Clone Sequence Records
BO15167.3prime Sequence
864 bp (701 high quality bases) assembled on 2006-06-16
> BO15167.3prime
ATGGTCTAGAAAGCTTGCGTCTGAATTGACGGCATTTGATTGTGTCTGGT
TATCGTCACAACGACGATGGTGCCTGTAGAAGCACTTGTTTCCAAAGGGA
CATTTGCCCAAGCCCCCATTGAAGTACTTGCAATCCTTGGCGCCCATTGC
CGCGCGATATTCGCTTAGCAACTTGTCCTTCTCCTCCTTTGTATCCACCC
AGTAGGCACTAGGGCACACGAATTCCGAAAAGACGCGACATTCGGGGCAA
CCACGCGTCACAGTGGCCTCAAATTGATGGGCCTGACGCCATGTGCGAAT
GCACGTCAAACAGAATATGTGCTTGCACTTGGACAAGATGCCAAAGCGAC
GTTCACGTCCCTTCTTCTCCACGACGGTATCGAAACAAATGCCGCACATC
TTGTCCTTGGATCTGGCTATTGCAAAAGATAGCTCCATCGCCTGCTCGTG
CTGCTCCAGACACTCACGATTGTGCGCACGGCGTTGGTTCTGATCCATCG
GGTGGAGGCAGTAAAGGTCGCACATCTTGCAAATCTCCATGTGAAGTGGA
TACGAGCACTTACTGCCCCAGATACAGCTGCCACCATATGGACAAATATC
CTGGACACCTTCAGTTGCTTGGAAATCGGCAGAATTGGCTTTGTACCTGG
GAACAAACTCTGGTGCATTTGCCCAGGTCATCTGGCGACTGTAGCTACTG
GTGGAGGCCACCACTTGCTCATTCTCCACGACTTCATCCGCGATTTCCGA
TATCTGCGGACTCTGGTTGTCATTTGGTGTCGTCTCGTCGTGCGAGAATC
GGCATAAATCACCAAAACGACAAATTCCAAGCAAATGGAAGCGACAGATT
GTTTGACTAACGCG
BO15167.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-PA | 858 | CG5347-RA | 113..855 | 761..19 | 3690 | 99.8 | Minus |
CG5334-PA | 633 | CG5334-RA | 381..553 | 262..90 | 815 | 98.8 | Minus |
CG5334-PA | 633 | CG5334-RA | 209..363 | 434..280 | 450 | 91.6 | Minus |
CG7184-PA | 1161 | Mkrn1-RA | 709..756 | 327..280 | 140 | 91.6 | Minus |
CG7184-PB | 1161 | Mkrn1-RB | 709..756 | 327..280 | 140 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-RA | 1210 | CG5347-RA | 119..959 | 859..19 | 4205 | 100 | Minus |
CG5334-RA | 992 | CG5334-RA | 251..619 | 443..75 | 1425 | 92.4 | Minus |
Mkrn1-RC | 2229 | CG7184-RC | 696..1171 | 545..70 | 745 | 77.4 | Minus |
CG5334-RA | 992 | CG5334-RA | 81..202 | 850..726 | 245 | 82.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14776892..14777732 | 859..19 | 4205 | 100 | Minus |
X | 23542271 | X | 14775558..14775926 | 443..75 | 1425 | 92.4 | Minus |
3L | 28110227 | 3L | 21532353..21532630 | 268..545 | 460 | 77.7 | Plus |
3L | 28110227 | 3L | 21531848..21532028 | 70..250 | 320 | 78.5 | Plus |
3L | 28110227 | 3L | 18722609..18722851 | 175..417 | 270 | 74.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:38:01 has no hits.
