Clone Sequence Records
BO15150.3prime Sequence
760 bp (717 high quality bases) assembled on 2006-05-29
> BO15150.3prime
ATGGTCTAGAAAGCTTGCGCAAACACCAGTTAAGTGTGGAGCGTTTATGG
TAATAAAACGGTACGGATCGCAGCAGACAGTGTGTCCAACGTCCTTCGTA
TTAAGGTTAAGACCCGGATGACAGGGTATCACATGGCAGATCTGGTTTAA
TGCCTGCTGATTGGGTAGACTTACGTCGTTGTAGGTCAGCATTACCCATT
TATCTCCGGAGAGATGGCTAACTATCTTGTACATCCACTCTGGCACGGGA
ATTTTGTTATTATCCAACAGGTAAATTGGTATCATATTGTTATTGGTATT
ATGTCTTAGTCTATGCACTCCCAATGCCCCAATGCAAACCTTAAGGACAT
CGTAAGTACGCGGTATTTGTACATTATTGATGATTGGATTATCATACAGT
CCCCTAACCATATTGTTCACCCAGGTCTCAACGGCCTTCCATTTGCCACG
ATTAACTCCTCGATATTGGGGGATAGCGTTTAGATACCTGAACGTTGACT
TCTTCAGCTCTGTGGATATAAATGCAGAAGCCGGTGTCATGTGGCCACGA
TCAAATTTACACTGCGGCTGTACTGCGCCCAGGTTAGTGAGCAAACAAGC
TTGTGTTGCTCTTCCCTCGTAGGCATTGTCAAATCCACCACTTAATTGAT
CCGACTGCCAAGTGGGATTGGGACGTGGAACGGTGTTTACGTAGCGATAA
GCCTTGTAGATGGAATGTTGNAACGCCAAGCTGTAGCCATCAAAACAATT
GCGAATAAGT
BO15150.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-PA | 1113 | CG9989-RA | 375..1110 | 754..19 | 3661 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-RA | 1214 | CG9989-RA | 409..1144 | 754..19 | 3669 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28671287..28671951 | 683..19 | 3325 | 100 | Minus |
3R | 32079331 | 3R | 28671166..28671236 | 754..684 | 344 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:55:47 has no hits.
BO15150.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:41 Download gff for
BO15150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-PA | 369..1113 | 15..760 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:07 Download gff for
BO15150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-PA | 369..1113 | 15..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:24 Download gff for
BO15150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 403..1148 | 14..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:40 Download gff for
BO15150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 403..1148 | 14..760 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:40 Download gff for
BO15150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28671160..28671236 | 684..760 | 96 | -> | Minus |
3R | 28671287..28671955 | 14..683 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:24 Download gff for
BO15150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24496882..24496958 | 684..760 | 96 | -> | Minus |
arm_3R | 24497009..24497677 | 14..683 | 99 | | Minus |
BO15150.5prime Sequence
867 bp (789 high quality bases) assembled on 2006-06-16
> BO15150.5prime
GAAGTTATCAGTCGACATGCCCGATCTGAAGTATATGTTGACGATTCTAA
GCCTGTATTTCTTTGTAGGAAGTGTTCAAGCGAATTGCTTAATCGACTTG
GCTCATTTGAATGCCAATTATGTGTACTTAAGCCAAAATAACGGAGTCTA
TGATATTCAGCGCAGTGATATTGTGGAAATCCACCAGACGTTGTATCTGC
TGTGCAATGGAGGACTTCATCGCACCACATTCCTGTGTCGATATGACAGT
GTTTTCAGTCCAGCGCTAAGCTCAGCAGCATGTGCACCACCCGATCCTGT
CGTGGTAAAAGTACCAGATACATCTTGTTCCATTCCGAGTGCTACGTTCG
CCGTAGGATTTTCCTTCAATGGACGCTTTATGGAACTGTATCGCAATTGT
TTTGATGGCTACAGCTTGGCGTTTCAACATTCCATCTACAAGGCTTATCG
CTACGTAAACACCGTTCCACGTCCCAATCCCACTTGGCAGTCGGATCAAT
TAAGTGGTGGATTTGACAATGCCTACGAGGGAAGAGCAACACAAGCTTGT
TTGCTCACTAACCTGGGCGCAGTACAGCCGCAGTGTAAATTTGATCGTGG
CCACATGACACCGGCTTCTGCATTTATATCCACAGAGCTGAAGAAGTCAA
CGTTCAGGTATCTAAACGCTATCCCCCAATATCGAGGAGTTAATCGTGGC
AAATGGAAGGCCGTTGAGACCTGAGTGAACAATATGGTTAGGGGACTGTA
TGATAATCCAATCATCAATAATGTACAAATACCGCGTACTTACGATGTCC
TTAAGGTTTGCATTGGGGCATTGGGAGTGCATAGACTAAGACATAATACC
AATAACAATATGATACC
BO15150.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-PA | 1113 | CG9989-RA | 1..851 | 17..867 | 4230 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-RA | 1214 | CG9989-RA | 35..885 | 17..867 | 4240 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28671287..28671692 | 462..867 | 2015 | 99.8 | Plus |
3R | 32079331 | 3R | 28670838..28671236 | 63..461 | 1995 | 100 | Plus |
3R | 32079331 | 3R | 28670738..28670783 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:50:32 has no hits.
