Clone BO15175 Report

Search the DGRC for BO15175

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:151
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCpr78E-RA
Protein status:BO15175.pep: validated full length
Sequenced Size:445

Clone Sequence Records

BO15175.3prime Sequence

443 bp (443 high quality bases) assembled on 2006-06-16

> BO15175.3prime
ATGGTCTAGAAAGCTTGCGACCTTAGGAGGCTTAGCATAGTCAAGATCTG
GTTGGGGCACCTGCTCGCTGACCTGCTTGGCGGCCAGCGAAATCTGGGGC
AGGATTGCTCCGCCCTCTGGTACAAATCCGTGGTCATCGGCCTTGTAGGT
GACGGTCACCTCCTGTCCGTTGGCATCGAAGTAGGAGTAGGAGCCGCTGA
TCTCCAGGTACTCGTTCTCGGTGCCTTGGTTTCTGACCACGGCCTCCTCC
CTTCTGTGGGTGCCGTCCTCGCCGAGGTAAGAGAAGTTGTACGATCCATC
CTCGTGCTTTTCGTGAGATGATTCGAGAATGGCCACCGGTGGCTGGGTGG
TGGATGTGACGTGGTCCACTGGAGCACTCAGCACGACGGCCGTGCAAAGG
GACAGGGCGACGATGAGAATCTTAAACATGTCGACTGATAACT

BO15175.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7160-PA 414 CG7160-RA 1..411 429..19 2055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78E-RA 463 CG7160-RA 24..435 430..19 2060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21666480..21666878 19..417 1995 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:03:36 has no hits.

BO15175.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:07 Download gff for BO15175.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7160-PA 1..414 15..429 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:42 Download gff for BO15175.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7160-PA 1..414 15..429 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:02:15 Download gff for BO15175.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 15..437 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:31 Download gff for BO15175.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 15..437 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:31 Download gff for BO15175.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21666477..21666878 15..417 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:02:15 Download gff for BO15175.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21659577..21659978 15..417 99 <- Plus

BO15175.5prime Sequence

443 bp (443 high quality bases) assembled on 2006-06-16

> BO15175.5prime
GAAGTTATCAGTCGACATGTTTAAGATTCTCATCGTCGCCCTGTCCCTTT
GCACGGCCGTCGTGCTGAGTGCTCCAGTGGACCACGTCACATCCACCACC
CAGCCACCGGTGGCCATTCTCGAATCATCTCACGAAAAGCACGAGGATGG
ATCGTACAACTTCTCTTACCTCGGCGAGGACGGCACCCACAGAAGGGAGG
AGGCCGTGGTCAGAAACCAAGGCACCGAGAACGAGTACCTGGAGATCAGC
GGCTCCTACTCCTACTTCGATGCCAACGGACAGGAGGTGACCGTCACCTA
CAAGGCCGATGACCACGGATTTGTACCAGAGGGCGGAGCAATCCTGCCCC
AGATTTCGCTGGCCGCCAAGCAGGTCAGCGAGCAGGTGCCCCAACCAGAT
CTTGACTATGCTAAGCCTCCTAAGGTCGCAAGCTTTCTAGACC

BO15175.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7160-PA 414 CG7160-RA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78E-RA 463 CG7160-RA 24..435 16..427 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21666480..21666878 427..29 1995 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:14:02 has no hits.

BO15175.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:08 Download gff for BO15175.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7160-PA 1..414 17..431 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:44 Download gff for BO15175.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7160-PA 1..414 17..431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:44:49 Download gff for BO15175.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 9..431 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:47 Download gff for BO15175.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 9..431 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:47 Download gff for BO15175.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21666477..21666878 29..431 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:44:49 Download gff for BO15175.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21659577..21659978 29..431 99 <- Minus

BO15175.complete Sequence

445 bp (445 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633375

> BO15175.complete
GAAGTTATCAGTCGACATGTTTAAGATTCTCATCGTCGCCCTGTCCCTTT
GCACGGCCGTCGTGCTGAGTGCTCCAGTGGACCACGTCACATCCACCACC
CAGCCACCGGTGGCCATTCTCGAATCATCTCACGAAAAGCACGAGGATGG
ATCGTACAACTTCTCTTACCTCGGCGAGGACGGCACCCACAGAAGGGAGG
AGGCCGTGGTCAGAAACCAAGGCACCGAGAACGAGTACCTGGAGATCAGC
GGCTCCTACTCCTACTTCGATGCCAACGGACAGGAGGTGACCGTCACCTA
CAAGGCCGATGACCACGGATTTGTACCAGAGGGCGGAGCAATCCTGCCCC
AGATTTCGCTGGCCGCCAAGCAGGTCAGCGAGCAGGTGCCCCAACCAGAT
CTTGACTATGCTAAGCCTCCTAAGGTCGCAAGCTTTCTAGACCAT

BO15175.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78E-RA 414 CG7160-PA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78E-RA 463 CG7160-RA 24..435 16..427 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21666480..21666878 427..29 1995 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:05:43 has no hits.

BO15175.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:02 Download gff for BO15175.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 1..414 17..431 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:18 Download gff for BO15175.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 9..431 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:52 Download gff for BO15175.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 31..435 23..429 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:02 Download gff for BO15175.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 9..431 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:23 Download gff for BO15175.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 31..435 23..429 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:23 Download gff for BO15175.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21666478..21666880 23..429 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:52 Download gff for BO15175.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21659578..21659980 23..429 98   Minus

BO15175.pep Sequence

Translation from 16 to 445

> BO15175.pep
MFKILIVALSLCTAVVLSAPVDHVTSTTQPPVAILESSHEKHEDGSYNFS
YLGEDGTHRREEAVVRNQGTENEYLEISGSYSYFDANGQEVTVTYKADDH
GFVPEGGAILPQISLAAKQVSEQVPQPDLDYAKPPKVASFLDH

BO15175.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78E-PA 137 CG7160-PA 1..137 1..137 708 100 Plus
Cpr47Eb-PA 214 CG13224-PA 1..136 1..133 227 42.3 Plus
Cpr47Ec-PA 131 CG9077-PA 1..118 1..122 210 42.3 Plus
Cpr47Ef-PD 601 CG13214-PD 121..231 19..121 199 39.6 Plus
Cpr47Ef-PC 612 CG13214-PC 121..231 19..121 199 39.6 Plus