 bp (710 high quality bases) assembled on 2006-06-16

> BO15147.3prime
ATGGTCTAGAAAGCTTGCAAACGGCACTGCCTGTTCGACCAGCTTGTAGC
CGTGGCCGGAGTAGCTTCGCGGCGGGTAGAGGACGAACAGACCCAACTGC
AGCAGCGACAGTATGCAGCCCAGAAAGTTGGGAATCTGGATAAATGAGTC
CGATATCAGTATACCGTAGATAAGCCACTGCAGGCTGACCACGAAGGACG
TGGCTATCAGAGGCAGGGGAAGGCTCTCGGAGTTCTTCGCCCGTATCACA
TGCAGCAAGCTAGCCAGCGGGGCGGCGAAGAAACACACGGTCACGATGCA
GCACACAATTCCTGTGACGTGTATCATTCGATCGCGCTGATCTTCCAGCC
GATTGGTGTAGACAATGACCACCACCAGAACAGTCAGAACAAACCCAAAC
TGCTTTACACAGGCACGTTTGTTGACGGTAAACACATAGTAGATCAGCGT
GTAGACCAGAAAGAGCGTCGATCCGATGATGTTGACCAGCACAATGCTCT
GCTCGTTGGTTAAGACACCGTAGCGCAACCAAAAGCTGCACGATAAGAAT
CCGCATATGAAGGGAACTCCGGAAGAGTCCCCCGTGCTTTTCTTCTGGAT
GTACTTTCGGCATATCATGGCGCCGGAGAGGAACTGGAAGACGGTGCTGA
TCACCGCCGTCGTTGACAGCAGTGAGTCGTAGGCCACCGCCGACATGTCG
ACTGATAACT

BO15147.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8717-PA 681 slv-RA 1..678 696..19 3390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
slv-RC 1247 CG8717-RC 286..963 696..19 3390 100 Minus
slv-RB 1381 CG8717-RB 420..1097 696..19 3390 100 Minus
slv-RA 1091 CG8717-RA 130..807 696..19 3390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8081273..8081503 311..541 1155 100 Plus
2R 25286936 2R 8081031..8081209 136..314 895 100 Plus
2R 25286936 2R 8080843..8080962 19..138 600 100 Plus
2R 25286936 2R 8081860..8081939 540..619 400 100 Plus
2R 25286936 2R 8082015..8082091 620..696 385 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:16:38 has no hits.

BO15147.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:37 Download gff for BO15147.3prime
Subject Subject Range Query Range Percent Splice Strand
slv-PA 1..681 18..696 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:02 Download gff for BO15147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8717-PA 1..681 18..696 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:19 Download gff for BO15147.3prime
Subject Subject Range Query Range Percent Splice Strand
slv-RA 125..812 13..701 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:49:16 Download gff for BO15147.3prime
Subject Subject Range Query Range Percent Splice Strand
slv-RA 125..812 13..701 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:49:16 Download gff for BO15147.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8080838..8080959 13..135 97 <- Plus
2R 8081031..8081206 136..311 100 <- Plus
2R 8081274..8081503 312..541 100 <- Plus
2R 8081862..8081939 542..619 100 <- Plus
2R 8082015..8082096 620..701 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:19 Download gff for BO15147.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3969367..3969444 542..619 100 <- Plus
arm_2R 3969520..3969601 620..701 97   Plus
arm_2R 3968343..3968464 13..135 97 <- Plus
arm_2R 3968536..3968711 136..311 100 <- Plus
arm_2R 3968779..3969008 312..541 100 <- Plus