BO15150.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:42 Download gff for
BO15150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:08 Download gff for
BO15150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:51:13 Download gff for
BO15150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 29..885 | 11..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:14 Download gff for
BO15150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 29..885 | 11..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:14 Download gff for
BO15150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28670732..28670783 | 11..62 | 94 | -> | Plus |
3R | 28670838..28671236 | 63..461 | 100 | -> | Plus |
3R | 28671287..28671692 | 462..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:51:13 Download gff for
BO15150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24496454..24496505 | 11..62 | 94 | -> | Plus |
arm_3R | 24496560..24496958 | 63..461 | 100 | -> | Plus |
arm_3R | 24497009..24497414 | 462..867 | 99 | | Plus |
BO15150.complete Sequence
1144 bp (1144 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633364
> BO15150.complete
GAAGTTATCAGTCGACATGCCCGATCTGAAGTATATGTTGACGATTCTAA
GCCTGTATTTCTTTGTAGGAAGTGTTCAAGCGAATTGCTTAATCGACTTG
GCTCATTTGAATGCCAATTATGTGTACTTAAGCCAAAATAACGGAGTCTA
TGATATTCAGCGCAGTGATATTGTGGAAATCCACCAGACGTTGTATCTGC
TGTGCAATGGAGGACTTCATCGCACCACATTCCTGTGTCGATATGACAGT
GTTTTCAGTCCAGCGCTAAGCTCAGCAGCATGTGCACCACCCGATCCTGT
CGTGGTAAAAGTACCAGATACATCTTGTTCCATTCCGAGTGCTACGTTCG
CCGTAGGATTTTCCTTCAATGGACGCTTTATGGAACTGTATCGCAATTGT
TTTGATGGCTACAGCTTGGCGTTTCAACATTCCATCTACAAGGCTTATCG
CTACGTAAACACCGTTCCACGTCCCAATCCCACTTGGCAGTCGGATCAAT
TAAGTGGTGGATTTGACAATGCCTACGAGGGAAGAGCAACACAAGCTTGT
TTGCTCACTAACCTGGGCGCAGTACAGCCGCAGTGTAAATTTGATCGTGG
CCACATGACACCGGCTTCTGCATTTATATCCACAGAGCTGAAGAAGTCAA
CGTTCAGGTATCTAAACGCTATCCCCCAATATCGAGGAGTTAATCGTGGC
AAATGGAAGGCCGTTGAGACCTGGGTGAACAATATGGTTAGGGGACTGTA
TGATAATCCAATCATCAATAATGTACAAATACCGCGTACTTACGATGTCC
TTAAGGTTTGCATTGGGGCATTGGGAGTGCATAGACTAAGACATAATACC
AATAACAATATGATACCAATTTACCTGTTGGATAATAACAAAATTCCCGT
GCCAGAGTGGATGTACAAGATAGTTAGCCATCTCTCCGGAGATAAATGGG
TAATGCTGACCTACAACGACGTAAGTCTACCCAATCAGCAGGCATTAAAC
CAGATCTGCCATGTGATACCCTGTCATCCGGGTCTTAACCTTAATACGAA
GGACGTTGGACACACTGTCTGCTGCGATCCGTACCGTTTTATTACCATAA
ACGCTCCACACTTAACTGGTGTTTGCGCAAGCTTTCTAGACCAT
BO15150.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-RA | 1113 | CG9989-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-RA | 1214 | CG9989-RA | 35..1144 | 17..1126 | 5550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28671287..28671951 | 462..1126 | 3325 | 100 | Plus |
3R | 32079331 | 3R | 28670838..28671236 | 63..461 | 1995 | 100 | Plus |
3R | 32079331 | 3R | 28670738..28670783 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:30:36 has no hits.
BO15150.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:10 Download gff for
BO15150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 1..1113 | 17..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:30 Download gff for
BO15150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 1..1116 | 15..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:36 Download gff for
BO15150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 35..1144 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:11 Download gff for
BO15150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 1..1116 | 15..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:42 Download gff for
BO15150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 35..1144 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:42 Download gff for
BO15150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28670738..28670783 | 17..62 | 100 | -> | Plus |
3R | 28670838..28671236 | 63..461 | 100 | -> | Plus |
3R | 28671287..28671951 | 462..1128 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:36 Download gff for
BO15150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24496460..24496505 | 17..62 | 100 | -> | Plus |
arm_3R | 24496560..24496958 | 63..461 | 100 | -> | Plus |
arm_3R | 24497009..24497673 | 462..1128 | 99 | | Plus |
BO15150.pep Sequence
Translation from 16 to 1144
> BO15150.pep
MPDLKYMLTILSLYFFVGSVQANCLIDLAHLNANYVYLSQNNGVYDIQRS
DIVEIHQTLYLLCNGGLHRTTFLCRYDSVFSPALSSAACAPPDPVVVKVP
DTSCSIPSATFAVGFSFNGRFMELYRNCFDGYSLAFQHSIYKAYRYVNTV
PRPNPTWQSDQLSGGFDNAYEGRATQACLLTNLGAVQPQCKFDRGHMTPA
SAFISTELKKSTFRYLNAIPQYRGVNRGKWKAVETWVNNMVRGLYDNPII
NNVQIPRTYDVLKVCIGALGVHRLRHNTNNNMIPIYLLDNNKIPVPEWMY
KIVSHLSGDKWVMLTYNDVSLPNQQALNQICHVIPCHPGLNLNTKDVGHT
VCCDPYRFITINAPHLTGVCASFLDH
BO15150.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-PA | 370 | CG9989-PA | 1..370 | 1..370 | 2015 | 100 | Plus |
CG33346-PB | 364 | CG33346-PB | 3..357 | 1..370 | 489 | 33.2 | Plus |
CG12917-PB | 356 | CG12917-PB | 7..354 | 3..358 | 335 | 27.7 | Plus |
CG14062-PB | 346 | CG14062-PB | 5..344 | 10..358 | 304 | 28 | Plus |