Clone Sequence Records
BO15173.3prime Sequence
689 bp (689 high quality bases) assembled on 2006-06-16
> BO15173.3prime
ATGGTCTAGAAAGCTTGCGCGACGACGGTAGACGCAGGCGTCGATGTTGT
TGTTCACCTCCTGGAGACCGAGCACCGCCTGCGAGGATGCGGAGTGGGTG
CACACATTGCCATCGGCGAAGACGTCCGGGATGCGTTCGCTGGTCGACTG
ACGGATGGTCTTGATGGAGGAGCGCGCACTGACCAAATAGACGGTGGCCT
GGACATAGAACTTGGCCAAGCAGGTCTGCTTCAGCACGGAGTTCTTGTAC
GAGTTGCATTTGTTGTAGGTGCTGGCCAGGCTGTAGCCACCGTAGACCAG
TTGCTGGGTGGCGGCACTCACATCGGAGGCAATTTCGGCGGATGTCTGGG
CGGCCACAACGCCGCAGGCGTACAGATCCTCATGGGCGGCATTCACGATG
CGGGTGATCTCCTCATCCTCGGCGGCCACGCATTCGGGACTCTCCTCGCG
ACGCGACTCCACCTGCTCGACGGCTGCCTCCAATTCGTTTTGCGGCTCCA
GGACGATCTCTTCGTACTGACTCAACAGTACCTCGCCGGTCGCCTTGCCA
ATGCTGGTCATCTCATCCACCACGCTGCGCACCTGGGCGTCCAGCTGGCT
GGGCATGTCCAGCGGTTGGGCCCATCCACTGGCAACGAAAAGGGTTAGGA
TAATGGCAACGGTGTATTGCTTCATGTCGACTGATAACT
BO15173.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12057-PA | 660 | CG12057-RA | 1..657 | 675..19 | 3285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12057-RB | 800 | CG12057-RB | 27..685 | 677..19 | 3295 | 100 | Minus |
| CG12057-RA | 892 | CG12057-RA | 27..685 | 677..19 | 3295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9191683..9192341 | 677..19 | 3295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:21:26 has no hits.
BO15173.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:05 Download gff for
BO15173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-PA | 1..660 | 18..675 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:39 Download gff for
BO15173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-PA | 1..660 | 18..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:51:04 Download gff for
BO15173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-RA | 21..685 | 19..686 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:33:20 Download gff for
BO15173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-RA | 21..685 | 19..686 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:33:20 Download gff for
BO15173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9191677..9192341 | 19..686 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:51:04 Download gff for
BO15173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9085710..9086374 | 19..686 | 99 | | Minus |
BO15173.5prime Sequence
689 bp (688 high quality bases) assembled on 2006-06-16
> BO15173.5prime
GAAGTTATCAGTCGACATGAAGCAATACACCGTTGCCATTATCCTAACCC
TTTTCGTTGCCAGTGGATGGGCCCAACCGCTGGACATGCCCAGCCAGCTG
GACGCCCAGGTGCGCAGCGTGGTGGATGAGATGACCAGCATTGGCAAGGC
GACCGGCGAGGTACTGTTGAGTCAGTACGAAGAGATCGTCCTGGAGCCGC
AAAACGAATTGGAGGCAGCCGTCGAGCAGGTGGAGTCGCGTCGCGAGGAG
AGTCCCGAATGCGTGGCCGCCGAGGATGAGGAGATCACCCGCATCGTGAA
TGCCGCCCATGAGGATCTGTACGCCTGCGGCGTTGTGGCCGCCCAGACAT
CCGCCGAAATTGCCTCCGATGTGAGTGCCGCCACCCAGCAACTGGTCTAC
GGTGGCTACAGCCTGGCCAGCACCTACAACAAATGCAACTCGTACAAGAA
CTCCGTGCTGAAGCAGACCTGCTTGGCCAAGTTCTATGTCCAGGCCACCG
TCTATTTGGTCAGTGCGCGCTCCTCCATCAAGACCATCCGTCAGTCGACC
AGCGAACGCATCCCGGACGTCTTCGCCGATGGCAATGTGTGCACCCACTC
CGCATCCTCGCAGGCGGTGCTCGGTCTCCAGGAGGTGAACAACAACATCG
ACGCCTGCGTCTACCGTCGTCGCGCAAGCTTTCTAGACC
BO15173.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12057-PA | 660 | CG12057-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12057-RB | 800 | CG12057-RB | 27..685 | 15..673 | 3295 | 100 | Plus |
| CG12057-RA | 892 | CG12057-RA | 27..685 | 15..673 | 3295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9191683..9192341 | 15..673 | 3295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 07:51:04 has no hits.
