Clone BO15149 Report

Search the DGRC for BO15149

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:151
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Ec-RA
Protein status:BO15149.pep: validated full length
Sequenced Size:730

Clone Sequence Records

BO15149.3prime Sequence

728 bp (728 high quality bases) assembled on 2006-06-16

> BO15149.3prime
ATGGTCTAGAAAGCTTGCGGCGTACACCTGGCGACCTGCGTTCTGGCTGC
GCATGCAGTTGGTCAGGGCGCCGGCGATGAGGAAGACGACCAGGTCGAAG
ATGCAGAGGCCGAGGCCGGACCAGCGGATGATGTCCATGTTGTCGTTCCA
GAACTCCTCGAACTTGGCGCTGCAGCCGGGCCTCGACTGGTAGACCGAGG
GGGTGTTGCATGTGGCCTGGCGGTCCAGGTAGCCGCAGCAGGTTCCGGGA
ACCGAAAGGCCGATGTTGTTGTAGTTGGTATAGCTCGTATCACCGCAGCA
GCCGAAGGTTTCCTCAAGAACGCCCATGGCAGTGTAGTCATGGGAGTCCC
AGAGCAAGTTAACCAGATTGGACATATCGCCCAGGAAGGCAGATCGGTTC
ACGAACACCCAGCACGTAAGCACCAGTTGCAGGATAAAGAGCACAAAAAC
CATGCTGGTGTACGCGCCGGTCATGCAGACACTCTGCCGAAAAATGCCGT
AGCACCCGAAGAAGGACACCACGAAGATGAGGCCTCCCAGGACGGTGACG
CAGATGGGGATGGTGTTCGGGTCCGTCCCACTCCCCGCGACATCGAAGCG
GCTCAGATCGGACAGCATGATCGAGCCCAACACGATCAGTAGGATGCCAA
CGATCAAAAACACGATATTGACAATATATAAAATAAAGTTGACTATTCCC
GATAGACAACCCATGTCGACTGATAACT

BO15149.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12847-PA 699 Tsp42Ec-RA 1..696 714..19 3480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-RA 1025 CG12847-RA 132..827 714..19 3480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7007980..7008424 463..19 2225 100 Minus
2R 25286936 2R 7007725..7007917 655..463 965 100 Minus
2R 25286936 2R 7001437..7001514 655..578 390 100 Minus
2R 25286936 2R 7000285..7000344 714..655 300 100 Minus
2R 25286936 2R 7006573..7006632 714..655 300 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:14:03 has no hits.

BO15149.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:39 Download gff for BO15149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12847-PA 1..699 15..714 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:04 Download gff for BO15149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12847-PA 1..699 15..714 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:51:47 Download gff for BO15149.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 127..834 11..719 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:32:55 Download gff for BO15149.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 127..834 11..719 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:32:55 Download gff for BO15149.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7006568..7006632 655..719 96 -> Minus
2R 7007726..7007917 463..654 100 -> Minus
2R 7007981..7008431 11..462 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:51:47 Download gff for BO15149.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2894073..2894137 655..719 96 -> Minus
arm_2R 2895231..2895422 463..654 100 -> Minus
arm_2R 2895486..2895936 11..462 99   Minus

BO15149.5prime Sequence

679 bp (676 high quality bases) assembled on 2006-06-16

> BO15149.5prime
GAAGTTATCAGTCGACATGGGTTGTCTATCGGGAATAGTCAACTTTATTT
TATATATTGTCAATATCGTGTTTTTGATCGTTGGCATCCTACTGATCGTG
TTGGGCTCGATCATGCTGTCCGATCTGAGCCGCTTCGATGTCGCGGGGAG
TGGGACGGACCCGAACACCATCCCCATCTGCGTCACCGTCCTGGGAGGCC
TCATCTTCGTGGTGTCCTTCTTCGGGTGCTACGGCATTTTTCGGCAGAGT
GTCTGCATGACCGGCGCGTACACCAGCATGGTTTTTGTGCTCTTTATCCT
GCAACTGGTGCTTACGTGCTGGGTGTTCGTGAACCGATCTGCCTTCCTGG
GCGATATGTCCAATCTGGTTAACTTGCTCTGGGACTCCCATGACTACACT
GCCATGGGCGTTCTTGAGGAAACCTTCGGCTGCTGCGGTGATACGAGCTA
TACCAACTACAACAACATCGGCCTTTCGGTTCCCGGAACCTGCTGCGGCT
ACCTGGACCGCCAGGCCACATGCAACACCCCCTCGGTCTACCAGTCGAGG
CCCGGCTGCAGCGCCAAGTTCGAGGAGTTCTGGAACGACAACATGGACAT
CATCCGCTGGTCCGGCCTCGGCCTCTGCATCTTCGACCTGGTCGTCTTCC
TCATCGCCGGCGCCCTGACCAACTGCATG

BO15149.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12847-PA 699 Tsp42Ec-RA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-RA 1025 CG12847-RA 132..794 17..679 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7007980..7008391 268..679 2060 100 Plus
2R 25286936 2R 7007725..7007917 76..268 965 100 Plus
2R 25286936 2R 7001437..7001514 76..153 390 100 Plus
2R 25286936 2R 7000285..7000344 17..76 300 100 Plus
2R 25286936 2R 7006573..7006632 17..76 300 100 Plus
Blast to na_te.dros performed on 2015-02-04 01:59:52 has no hits.