BO15147.5prime Sequence

710 bp (710 high quality bases) assembled on 2006-06-16

> BO15147.5prime
GAAGTTATCAGTCGACATGTCGGCGGTGGCCTACGACTCACTGCTGTCAA
CGACGGCGGTGATCAGCACCGTCTTCCAGTTCCTCTCCGGCGCCATGATA
TGCCGAAAGTACATCCAGAAGAAAAGCACGGGGGACTCTTCCGGAGTTCC
CTTCATATGCGGATTCTTATCGTGCAGCTTTTGGTTGCGCTACGGTGTCT
TAACCAACGAGCAGAGCATTGTGCTGGTCAACATCATCGGATCGACGCTC
TTTCTGGTCTACACGCTGATCTACTATGTGTTTACCGTCAACAAACGTGC
CTGTGTAAAGCAGTTTGGGTTTGTTCTGACTGTTCTGGTGGTGGTCATTG
TCTACACCAATCGGCTGGAAGATCAGCGCGATCGAATGATACACGTCACA
GGAATTGTGTGCTGCATCGTGACCGTGTGTTTCTTCGCCGCCCCGCTGGC
TAGCTTGCTGCATGTGATACGGGCGAAGAACTCCGAGAGCCTTCCCCTGC
CTCTGATAGCCACGTCCTTCGTGGTCAGCCTGCAGTGGCTTATCTACGGT
ATACTGATATCGGACTCATTTATCCAGATTCCCAACTTTCTGGGCTGCAT
ACTGTCGCTGCTGCAGTTGGGTCTGTTCGTCCTCTACCCGCCGCGAAGCT
ACTCCGGCCACGGCTACAAGCTGGTCGAACAGGCAGTGCCGTTTGCAAGC
TTTCTAGACC

BO15147.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8717-PA 681 slv-RA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
slv-RC 1247 CG8717-RC 286..963 17..694 3390 100 Plus
slv-RB 1381 CG8717-RB 420..1097 17..694 3390 100 Plus
slv-RA 1091 CG8717-RA 130..807 17..694 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8081273..8081503 402..172 1155 100 Minus
2R 25286936 2R 8081031..8081209 577..399 895 100 Minus
2R 25286936 2R 8080843..8080962 694..575 600 100 Minus
2R 25286936 2R 8081860..8081939 173..94 400 100 Minus
2R 25286936 2R 8082015..8082091 93..17 385 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:38:54 has no hits.

BO15147.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:37 Download gff for BO15147.5prime
Subject Subject Range Query Range Percent Splice Strand
slv-PA 1..681 17..695 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:03 Download gff for BO15147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8717-PA 1..681 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:33:42 Download gff for BO15147.5prime
Subject Subject Range Query Range Percent Splice Strand
slv-RA 125..812 12..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:19:20 Download gff for BO15147.5prime
Subject Subject Range Query Range Percent Splice Strand
slv-RA 125..812 12..700 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:19:20 Download gff for BO15147.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8080838..8080959 578..700 97 <- Minus
2R 8081031..8081206 402..577 100 <- Minus
2R 8081274..8081503 172..401 100 <- Minus
2R 8081862..8081939 94..171 100 <- Minus
2R 8082015..8082096 12..93 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:33:42 Download gff for BO15147.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3968343..3968464 578..700 97 <- Minus
arm_2R 3968536..3968711 402..577 100 <- Minus
arm_2R 3968779..3969008 172..401 100 <- Minus
arm_2R 3969367..3969444 94..171 100 <- Minus
arm_2R 3969520..3969601 12..93 97   Minus

