Clone Sequence Records
BO15163.3prime Sequence
786 bp (716 high quality bases) assembled on 2006-05-29
> BO15163.3prime
ATGGTCTAGAAAGCTTGCAGTGACGACGGCCGATCGCTTGTCACGATTCT
TTCCACGTGTTATGGAGCGTGCCTTGAATGCAGCAGCATTCACAAGGTGC
CGCTCCAGCTTGGTCGGCTTGACCTTGGCGTTTCCATTGATGCCTGTGTT
CGTGGGTCGTGGTCCCAGCTGGAAGATGTCACGGATGAACTCGTTCTCCT
GCAGCTGCGAGGTCATCCCGGGACCCATGACAGTGCACATGGCCGAATAC
TGATGATGGATGGACCAGGAATCTAGTGTCAGCGACTCGGTACCGAAACG
AATGCTAATCTCTGGGGAAATGTCCTCCTCCAGGTATCGCAGCACATCAC
GGAAGGTGGCACGCTGGGCCTTGCGATCGCGCTTGGCGCGGTACTTATGC
GAATCCGTGGCCAGCTGCTTGACGGCCTCCGATAACTCAGCGATGTCATC
TTCTAGGAAATCCTCTTCGTGAGCACGTCCCGACTCCAGAATTAAAGCAA
TGGTCTCGCCAGCGGCCATGCGGACGTCCAAATGTGTAGATTGCAAGAGA
CCCAAGAACTTCTTAATAGATGGAAACATGTTTTGGCCAGTGGTCATCAA
CGAAACAAAATCCCCCGAAGGTATAAGTGTTAGTAGAAGCCCCCAGGCGT
TCAAGGCCTCCGCATGGAAAGTCCCAGCTTCGGCGGTGACGGATACCGGT
GTCTTGTCATCGCCACGCAAATAACTGCCTGCAAAGATGGCCTCGAAGCT
CTGCATCAGGTGTACCCACTCCCCAACATCCTCGCA
BO15163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-PA | 1278 | CG31694-RA | 508..1275 | 786..19 | 3790 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-RA | 2639 | CG31694-RA | 1325..2092 | 786..19 | 3810 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2870688..2870932 | 327..571 | 1225 | 100 | Plus |
2L | 23513712 | 2L | 2869323..2869552 | 100..329 | 1150 | 100 | Plus |
2L | 23513712 | 2L | 2871004..2871218 | 572..786 | 1045 | 99.1 | Plus |
2L | 23513712 | 2L | 2869174..2869255 | 19..100 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:48:57 has no hits.
BO15163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:55 Download gff for
BO15163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-PA | 509..1278 | 15..785 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:25 Download gff for
BO15163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-PA | 509..1278 | 15..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:07:28 Download gff for
BO15163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 1326..2099 | 12..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:51 Download gff for
BO15163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 1326..2099 | 12..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:51 Download gff for
BO15163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2869167..2869254 | 12..99 | 96 | <- | Plus |
2L | 2869323..2869550 | 100..327 | 100 | <- | Plus |
2L | 2870689..2870932 | 328..571 | 100 | <- | Plus |
2L | 2871004..2871217 | 572..785 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:07:28 Download gff for
BO15163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2869167..2869254 | 12..99 | 96 | <- | Plus |
arm_2L | 2869323..2869550 | 100..327 | 100 | <- | Plus |
arm_2L | 2870689..2870932 | 328..571 | 100 | <- | Plus |
arm_2L | 2871004..2871217 | 572..785 | 99 | | Plus |
BO15163.5prime Sequence
838 bp (728 high quality bases) assembled on 2006-06-16
> BO15163.5prime
GAAGTTATCAGTCGACATGCCGCGACGCAACAAGAAATCAGCAGCAGGCA
GAGGCCGCACCAATGACTCCAATTCTGAGGACGAGTCCTTTGACAATGTG
AGCGTTTACTCTCATATGTCCGAAGTCGCATCCTCGGAGGCCACCGACGA
GCTGGCCAATGAGCGTTTCGAGGAGAAGTTCGAGAAGGCCCTGGAACAGG
CCACCGAGAAGTCGGCCCAGACACGTGTGCAGGCTCTGCAAGCGATTTGC
GAACTGCTCATGCACCGCTACATGCCGGACTTCGTGGAGGACCGCAAGAT
GACCCTGATGGATTTCGTGGAGAAGAGCATCCGTCGAGGCAAGGGCCAGG
