Clone Sequence Records
BO15161.3prime Sequence
770 bp (732 high quality bases) assembled on 2006-06-16
> BO15161.3prime
ATGGTCTAGAAAGCTTGCAGGAGCCAGCCGTTCGTACACCCAACCATCCT
CTCCTTTGTGAACCAGTTTGCTGTCGACTTCGGATTCTACTCCTCCACCT
CGTCTAAAGCGGATGCGATCGTGGAGCCGATCGGTCTGACCCTGCCAGAA
CTCAATGAGGTCGGGACGCACCAAGTAGCCACCCCAGTTGGGCAGCGGCA
CCTCGCCATCGGGACCCAGTTCTAGCTTAATTGCCGCCTCCACGTCGTCC
AAGTAGCTGCGCGACGGAATCCGCTGGCTCTGCGGACTGGCAGCGGCTCC
GATTTGGCTGGCTCTTGGTCGCTGGTGGAAGTACTTGAGGGAGTCTTCCA
CCGAGATCTTCTCAGCCACGCCCTCGATGCGGACACTTCGCCGCAAAGGG
AGCCAGTAGAAGGATATGGCTACATAGGGATTGGACTTGATGTCCTCAGC
CTTGCGGCTACCGTAGTTCGTGAAGAAGGTGAATCCCTCGGCGGTGGCTT
CTTTAACCAGCACATAGCGATTGGAAGGCCTACCCTCCGCACTCACGGTA
GCCAGGGCGGCGGCATTGGGCTCCAAGATCTCCGGGGTTTTCAGCGCCAA
CTCCAGCCAGTCTCGGAATACACAGAAGGGATTCTTCACCTTGATGTTAT
CCTCCAGGAAGGCGTCCTTGCGCTCACAGTACTTCAGACGAAGTGCCGAA
AGTGGCACCTCCGAGGCACCTTGGCTCATCCTTCGAATTGTTTGCAGCAA
CTTCATGTCGACTGATAACT
BO15161.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31472-PA | 741 | CG31472-RA | 1..738 | 756..19 | 3690 | 100 | Minus |
CG31472-PB | 714 | CG31472-RB | 1..711 | 729..19 | 3555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgll-RA | 1253 | CG31472-RA | 137..874 | 756..19 | 3690 | 100 | Minus |
sgll-RB | 1314 | CG31472-RB | 199..935 | 755..19 | 3685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:29:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7810856..7811533 | 696..19 | 3390 | 100 | Minus |
3R | 32079331 | 3R | 7810730..7810789 | 755..696 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:29:11 has no hits.
BO15161.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:42 Download gff for
BO15161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-PA | 1..741 | 18..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:05 Download gff for
BO15161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-RA | 106..848 | 13..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:46 Download gff for
BO15161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgll-RA | 137..879 | 13..756 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:46 Download gff for
BO15161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7810726..7810789 | 696..758 | 98 | -> | Minus |
3R | 7810857..7811538 | 13..695 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:05 Download gff for
BO15161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3636448..3636511 | 696..758 | 98 | -> | Minus |
arm_3R | 3636579..3637260 | 13..695 | 99 | | Minus |
BO15161.5prime Sequence
712 bp (711 high quality bases) assembled on 2006-06-16
> BO15161.5prime
GAAGTTATCAGTCGACATGAAGTTGCTGCAAACAATTCGAAGGATGAGCC
AAGGTGCCTCGGAGGTGCCACTTTCGGCACTTCGTCTGAAGTACTGTGAG
CGCAAGGACGCCTTCCTGGAGGATAACATCAAGGTGAAGAATCCCTTCTG
TGTATTCCGAGACTGGCTGGAGTTGGCGCTGAAAACCCCGGAGATCTTGG
AGCCCAATGCCGCCGCCCTGGCTACCGTGAGTGCGGAGGGTAGGCCTTCC
AATCGCTATGTGCTGGTTAAAGAAGCCACCGCCGAGGGATTCACCTTCTT
CACGAACTACGGTAGCCGCAAGGCTGAGGACATCAAGTCCAATCCCTATG
TAGCCATATCCTTCTACTGGCTCCCTTTGCGGCGAAGTGTCCGCATCGAG
GGCGTGGCTGAGAAGATCTCGGTGGAAGACTCCCTCAAGTACTTCCACCA
GCGACCAAGAGCCAGCCAAATCGGAGCCGCTGCCAGTCCGCAGAGCCAGC
GGATTCCGTCGCGCAGCTACTTGGACGACGTGGAGGCGGCAATTAAGCTA
GAACTGGGTCCCGATGGCGAGGTGCCGCTGCCCAACTGGGGTGGCTACTT
GGTGCGTCCCGACCTCATTGAGTTCTGGCAGGGTCAGACCGATCGGCTCC
ACGATCGCATCCGCTTTAGACGAGGTGGAGGAGTAGAATCCGAAGTCGAC
AGCAAACTGGTT
BO15161.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31472-PA | 741 | CG31472-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
CG31472-PB | 714 | CG31472-RB | 1..660 | 44..703 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgll-RA | 1253 | CG31472-RA | 137..832 | 17..712 | 3480 | 100 | Plus |
sgll-RB | 1314 | CG31472-RB | 199..893 | 18..712 | 3475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7810856..7811491 | 77..712 | 3180 | 100 | Plus |
3R | 32079331 | 3R | 7810730..7810789 | 18..77 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:14:19 has no hits.