BO15149.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:39 Download gff for BO15149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12847-PA 1..663 17..679 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:05 Download gff for BO15149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12847-PA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:39 Download gff for BO15149.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 127..794 12..679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:57 Download gff for BO15149.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 127..794 12..679 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:57 Download gff for BO15149.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7006568..7006632 12..76 96 -> Plus
2R 7007726..7007917 77..268 100 -> Plus
2R 7007981..7008391 269..679 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:39 Download gff for BO15149.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2894073..2894137 12..76 96 -> Plus
arm_2R 2895231..2895422 77..268 100 -> Plus
arm_2R 2895486..2895896 269..679 100   Plus

BO15149.complete Sequence

730 bp assembled on 2007-10-17

GenBank Submission: FJ633363

> BO15149.complete
GAAGTTATCAGTCGACATGGGTTGTCTATCGGGAATAGTCAACTTTATTT
TATATATTGTCAATATCGTGTTTTTGATCGTTGGCATCCTACTGATCGTG
TTGGGCTCGATCATGCTGTCCGATCTGAGCCGCTTCGATGTCGCGGGGAG
TGGGACGGACCCGAACACCATCCCCATCTGCGTCACCGTCCTGGGAGGCC
TCATCTTCGTGGTGTCCTTCTTCGGGTGCTACGGCATTTTTCGGCAGAGT
GTCTGCATGACCGGCGCGTACACCAGCATGGTTTTTGTGCTCTTTATCCT
GCAACTGGTGCTTACGTGCTGGGTGTTCGTGAACCGATCTGCCTTCCTGG
GCGATATGTCCAATCTGGTTAACTTGCTCTGGGACTCCCATGACTACACT
GCCATGGGCGTTCTTGAGGAAACCTTCGGCTGCTGCGGTGATACGAGCTA
TACCAACTACAACAACATCGGCCTTTCGGTTCCCGGAACCTGCTGCGGCT
ACCTGGACCGCCAGGCCACATGCAACACCCCCTCGGTCTACCAGTCGAGG
CCCGGCTGCAGCGCCAAGTTCGAGGAGTTCTGGAACGACAACATGGACAT
CATCCGCTGGTCCGGCCTCGGCCTCTGCATCTTCGACCTGGTCGTCTTCC
TCATCGCCGGCGCCCTGACCAACTGCATGCGCAGCCAGAACGCAGGTCGC
CAGGTGTACGCCGCAAGCTTTCTAGACCAT

BO15149.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-RA 699 CG12847-PA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-RA 1025 CG12847-RA 132..827 17..712 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7007980..7008424 268..712 2225 100 Plus
2R 25286936 2R 7007725..7007917 76..268 965 100 Plus
2R 25286936 2R 7001437..7001514 76..153 390 100 Plus
2R 25286936 2R 7000285..7000344 17..76 300 100 Plus
2R 25286936 2R 7006573..7006632 17..76 300 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:34:48 has no hits.

BO15149.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:41 Download gff for BO15149.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 1..699 17..716 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:06 Download gff for BO15149.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 122..829 12..720 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:15 Download gff for BO15149.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 132..827 17..714 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:27 Download gff for BO15149.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 127..822 17..714 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:21 Download gff for BO15149.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 132..827 17..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:21 Download gff for BO15149.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7007726..7007917 77..268 100 -> Plus
2R 7006573..7006632 17..76 100 -> Plus
2R 7007981..7008424 269..714 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:15 Download gff for BO15149.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2894078..2894137 17..76 100 -> Plus
arm_2R 2895231..2895422 77..268 100 -> Plus
arm_2R 2895486..2895929 269..714 99   Plus

BO15149.pep Sequence

Translation from 16 to 730

> BO15149.pep
MGCLSGIVNFILYIVNIVFLIVGILLIVLGSIMLSDLSRFDVAGSGTDPN
TIPICVTVLGGLIFVVSFFGCYGIFRQSVCMTGAYTSMVFVLFILQLVLT
CWVFVNRSAFLGDMSNLVNLLWDSHDYTAMGVLEETFGCCGDTSYTNYNN
IGLSVPGTCCGYLDRQATCNTPSVYQSRPGCSAKFEEFWNDNMDIIRWSG
LGLCIFDLVVFLIAGALTNCMRSQNAGRQVYAASFLDH

BO15149.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-PA 232 CG12847-PA 1..232 1..232 1236 100 Plus
CG30160-PA 222 CG30160-PA 1..222 1..224 513 41.9 Plus
Tsp42Eb-PB 222 CG18816-PB 1..222 1..224 513 41.9 Plus
Tsp42Ed-PB 227 CG12846-PB 1..227 1..231 365 34.3 Plus
Tsp42Ed-PA 227 CG12846-PA 1..227 1..231 365 34.3 Plus