AGCAGGTGTGGGGCGCACGACTCGCGCCCCTGCTGGTGCTCCAAATGGGC
GGGGATGAAGGCATATCCAAGGCGATGAATCAATTCCTGTTGAACACCGT
TCAGGACAAGTCCGTGGGCTTCGATGCCCGTGCCAAGTGCTGCACAGCTG
TGGGATTGTTGAGCTTCCTGGGCTGCGAGGATGTTGGGGAGTTGGTACAC
CTGATGCAGAGCTTCGAGGCCATCTTCGCAGGCAGTTATTTGCGTGGCGA
TGACAAGACACCGGTATCCGTCACCGCCGAAGCTGGGACTTTCCATGCGG
AGGCCTTGAACGCCTGGGGGCTTCTACTAACACTTATACCTTCGGGGGAT
TTTGTTTCGTTGATGACCACTGGCCAAAACATGTTTCCATCTATTAAGAA
GTTCTTGGGTCTCTTGCAATCTACACATTTGGGACGTCCGCATGGGCGCT
GGCGAGACCATTGCTTTAATTCTGGGAGCCGGACGTGC
BO15163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-PA | 1278 | CG31694-RA | 1..766 | 17..782 | 3830 | 100 | Plus |
CG31694-PA | 1278 | CG31694-RA | 765..808 | 782..825 | 195 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-RA | 2639 | CG31694-RA | 816..1638 | 15..838 | 4020 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:57:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2871004..2871690 | 738..52 | 3435 | 100 | Minus |
2L | 23513712 | 2L | 2870834..2870932 | 838..739 | 375 | 94 | Minus |
2L | 23513712 | 2L | 2873635..2873674 | 54..15 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 10:57:46 has no hits.
BO15163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:56 Download gff for
BO15163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-PA | 1..821 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:27 Download gff for
BO15163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-PA | 1..821 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:39:34 Download gff for
BO15163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 811..1638 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:01 Download gff for
BO15163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 811..1638 | 9..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:01 Download gff for
BO15163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2870834..2870932 | 739..838 | 95 | <- | Minus |
2L | 2871004..2871688 | 54..738 | 100 | <- | Minus |
2L | 2873636..2873679 | 9..53 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:39:34 Download gff for
BO15163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2870834..2870932 | 739..838 | 95 | <- | Minus |
arm_2L | 2871004..2871688 | 54..738 | 100 | <- | Minus |
arm_2L | 2873636..2873679 | 9..53 | 95 | | Minus |
BO15163.complete Sequence
1309 bp (1309 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633371
> BO15163.complete
GAAGTTATCAGTCGACATGCCGCGACGCAACAAGAAATCAGCAGCAGGCA
GAGGCCGCACCAATGACTCCAATTCTGAGGACGAGTCCTTTGACAATGTG
AGCGTTTACTCTCATATGTCCGAAGTCGCATCCTCGGAGGCCACCGACGA
GCTGGCCAATGAGCGTTTCGAGGAGAAGTTCGAGAAGGCCCTGGAACAGG
CCACCGAGAAGTCGGCCCAGACACGTGTGCAGGCTCTGCAAGCGATTTGC
GAACTGCTCATGCACCGCTACATGCCGGACTTCGTGGAGGACCGCAAGAT
GACCCTGATGGATTTCGTGGAGAAGAGCATCCGTCGAGGCAAGGGCCAGG
AGCAGGTGTGGGGCGCACGACTCGCGCCCCTGCTGGTGCTCCAAATGGGC
GGGGATGAAGGCATATCCAAGGCGATGAATCAATTCCTGTTGAACACCGT
TCAGGACAAGTCCGTGGGCTTCGATGCCCGTGCCAAGTGCTGCACAGCTG
TGGGATTGTTGAGCTTCCTGGGCTGCGAGGATGTTGGGGAGTTGGTACAC
CTGATGCAGAGCTTCGAGGCCATCTTCGCAGGCAGTTATTTGCGTGGCGA
TGACAAGACACCGGTATCCGTCACCGCCGAAGCTGGGACTTTCCATGCGG
AGGCCTTGAACGCCTGGGGGCTTCTACTAACACTTATACCTTCGGGGGAT
TTTGTTTCGTTGATGACCACTGGCCAAAACATGTTTCCATCTATTAAGAA
GTTCTTGGGTCTCTTGCAATCTACACATTTGGACGTCCGCATGGCCGCTG
GCGAGACCATTGCTTTAATTCTGGAGTCGGGACGTGCTCACGAAGAGGAT
