Clone Sequence Records
BO15149.3prime Sequence
728 bp (728 high quality bases) assembled on 2006-06-16
> BO15149.3prime
ATGGTCTAGAAAGCTTGCGGCGTACACCTGGCGACCTGCGTTCTGGCTGC
GCATGCAGTTGGTCAGGGCGCCGGCGATGAGGAAGACGACCAGGTCGAAG
ATGCAGAGGCCGAGGCCGGACCAGCGGATGATGTCCATGTTGTCGTTCCA
GAACTCCTCGAACTTGGCGCTGCAGCCGGGCCTCGACTGGTAGACCGAGG
GGGTGTTGCATGTGGCCTGGCGGTCCAGGTAGCCGCAGCAGGTTCCGGGA
ACCGAAAGGCCGATGTTGTTGTAGTTGGTATAGCTCGTATCACCGCAGCA
GCCGAAGGTTTCCTCAAGAACGCCCATGGCAGTGTAGTCATGGGAGTCCC
AGAGCAAGTTAACCAGATTGGACATATCGCCCAGGAAGGCAGATCGGTTC
ACGAACACCCAGCACGTAAGCACCAGTTGCAGGATAAAGAGCACAAAAAC
CATGCTGGTGTACGCGCCGGTCATGCAGACACTCTGCCGAAAAATGCCGT
AGCACCCGAAGAAGGACACCACGAAGATGAGGCCTCCCAGGACGGTGACG
CAGATGGGGATGGTGTTCGGGTCCGTCCCACTCCCCGCGACATCGAAGCG
GCTCAGATCGGACAGCATGATCGAGCCCAACACGATCAGTAGGATGCCAA
CGATCAAAAACACGATATTGACAATATATAAAATAAAGTTGACTATTCCC
GATAGACAACCCATGTCGACTGATAACT
BO15149.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12847-PA | 699 | Tsp42Ec-RA | 1..696 | 714..19 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-RA | 1025 | CG12847-RA | 132..827 | 714..19 | 3480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7007980..7008424 | 463..19 | 2225 | 100 | Minus |
2R | 25286936 | 2R | 7007725..7007917 | 655..463 | 965 | 100 | Minus |
2R | 25286936 | 2R | 7001437..7001514 | 655..578 | 390 | 100 | Minus |
2R | 25286936 | 2R | 7000285..7000344 | 714..655 | 300 | 100 | Minus |
2R | 25286936 | 2R | 7006573..7006632 | 714..655 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:14:03 has no hits.
BO15149.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:39 Download gff for
BO15149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12847-PA | 1..699 | 15..714 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:04 Download gff for
BO15149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12847-PA | 1..699 | 15..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:51:47 Download gff for
BO15149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 127..834 | 11..719 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:32:55 Download gff for
BO15149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 127..834 | 11..719 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:32:55 Download gff for
BO15149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7006568..7006632 | 655..719 | 96 | -> | Minus |
2R | 7007726..7007917 | 463..654 | 100 | -> | Minus |
2R | 7007981..7008431 | 11..462 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:51:47 Download gff for
BO15149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2894073..2894137 | 655..719 | 96 | -> | Minus |
arm_2R | 2895231..2895422 | 463..654 | 100 | -> | Minus |
arm_2R | 2895486..2895936 | 11..462 | 99 | | Minus |
BO15149.5prime Sequence
679 bp (676 high quality bases) assembled on 2006-06-16
> BO15149.5prime
GAAGTTATCAGTCGACATGGGTTGTCTATCGGGAATAGTCAACTTTATTT
TATATATTGTCAATATCGTGTTTTTGATCGTTGGCATCCTACTGATCGTG
TTGGGCTCGATCATGCTGTCCGATCTGAGCCGCTTCGATGTCGCGGGGAG
TGGGACGGACCCGAACACCATCCCCATCTGCGTCACCGTCCTGGGAGGCC
TCATCTTCGTGGTGTCCTTCTTCGGGTGCTACGGCATTTTTCGGCAGAGT
GTCTGCATGACCGGCGCGTACACCAGCATGGTTTTTGTGCTCTTTATCCT
GCAACTGGTGCTTACGTGCTGGGTGTTCGTGAACCGATCTGCCTTCCTGG
GCGATATGTCCAATCTGGTTAACTTGCTCTGGGACTCCCATGACTACACT
GCCATGGGCGTTCTTGAGGAAACCTTCGGCTGCTGCGGTGATACGAGCTA
TACCAACTACAACAACATCGGCCTTTCGGTTCCCGGAACCTGCTGCGGCT
ACCTGGACCGCCAGGCCACATGCAACACCCCCTCGGTCTACCAGTCGAGG
CCCGGCTGCAGCGCCAAGTTCGAGGAGTTCTGGAACGACAACATGGACAT
CATCCGCTGGTCCGGCCTCGGCCTCTGCATCTTCGACCTGGTCGTCTTCC
TCATCGCCGGCGCCCTGACCAACTGCATG
BO15149.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12847-PA | 699 | Tsp42Ec-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-RA | 1025 | CG12847-RA | 132..794 | 17..679 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7007980..7008391 | 268..679 | 2060 | 100 | Plus |
2R | 25286936 | 2R | 7007725..7007917 | 76..268 | 965 | 100 | Plus |
2R | 25286936 | 2R | 7001437..7001514 | 76..153 | 390 | 100 | Plus |
2R | 25286936 | 2R | 7000285..7000344 | 17..76 | 300 | 100 | Plus |
2R | 25286936 | 2R | 7006573..7006632 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:59:52 has no hits.