BO15161.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:54 Download gff for
BO15161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-PA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:24 Download gff for
BO15161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-PA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:44:51 Download gff for
BO15161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-RA | 106..801 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:48 Download gff for
BO15161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgll-RA | 137..832 | 17..712 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:48 Download gff for
BO15161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7810726..7810789 | 15..77 | 98 | -> | Plus |
3R | 7810857..7811491 | 78..712 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:44:51 Download gff for
BO15161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3636448..3636511 | 15..77 | 98 | -> | Plus |
arm_3R | 3636579..3637213 | 78..712 | 100 | | Plus |
BO15161.complete Sequence
772 bp (772 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633370
> BO15161.complete
GAAGTTATCAGTCGACATGAAGTTGCTGCAAACAATTCGAAGGATGAGCC
AAGGTGCCTCGGAGGTGCCACTTTCGGCACTTCGTCTGAAGTACTGTGAG
CGCAAGGACGCCTTCCTGGAGGATAACATCAAGGTGAAGAATCCCTTCTG
TGTATTCCGAGACTGGCTGGAGTTGGCGCTGAAAACCCCGGAGATCTTGG
AGCCCAATGCCGCCGCCCTGGCTACCGTGAGTGCGGAGGGTAGGCCTTCC
AATCGCTATGTGCTGGTTAAAGAAGCCACCGCCGAGGGATTCACCTTCTT
CACGAACTACGGTAGCCGCAAGGCTGAGGACATCAAGTCCAATCCCTATG
TAGCCATATCCTTCTACTGGCTCCCTTTGCGGCGAAGTGTCCGCATCGAG
GGCGTGGCTGAGAAGATCTCGGTGGAAGACTCCCTCAAGTACTTCCACCA
GCGACCAAGAGCCAGCCAAATCGGAGCCGCTGCCAGTCCGCAGAGCCAGC
GGATTCCGTCGCGCAGCTACTTGGACGACGTGGAGGCGGCAATTAAGCTA
GAACTGGGTCCCGATGGCGAGGTGCCGCTGCCCAACTGGGGTGGCTACTT
GGTGCGTCCCGACCTCATTGAGTTCTGGCAGGGTCAGACCGATCGGCTCC
ACGATCGCATCCGCTTTAGACGAGGTGGAGGAGTAGAATCCGAAGTCGAC
AGCAAACTGGTTCACAAAGGAGAGGATGGTTGGGTGTACGAACGGCTGGC
TCCTGCAAGCTTTCTAGACCAT
BO15161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgll-RA | 741 | CG31472-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
sgll-RB | 714 | CG31472-PB | 1..711 | 44..754 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgll-RA | 1253 | CG31472-RA | 137..874 | 17..754 | 3690 | 100 | Plus |
sgll-RB | 1314 | CG31472-RB | 199..935 | 18..754 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7810856..7811533 | 77..754 | 3390 | 100 | Plus |
3R | 32079331 | 3R | 7810730..7810789 | 18..77 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:33:54 has no hits.
BO15161.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:55 Download gff for
BO15161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-RA | 1..741 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:09 Download gff for
BO15161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-RA | 106..848 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:01 Download gff for
BO15161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-RA | 106..843 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:55 Download gff for
BO15161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-RA | 106..848 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:56 Download gff for
BO15161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgll-RA | 137..874 | 17..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:56 Download gff for
BO15161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7810728..7810789 | 17..77 | 98 | -> | Plus |
3R | 7810857..7811533 | 78..756 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:01 Download gff for
BO15161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3636450..3636511 | 17..77 | 98 | -> | Plus |
arm_3R | 3636579..3637255 | 78..756 | 99 | | Plus |
BO15161.pep Sequence
Translation from 16 to 772
> BO15161.pep
MKLLQTIRRMSQGASEVPLSALRLKYCERKDAFLEDNIKVKNPFCVFRDW
LELALKTPEILEPNAAALATVSAEGRPSNRYVLVKEATAEGFTFFTNYGS
RKAEDIKSNPYVAISFYWLPLRRSVRIEGVAEKISVEDSLKYFHQRPRAS
QIGAAASPQSQRIPSRSYLDDVEAAIKLELGPDGEVPLPNWGGYLVRPDL
IEFWQGQTDRLHDRIRFRRGGGVESEVDSKLVHKGEDGWVYERLAPASFL
DH
BO15161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgll-PA | 246 | CG31472-PA | 1..246 | 1..246 | 1279 | 100 | Plus |
sgll-PB | 237 | CG31472-PB | 1..237 | 10..246 | 1237 | 100 | Plus |
CG31473-PA | 257 | CG31473-PA | 39..252 | 35..242 | 289 | 33.6 | Plus |