TTCCTAGAAGATGACATCGCTGAGTTATCGGAGGCCGTCAAGCAGCTGGC
CACGGATTCGCATAAGTACCGCGCCAAGCGCGATCGCAAGGCCCAGCGTG
CCACCTTCCGTGATGTGCTGCGATACCTGGAGGAGGACATTTCCCCAGAG
ATTAGCATTCGTTTCGGTACCGAGTCGCTGACACTAGATTCCTGGTCCAT
CCATCATCAGTATTCGGCCATGTGCACTGTCATGGGTCCCGGGATGACCT
CGCAGCTGCAGGAGAACGAGTTCATCCGTGACATCTTCCAGCTGGGACCA
CGACCCACGAACACAGGCATCAATGGAAACGCCAAGGTCAAGCCGACCAA
GCTGGAGCGGCACCTTGTGAATGCTGCTGCATTCAAGGCACGCTCCATAA
CACGTGGAAAGAATCGTGACAAGCGATCGGCCGTCGTCACTGCAAGCTTT
CTAGACCAT
BO15163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-RA | 1278 | CG31694-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-RA | 2639 | CG31694-RA | 816..2092 | 15..1291 | 6385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2871004..2871690 | 738..52 | 3435 | 100 | Minus |
2L | 23513712 | 2L | 2870688..2870932 | 983..739 | 1225 | 100 | Minus |
2L | 23513712 | 2L | 2869323..2869552 | 1210..981 | 1150 | 100 | Minus |
2L | 23513712 | 2L | 2869174..2869255 | 1291..1210 | 410 | 100 | Minus |
2L | 23513712 | 2L | 2873635..2873674 | 54..15 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:55:24 has no hits.
BO15163.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:56 Download gff for
BO15163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 1..1278 | 17..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:11 Download gff for
BO15163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 840..2128 | 9..1298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:41 Download gff for
BO15163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 818..2092 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:57 Download gff for
BO15163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 840..2128 | 9..1298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:52 Download gff for
BO15163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 818..2092 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:52 Download gff for
BO15163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2869172..2869254 | 1211..1293 | 97 | <- | Minus |
2L | 2869323..2869550 | 983..1210 | 100 | <- | Minus |
2L | 2870689..2870932 | 739..982 | 100 | <- | Minus |
2L | 2871004..2871688 | 54..738 | 100 | <- | Minus |
2L | 2873636..2873672 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:41 Download gff for
BO15163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2869172..2869254 | 1211..1293 | 97 | <- | Minus |
arm_2L | 2869323..2869550 | 983..1210 | 100 | <- | Minus |
arm_2L | 2870689..2870932 | 739..982 | 100 | <- | Minus |
arm_2L | 2871004..2871688 | 54..738 | 100 | <- | Minus |
arm_2L | 2873636..2873672 | 17..53 | 100 | | Minus |
BO15163.pep Sequence
Translation from 16 to 1309
> BO15163.pep
MPRRNKKSAAGRGRTNDSNSEDESFDNVSVYSHMSEVASSEATDELANER
FEEKFEKALEQATEKSAQTRVQALQAICELLMHRYMPDFVEDRKMTLMDF
VEKSIRRGKGQEQVWGARLAPLLVLQMGGDEGISKAMNQFLLNTVQDKSV
GFDARAKCCTAVGLLSFLGCEDVGELVHLMQSFEAIFAGSYLRGDDKTPV
SVTAEAGTFHAEALNAWGLLLTLIPSGDFVSLMTTGQNMFPSIKKFLGLL
QSTHLDVRMAAGETIALILESGRAHEEDFLEDDIAELSEAVKQLATDSHK
YRAKRDRKAQRATFRDVLRYLEEDISPEISIRFGTESLTLDSWSIHHQYS
AMCTVMGPGMTSQLQENEFIRDIFQLGPRPTNTGINGNAKVKPTKLERHL
VNAAAFKARSITRGKNRDKRSAVVTASFLDH
BO15163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-PA | 425 | CG31694-PA | 1..425 | 1..425 | 2160 | 100 | Plus |