BO15147.complete Sequence

712 bp (712 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633362

> BO15147.complete
GAAGTTATCAGTCGACATGTCGGCGGTGGCCTACGACTCACTGCTGTCAA
CGACGGCGGTGATCAGCACCGTCTTCCAGTTCCTCTCCGGCGCCATGATA
TGCCGAAAGTACATCCAGAAGAAAAGCACGGGGGACTCTTCCGGAGTTCC
CTTCATATGCGGATTCTTATCGTGCAGCTTTTGGTTGCGCTACGGTGTCT
TAACCAACGAGCAGAGCATTGTGCTGGTCAACATCATCGGATCGACGCTC
TTTCTGGTCTACACGCTGATCTACTATGTGTTTACCGTCAACAAACGTGC
CTGTGTAAAGCAGTTTGGGTTTGTTCTGACTGTTCTGGTGGTGGTCATTG
TCTACACCAATCGGCTGGAAGATCAGCGCGATCGAATGATACACGTCACA
GGAATTGTGTGCTGCATCGTGACCGTGTGTTTCTTCGCCGCCCCGCTGGC
TAGCTTGCTGCATGTGATACGGGCGAAGAACTCCGAGAGCCTTCCCCTGC
CTCTGATAGCCACGTCCTTCGTGGTCAGCCTGCAGTGGCTTATCTACGGT
ATACTGATATCGGACTCATTTATCCAGATTCCCAACTTTCTGGGCTGCAT
ACTGTCGCTGCTGCAGTTGGGTCTGTTCGTCCTCTACCCGCCGCGAAGCT
ACTCCGGCCACGGCTACAAGCTGGTCGAACAGGCAGTGCCGTTTGCAAGC
TTTCTAGACCAT

BO15147.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
slv-RC 681 CG8717-PC 1..678 17..694 3390 100 Plus
slv-RB 681 CG8717-PB 1..678 17..694 3390 100 Plus
slv-RA 681 CG8717-PA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
slv-RC 1247 CG8717-RC 286..963 17..694 3390 100 Plus
slv-RB 1381 CG8717-RB 420..1097 17..694 3390 100 Plus
slv-RA 1091 CG8717-RA 130..807 17..694 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8081273..8081503 402..172 1155 100 Minus
2R 25286936 2R 8081031..8081209 577..399 895 100 Minus
2R 25286936 2R 8080843..8080962 694..575 600 100 Minus
2R 25286936 2R 8081860..8081939 173..94 400 100 Minus
2R 25286936 2R 8082015..8082091 93..17 385 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:24:20 has no hits.

BO15147.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:09 Download gff for BO15147.complete
Subject Subject Range Query Range Percent Splice Strand
slv-RA 1..681 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:28 Download gff for BO15147.complete
Subject Subject Range Query Range Percent Splice Strand
slv-RA 275..962 12..700 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:07 Download gff for BO15147.complete
Subject Subject Range Query Range Percent Splice Strand
slv-RA 130..807 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:09 Download gff for BO15147.complete
Subject Subject Range Query Range Percent Splice Strand
slv-RA 275..962 12..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:46 Download gff for BO15147.complete
Subject Subject Range Query Range Percent Splice Strand
slv-RA 130..807 17..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:46 Download gff for BO15147.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8080841..8080959 578..696 98 <- Minus
2R 8081031..8081206 402..577 100 <- Minus
2R 8081274..8081503 172..401 100 <- Minus
2R 8081862..8081939 94..171 100 <- Minus
2R 8082015..8082091 17..93 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:07 Download gff for BO15147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3968346..3968464 578..696 98 <- Minus
arm_2R 3968536..3968711 402..577 100 <- Minus
arm_2R 3968779..3969008 172..401 100 <- Minus
arm_2R 3969367..3969444 94..171 100 <- Minus
arm_2R 3969520..3969596 17..93 100   Minus

BO15147.pep Sequence

Translation from 16 to 712

> BO15147.pep
MSAVAYDSLLSTTAVISTVFQFLSGAMICRKYIQKKSTGDSSGVPFICGF
LSCSFWLRYGVLTNEQSIVLVNIIGSTLFLVYTLIYYVFTVNKRACVKQF
GFVLTVLVVVIVYTNRLEDQRDRMIHVTGIVCCIVTVCFFAAPLASLLHV
IRAKNSESLPLPLIATSFVVSLQWLIYGILISDSFIQIPNFLGCILSLLQ
LGLFVLYPPRSYSGHGYKLVEQAVPFASFLDH

BO15147.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
slv-PC 226 CG8717-PC 1..226 1..226 1151 100 Plus
slv-PB 226 CG8717-PB 1..226 1..226 1151 100 Plus
slv-PA 226 CG8717-PA 1..226 1..226 1151 100 Plus
CG7272-PA 228 CG7272-PA 11..213 6..208 212 27.2 Plus