BO15173.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:06 Download gff for
BO15173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-PA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:41 Download gff for
BO15173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-PA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:14 Download gff for
BO15173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-RA | 21..685 | 6..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:15:26 Download gff for
BO15173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-RA | 21..685 | 6..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:15:26 Download gff for
BO15173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9191677..9192341 | 6..673 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:14 Download gff for
BO15173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9085710..9086374 | 6..673 | 99 | | Plus |
BO15173.complete Sequence
691 bp (691 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633374
> BO15173.complete
GAAGTTATCAGTCGACATGAAGCAATACACCGTTGCCATTATCCTAACCC
TTTTCGTTGCCAGTGGATGGGCCCAACCGCTGGACATGCCCAGCCAGCTG
GACGCCCAGGTGCGCAGCGTGGTGGATGAGATGACCAGCATTGGCAAGGC
GACCGGCGAGGTACTGTTGAGTCAGTACGAAGAGATCGTCCTGGAGCCGC
AAAACGAATTGGAGGCAGCCGTCGAGCAGGTGGAGTCGCGTCGCGAGGAG
AGTCCCGAATGCGTGGCCGCCGAGGATGAGGAGATCACCCGCATCGTGAA
TGCCGCCCATGAGGATCTGTACGCCTGCGGCGTTGTGGCCGCCCAGACAT
CCGCCGAAATTGCCTCCGATGTGAGTGCCGCCACCCAGCAACTGGTCTAC
GGTGGCTACAGCCTGGCCAGCACCTACAACAAATGCAACTCGTACAAGAA
CTCCGTGCTGAAGCAGACCTGCTTGGCCAAGTTCTATGTCCAGGCCACCG
TCTATTTGGTCAGTGCGCGCTCCTCCATCAAGACCATCCGTCAGTCGACC
AGCGAACGCATCCCGGACGTCTTCGCCGATGGCAATGTGTGCACCCACTC
CGCATCCTCGCAGGCGGTGCTCGGTCTCCAGGAGGTGAACAACAACATCG
ACGCCTGCGTCTACCGTCGTCGCGCAAGCTTTCTAGACCAT
BO15173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12057-RB | 660 | CG12057-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
| CG12057-RA | 660 | CG12057-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12057-RB | 800 | CG12057-RB | 27..685 | 15..673 | 3295 | 100 | Plus |
| CG12057-RA | 892 | CG12057-RA | 27..685 | 15..673 | 3295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9191683..9192341 | 15..673 | 3295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:24:39 has no hits.
BO15173.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:01 Download gff for
BO15173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-RA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:16 Download gff for
BO15173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-RA | 5..669 | 6..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:17 Download gff for
BO15173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-RA | 29..685 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:01 Download gff for
BO15173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-RA | 5..669 | 6..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:53 Download gff for
BO15173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12057-RA | 29..685 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:53 Download gff for
BO15173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9191685..9192341 | 17..675 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:17 Download gff for
BO15173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9085718..9086374 | 17..675 | 99 | | Plus |
BO15173.pep Sequence
Translation from 16 to 691
> BO15173.pep
MKQYTVAIILTLFVASGWAQPLDMPSQLDAQVRSVVDEMTSIGKATGEVL
LSQYEEIVLEPQNELEAAVEQVESRREESPECVAAEDEEITRIVNAAHED
LYACGVVAAQTSAEIASDVSAATQQLVYGGYSLASTYNKCNSYKNSVLKQ
TCLAKFYVQATVYLVSARSSIKTIRQSTSERIPDVFADGNVCTHSASSQA
VLGLQEVNNNIDACVYRRRASFLDH
BO15173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12057-PB | 219 | CG12057-PB | 1..219 | 1..219 | 1091 | 100 | Plus |
| CG12057-PA | 219 | CG12057-PA | 1..219 | 1..219 | 1091 | 100 | Plus |
| CG12115-PA | 263 | CG12115-PA | 72..258 | 28..214 | 230 | 30.9 | Plus |