BO15149.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:39 Download gff for
BO15149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12847-PA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:05 Download gff for
BO15149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12847-PA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:39 Download gff for
BO15149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 127..794 | 12..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:57 Download gff for
BO15149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 127..794 | 12..679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:57 Download gff for
BO15149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7006568..7006632 | 12..76 | 96 | -> | Plus |
2R | 7007726..7007917 | 77..268 | 100 | -> | Plus |
2R | 7007981..7008391 | 269..679 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:39 Download gff for
BO15149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2894073..2894137 | 12..76 | 96 | -> | Plus |
arm_2R | 2895231..2895422 | 77..268 | 100 | -> | Plus |
arm_2R | 2895486..2895896 | 269..679 | 100 | | Plus |
BO15149.complete Sequence
730 bp assembled on 2007-10-17
GenBank Submission: FJ633363
> BO15149.complete
GAAGTTATCAGTCGACATGGGTTGTCTATCGGGAATAGTCAACTTTATTT
TATATATTGTCAATATCGTGTTTTTGATCGTTGGCATCCTACTGATCGTG
TTGGGCTCGATCATGCTGTCCGATCTGAGCCGCTTCGATGTCGCGGGGAG
TGGGACGGACCCGAACACCATCCCCATCTGCGTCACCGTCCTGGGAGGCC
TCATCTTCGTGGTGTCCTTCTTCGGGTGCTACGGCATTTTTCGGCAGAGT
GTCTGCATGACCGGCGCGTACACCAGCATGGTTTTTGTGCTCTTTATCCT
GCAACTGGTGCTTACGTGCTGGGTGTTCGTGAACCGATCTGCCTTCCTGG
GCGATATGTCCAATCTGGTTAACTTGCTCTGGGACTCCCATGACTACACT
GCCATGGGCGTTCTTGAGGAAACCTTCGGCTGCTGCGGTGATACGAGCTA
TACCAACTACAACAACATCGGCCTTTCGGTTCCCGGAACCTGCTGCGGCT
ACCTGGACCGCCAGGCCACATGCAACACCCCCTCGGTCTACCAGTCGAGG
CCCGGCTGCAGCGCCAAGTTCGAGGAGTTCTGGAACGACAACATGGACAT
CATCCGCTGGTCCGGCCTCGGCCTCTGCATCTTCGACCTGGTCGTCTTCC
TCATCGCCGGCGCCCTGACCAACTGCATGCGCAGCCAGAACGCAGGTCGC
CAGGTGTACGCCGCAAGCTTTCTAGACCAT
BO15149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-RA | 699 | CG12847-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-RA | 1025 | CG12847-RA | 132..827 | 17..712 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7007980..7008424 | 268..712 | 2225 | 100 | Plus |
2R | 25286936 | 2R | 7007725..7007917 | 76..268 | 965 | 100 | Plus |
2R | 25286936 | 2R | 7001437..7001514 | 76..153 | 390 | 100 | Plus |
2R | 25286936 | 2R | 7000285..7000344 | 17..76 | 300 | 100 | Plus |
2R | 25286936 | 2R | 7006573..7006632 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:34:48 has no hits.
BO15149.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:41 Download gff for
BO15149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 1..699 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:06 Download gff for
BO15149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 122..829 | 12..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:15 Download gff for
BO15149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 132..827 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:27 Download gff for
BO15149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 127..822 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:21 Download gff for
BO15149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 132..827 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:21 Download gff for
BO15149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7007726..7007917 | 77..268 | 100 | -> | Plus |
2R | 7006573..7006632 | 17..76 | 100 | -> | Plus |
2R | 7007981..7008424 | 269..714 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:15 Download gff for
BO15149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2894078..2894137 | 17..76 | 100 | -> | Plus |
arm_2R | 2895231..2895422 | 77..268 | 100 | -> | Plus |
arm_2R | 2895486..2895929 | 269..714 | 99 | | Plus |
BO15149.pep Sequence
Translation from 16 to 730
> BO15149.pep
MGCLSGIVNFILYIVNIVFLIVGILLIVLGSIMLSDLSRFDVAGSGTDPN
TIPICVTVLGGLIFVVSFFGCYGIFRQSVCMTGAYTSMVFVLFILQLVLT
CWVFVNRSAFLGDMSNLVNLLWDSHDYTAMGVLEETFGCCGDTSYTNYNN
IGLSVPGTCCGYLDRQATCNTPSVYQSRPGCSAKFEEFWNDNMDIIRWSG
LGLCIFDLVVFLIAGALTNCMRSQNAGRQVYAASFLDH
BO15149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-PA | 232 | CG12847-PA | 1..232 | 1..232 | 1236 | 100 | Plus |
CG30160-PA | 222 | CG30160-PA | 1..222 | 1..224 | 513 | 41.9 | Plus |
Tsp42Eb-PB | 222 | CG18816-PB | 1..222 | 1..224 | 513 | 41.9 | Plus |
Tsp42Ed-PB | 227 | CG12846-PB | 1..227 | 1..231 | 365 | 34.3 | Plus |
Tsp42Ed-PA | 227 | CG12846-PA | 1..227 | 1..231 | 365 | 34.3 | Plus |