BO15167.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:59 Download gff for
BO15167.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-PA | 113..858 | 16..761 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:31 Download gff for
BO15167.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-PA | 113..858 | 16..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:50:36 Download gff for
BO15167.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 114..959 | 19..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:22 Download gff for
BO15167.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 114..959 | 19..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:22 Download gff for
BO15167.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14776887..14777732 | 19..864 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:50:36 Download gff for
BO15167.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14670920..14671765 | 19..864 | 99 | | Minus |
BO15167.5prime Sequence
859 bp (708 high quality bases) assembled on 2006-06-16
> BO15167.5prime
GAAGTTATCAGTCGACATGTCGTATCGCCGTAGTCAAACAATCTGTCGCT
TCCATTTGCTTGGAATTTGTCGTTTTGGTGATTTATGCCGATTCTCGCAC
GACGAGACGACACCAAATGACAACCAGAGTCCGCAGATATCGGAAATCGC
GGATGAAGTCGTGGAGAATGAGCAAGTGGTGGCCTCCACCAGTAGCTACA
GTCGCCAGATGACCTGGGCAAATGCACCAGAGTTTGTTCCCAGGTACAAA
GCCAATTCTGCCGATTTCCAAGCAACTGAAGGTGTCCAGGATATTTGTCC
ATATGGTGGCAGCTGTATCTGGGGCAGTAAGTGCTCGTATCCACTTCACA
TGGAGATTTGCAAGATGTGCGACCTTTACTGCCTCCACCCGATGGATCAG
AACCAACGCCGTGCGCACAATCGTGAGTGTCTGGAGCAGCACGAGCAGGC
GATGGAGCTATCTTTTGCAATAGCCAGATCCAAGGACAAGATGTGCGGCA
TTTGTTTCGATACCGTCGTGGAGAAGAAGGGACGTGAACGTCGCTTTGGC
ATCTTGTCCAAGTGCAAGCACATATTCTGTTTGACGTGCATTCGCACATG
GCGTCAGGCCCATCAATTTGAGGCCACTGTGACGCGTGGTTGCCCCGAAT
GTCGCGTCTTTTCGGAATTCGTGTGCCCTAGTGCCTACTGGGTGGATACA
AAGGAGGAGAAGGACAAGTTGCTAAGCGAATATCGCGCGGCAATGGGCGC
CAAGGATTGCAAGTACTTCAATGGGGGCTTGGGCAAATGTCCCTTTTGGA
AACAAGTGCTTCTACAGGCACCATCGTCGTTGTGACGATAACCAGACACA
ATCAAATGG
BO15167.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-PA | 858 | CG5347-RA | 1..709 | 17..725 | 3495 | 99.7 | Plus |
CG5334-PA | 633 | CG5334-RA | 209..363 | 456..610 | 450 | 91.6 | Plus |
CG5334-PA | 633 | CG5334-RA | 381..478 | 628..725 | 390 | 95.9 | Plus |
CG7184-PA | 1161 | Mkrn1-RA | 709..756 | 563..610 | 140 | 91.6 | Plus |
CG7184-PB | 1161 | Mkrn1-RB | 709..756 | 563..610 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-RA | 1210 | CG5347-RA | 105..945 | 17..858 | 4185 | 99.9 | Plus |
CG5334-RA | 992 | CG5334-RA | 251..619 | 447..816 | 1405 | 92.2 | Plus |
Mkrn1-RC | 2229 | CG7184-RC | 696..1171 | 345..821 | 725 | 77.2 | Plus |
CG5334-RA | 992 | CG5334-RA | 81..202 | 40..164 | 245 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14776878..14777718 | 17..858 | 4160 | 99.9 | Plus |
X | 23542271 | X | 14775558..14775926 | 447..816 | 1380 | 92.2 | Plus |
3L | 28110227 | 3L | 21532353..21532630 | 622..345 | 460 | 77.7 | Minus |
3L | 28110227 | 3L | 21531848..21532028 | 821..640 | 275 | 78 | Minus |
3L | 28110227 | 3L | 18722609..18722851 | 715..473 | 270 | 74.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:17:58 has no hits.
