Clone Sequence Records
BO15157.3prime Sequence
428 bp (428 high quality bases) assembled on 2006-06-16
> BO15157.3prime
ATGGTCTAGAAAGCTTGCAGACGAGGTGCTAGTTTCTGTGGCCACTTCGC
TGTTTTGTTCGGTTGTTGAGTCCGTGGAGGAAACCGCAGACTTTACCAAA
CATGCCTGTTCGCACTGCTCCTTGGATTCGAAGTTGTTCTTGTTGCCGGC
ACATCCACCGTAAACGAACTCCTCGCAGGATTGTGTATCCACGTTGTAGG
CGTAGCGATAGAACAGAGCGAAACAGCGACCGGTTTCCTTGGGCTGATGA
CAGTCCTCCGGAACAGTGAGCTCACTGGCATCAGGCAGGGGTTTGGCCAC
CGCGGGCTCCTCCGCCTTCTCCACGACGACATCCGAGGGAGCTGCACGAA
TTCCGGCTGCCAGGAGCAGAACAGCCGCGAATACTATGAAACTGAAGCTA
TATCTAAAGCACATGTCGACTGATAACT
BO15157.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3604-PA | 399 | CG3604-RA | 1..396 | 414..19 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3604-RB | 631 | CG3604-RB | 97..497 | 419..19 | 1990 | 99.8 | Minus |
CG3604-RA | 571 | CG3604-RA | 37..437 | 419..19 | 1990 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3697376..3697776 | 19..419 | 1990 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:56:07 has no hits.
BO15157.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:41 Download gff for
BO15157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3604-PA | 1..399 | 15..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:07 Download gff for
BO15157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3604-RA | 37..440 | 15..419 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:35 Download gff for
BO15157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3604-RA | 37..440 | 15..419 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:35 Download gff for
BO15157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3697378..3697776 | 21..419 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:07 Download gff for
BO15157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3697378..3697776 | 21..419 | 99 | | Plus |
BO15157.5prime Sequence
428 bp (428 high quality bases) assembled on 2006-06-16
> BO15157.5prime
GAAGTTATCAGTCGACATGTGCTTTAGATATAGCTTCAGTTTCATAGTAT
TCGCGGCTGTTCTGCTCCTGGCAGCCGGAATTCGTGCAGCTCCCTCGGAT
GTCGTCGTGGAGAAGGCGGAGGAGCCCGCGGTGGCCAAACCCCTGCCTGA
TGCCAGTGAGCTCACTGTTCCGGAGGACTGTCATCAGCCCAAGGAAACCG
GTCGCTGTTTCGCTCTGTTCTATCGCTACGCCTACAACGTGGATACACAA
TCCTGCGAGGAGTTCGTTTACGGTGGATGTGCCGGCAACAAGAACAACTT
CGAATCCAAGGAGCAGTGCGAACAGGCATGTTTGGTAAAGTCTGCGGTTT
CCTCCACGGACTCAACAACCGAACAAAACAGCGAAGTGGCCACAGAAACT
AGCACCTCGTCTGCAAGCTTTCTAGACC
BO15157.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3604-PA | 399 | CG3604-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3604-RB | 631 | CG3604-RB | 97..497 | 12..412 | 1990 | 99.8 | Plus |
CG3604-RA | 571 | CG3604-RA | 37..437 | 12..412 | 1990 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3697376..3697776 | 412..12 | 1990 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:14:33 has no hits.
BO15157.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:48 Download gff for
BO15157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3604-PA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:17 Download gff for
BO15157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3604-PA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:09 Download gff for
BO15157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3604-RA | 37..440 | 12..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:40 Download gff for
BO15157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3604-RA | 37..440 | 12..416 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:40 Download gff for
BO15157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3697378..3697776 | 12..410 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:09 Download gff for
BO15157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3697378..3697776 | 12..410 | 99 | | Minus |
BO15157.complete Sequence
430 bp (430 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633368
> BO15157.complete
GAAGTTATCAGTCGACATGTGCTTTAGATATAGCTTCAGTTTCATAGTAT
TCGCGGCTGTTCTGCTCCTGGCAGCCGGAATTCGTGCAGCTCCCTCGGAT
GTCGTCGTGGAGAAGGCGGAGGAGCCCGCGGTGGCCAAACCCCTGCCTGA
TGCCAGTGAGCTCACTGTTCCGGAGGACTGTCATCAGCCCAAGGAAACCG
GTCGCTGTTTCGCTCTGTTCTATCGCTACGCCTACAACGTGGATACACAA
TCCTGCGAGGAGTTCGTTTACGGTGGATGTGCCGGCAACAAGAACAACTT
CGAATCCAAGGAGCAGTGCGAACAGGCATGTTTGGTAAAGTCTGCGGTTT
CCTCCACGGACTCAACAACCGAACAAAACAGCGAAGTGGCCACAGAAACT
AGCACCTCGTCTGCAAGCTTTCTAGACCAT
BO15157.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3604-RB | 399 | CG3604-PB | 1..396 | 17..412 | 1980 | 100 | Plus |
CG3604-RA | 399 | CG3604-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3604-RB | 631 | CG3604-RB | 97..497 | 12..412 | 1990 | 99.8 | Plus |
CG3604-RA | 571 | CG3604-RA | 37..437 | 12..412 | 1990 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3697376..3697776 | 412..12 | 1990 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:47:10 has no hits.
BO15157.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:10 Download gff for
BO15157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3604-RA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:46 Download gff for
BO15157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3604-RA | 97..500 | 12..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:15 Download gff for
BO15157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3604-RA | 42..437 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:11 Download gff for
BO15157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3604-RA | 2..405 | 12..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:53 Download gff for
BO15157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3604-RA | 42..437 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:53 Download gff for
BO15157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3697374..3697771 | 17..414 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:15 Download gff for
BO15157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3697374..3697771 | 17..414 | 99 | | Minus |
BO15157.pep Sequence
Translation from 16 to 430
> BO15157.pep
MCFRYSFSFIVFAAVLLLAAGIRAAPSDVVVEKAEEPAVAKPLPDASELT
VPEDCHQPKETGRCFALFYRYAYNVDTQSCEEFVYGGCAGNKNNFESKEQ
CEQACLVKSAVSSTDSTTEQNSEVATETSTSSASFLDH
BO15157.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3604-PB | 132 | CG3604-PB | 1..132 | 1..132 | 685 | 100 | Plus |
CG3604-PA | 132 | CG3604-PA | 1..132 | 1..132 | 685 | 100 | Plus |
CG10031-PA | 129 | CG10031-PA | 56..128 | 36..108 | 155 | 39.7 | Plus |
CG2816-PB | 84 | CG2816-PB | 31..81 | 55..105 | 152 | 51 | Plus |
CG13748-PA | 113 | CG13748-PA | 8..110 | 9..105 | 146 | 35 | Plus |