BO15167.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:00 Download gff for
BO15167.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-PA | 1..712 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:33 Download gff for
BO15167.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-PA | 1..712 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:29:16 Download gff for
BO15167.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 99..945 | 7..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:10:58 Download gff for
BO15167.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 99..945 | 7..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:10:58 Download gff for
BO15167.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14776872..14777718 | 7..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:29:16 Download gff for
BO15167.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14670905..14671751 | 7..859 | 99 | | Plus |
BO15167.complete Sequence
889 bp (889 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633373
> BO15167.complete
GAAGTTATCAGTCGACATGTCGTATCGCCGTAGTCAAACAATCTGTCGCT
TCCATTTGCTTGGAATTTGTCGTTTTGGTGATTTATGCCGATTCTCGCAC
GACGAGACGACACCAAATGACAACCAGAGTCCGCAGATATCGGAAATCGC
GGATGAAGTCGTGGAGAATGAGCAAGTGGTGGCCTCCACCAGTAGCTACA
GTCGCCAGATGACCTGGGCAAATGCACCAGAGTTTGTTCCCAGGTACAAA
GCCAATTCTGCCGATTTCCAAGCAACTGAAGGTGTCCAGGATATTTGTCC
ATATGGTGGCAGCTGTATCTGGGGCAGTAAGTGCTCGTATCCACTTCACA
TGGAGATTTGCAAGATGTGCGACCTTTACTGCCTCCACCCGATGGATCAG
AACCAACGCCGTGCGCACAATCGTGAGTGTCTGGAGCAGCACGAGCAGGC
GATGGAGCTATCTTTTGCAATAGCCAGATCCAAGGACAAGATGTGCGGCA
TTTGTTTCGATACCGTCGTGGAGAAGAAGGGACGTGAACGTCGCTTTGGC
ATCTTGTCCAAGTGCAAGCACATATTCTGTTTGACGTGCATTCGCACATG
GCGTCAGGCCCATCAATTTGAGGCCACTGTGACGCGTGGTTGCCCCGAAT
GTCGCGTCTTTTCGGAATTCGTGTGCCCTAGTGCCTACTGGGTGGATACA
AAGGAGGAGAAGGACAAGTTGCTAAGCGAATATCGCGCGGCAATGGGCGC
CAAGGATTGCAAGTACTTCAATGGGGGCTTGGGCAAATGTCCCTTTGGAA
ACAAGTGCTTCTACAGGCACCATCGTCGTTGTGACGATAACCAGACACAA
TCAAATGCCGTCAATTCAGACGCAAGCTTTCTAGACCAT
BO15167.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-RA | 858 | CG5347-PA | 1..855 | 17..871 | 4275 | 100 | Plus |
CG5334-RA | 633 | CG5334-PA | 200..568 | 447..815 | 1425 | 92.4 | Plus |
Mkrn1-RC | 1161 | CG7184-PC | 491..966 | 345..820 | 745 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-RA | 1210 | CG5347-RA | 105..959 | 17..871 | 4275 | 100 | Plus |
CG5334-RA | 992 | CG5334-RA | 251..619 | 447..815 | 1425 | 92.4 | Plus |
Mkrn1-RC | 2229 | CG7184-RC | 696..1171 | 345..820 | 745 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14776878..14777732 | 17..871 | 4275 | 100 | Plus |
X | 23542271 | X | 14775558..14775926 | 447..815 | 1425 | 92.4 | Plus |
3L | 28110227 | 3L | 21532353..21532630 | 622..345 | 460 | 77.7 | Minus |
3L | 28110227 | 3L | 21531848..21532028 | 820..640 | 320 | 78.5 | Minus |
3L | 28110227 | 3L | 18722609..18722851 | 715..473 | 270 | 74.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:02:50 has no hits.
BO15167.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:00 Download gff for
BO15167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:14 Download gff for
BO15167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 99..959 | 7..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:22 Download gff for
BO15167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 105..959 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:00 Download gff for
BO15167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 99..959 | 7..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:05 Download gff for
BO15167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 105..959 | 17..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:05 Download gff for
BO15167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14776878..14777732 | 17..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:22 Download gff for
BO15167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14670911..14671765 | 17..873 | 99 | | Plus |
BO15167.pep Sequence
Translation from 16 to 889
> BO15167.pep
MSYRRSQTICRFHLLGICRFGDLCRFSHDETTPNDNQSPQISEIADEVVE
NEQVVASTSSYSRQMTWANAPEFVPRYKANSADFQATEGVQDICPYGGSC
IWGSKCSYPLHMEICKMCDLYCLHPMDQNQRRAHNRECLEQHEQAMELSF
AIARSKDKMCGICFDTVVEKKGRERRFGILSKCKHIFCLTCIRTWRQAHQ
FEATVTRGCPECRVFSEFVCPSAYWVDTKEEKDKLLSEYRAAMGAKDCKY
FNGGLGKCPFGNKCFYRHHRRCDDNQTQSNAVNSDASFLDH
BO15167.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-PA | 285 | CG5347-PA | 1..285 | 1..285 | 1588 | 100 | Plus |
Mkrn1-PC | 386 | CG7184-PC | 14..322 | 1..268 | 901 | 56.6 | Plus |
Mkrn1-PB | 386 | CG7184-PB | 14..322 | 1..268 | 901 | 56.6 | Plus |
Mkrn1-PA | 386 | CG7184-PA | 14..322 | 1..268 | 901 | 56.6 | Plus |
CG5334-PA | 210 | CG5334-PA | 67..208 | 144..285 | 611 | 76.1 | Plus |