Clone Sequence Records
BO15175.3prime Sequence
443 bp (443 high quality bases) assembled on 2006-06-16
> BO15175.3prime
ATGGTCTAGAAAGCTTGCGACCTTAGGAGGCTTAGCATAGTCAAGATCTG
GTTGGGGCACCTGCTCGCTGACCTGCTTGGCGGCCAGCGAAATCTGGGGC
AGGATTGCTCCGCCCTCTGGTACAAATCCGTGGTCATCGGCCTTGTAGGT
GACGGTCACCTCCTGTCCGTTGGCATCGAAGTAGGAGTAGGAGCCGCTGA
TCTCCAGGTACTCGTTCTCGGTGCCTTGGTTTCTGACCACGGCCTCCTCC
CTTCTGTGGGTGCCGTCCTCGCCGAGGTAAGAGAAGTTGTACGATCCATC
CTCGTGCTTTTCGTGAGATGATTCGAGAATGGCCACCGGTGGCTGGGTGG
TGGATGTGACGTGGTCCACTGGAGCACTCAGCACGACGGCCGTGCAAAGG
GACAGGGCGACGATGAGAATCTTAAACATGTCGACTGATAACT
BO15175.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7160-PA | 414 | CG7160-RA | 1..411 | 429..19 | 2055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78E-RA | 463 | CG7160-RA | 24..435 | 430..19 | 2060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21666480..21666878 | 19..417 | 1995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:03:36 has no hits.
BO15175.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:07 Download gff for
BO15175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7160-PA | 1..414 | 15..429 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:42 Download gff for
BO15175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7160-PA | 1..414 | 15..429 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:02:15 Download gff for
BO15175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78E-RA | 18..438 | 15..437 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:31 Download gff for
BO15175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78E-RA | 18..438 | 15..437 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:31 Download gff for
BO15175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21666477..21666878 | 15..417 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:02:15 Download gff for
BO15175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21659577..21659978 | 15..417 | 99 | <- | Plus |
BO15175.5prime Sequence
443 bp (443 high quality bases) assembled on 2006-06-16
> BO15175.5prime
GAAGTTATCAGTCGACATGTTTAAGATTCTCATCGTCGCCCTGTCCCTTT
GCACGGCCGTCGTGCTGAGTGCTCCAGTGGACCACGTCACATCCACCACC
CAGCCACCGGTGGCCATTCTCGAATCATCTCACGAAAAGCACGAGGATGG
ATCGTACAACTTCTCTTACCTCGGCGAGGACGGCACCCACAGAAGGGAGG
AGGCCGTGGTCAGAAACCAAGGCACCGAGAACGAGTACCTGGAGATCAGC
GGCTCCTACTCCTACTTCGATGCCAACGGACAGGAGGTGACCGTCACCTA
CAAGGCCGATGACCACGGATTTGTACCAGAGGGCGGAGCAATCCTGCCCC
AGATTTCGCTGGCCGCCAAGCAGGTCAGCGAGCAGGTGCCCCAACCAGAT
CTTGACTATGCTAAGCCTCCTAAGGTCGCAAGCTTTCTAGACC
BO15175.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7160-PA | 414 | CG7160-RA | 1..411 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78E-RA | 463 | CG7160-RA | 24..435 | 16..427 | 2060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21666480..21666878 | 427..29 | 1995 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:14:02 has no hits.
BO15175.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:08 Download gff for
BO15175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7160-PA | 1..414 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:44 Download gff for
BO15175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7160-PA | 1..414 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:44:49 Download gff for
BO15175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78E-RA | 18..438 | 9..431 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:47 Download gff for
BO15175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78E-RA | 18..438 | 9..431 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:47 Download gff for
BO15175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21666477..21666878 | 29..431 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:44:49 Download gff for
BO15175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21659577..21659978 | 29..431 | 99 | <- | Minus |
BO15175.complete Sequence
445 bp (445 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633375
> BO15175.complete
GAAGTTATCAGTCGACATGTTTAAGATTCTCATCGTCGCCCTGTCCCTTT
GCACGGCCGTCGTGCTGAGTGCTCCAGTGGACCACGTCACATCCACCACC
CAGCCACCGGTGGCCATTCTCGAATCATCTCACGAAAAGCACGAGGATGG
ATCGTACAACTTCTCTTACCTCGGCGAGGACGGCACCCACAGAAGGGAGG
AGGCCGTGGTCAGAAACCAAGGCACCGAGAACGAGTACCTGGAGATCAGC
GGCTCCTACTCCTACTTCGATGCCAACGGACAGGAGGTGACCGTCACCTA
CAAGGCCGATGACCACGGATTTGTACCAGAGGGCGGAGCAATCCTGCCCC
AGATTTCGCTGGCCGCCAAGCAGGTCAGCGAGCAGGTGCCCCAACCAGAT
CTTGACTATGCTAAGCCTCCTAAGGTCGCAAGCTTTCTAGACCAT
BO15175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78E-RA | 414 | CG7160-PA | 1..411 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78E-RA | 463 | CG7160-RA | 24..435 | 16..427 | 2060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21666480..21666878 | 427..29 | 1995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:05:43 has no hits.
BO15175.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:02 Download gff for
BO15175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78E-RA | 1..414 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:18 Download gff for
BO15175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78E-RA | 18..438 | 9..431 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:52 Download gff for
BO15175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78E-RA | 31..435 | 23..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:02 Download gff for
BO15175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78E-RA | 18..438 | 9..431 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:23 Download gff for
BO15175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78E-RA | 31..435 | 23..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:23 Download gff for
BO15175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21666478..21666880 | 23..429 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:52 Download gff for
BO15175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21659578..21659980 | 23..429 | 98 | | Minus |
BO15175.pep Sequence
Translation from 16 to 445
> BO15175.pep
MFKILIVALSLCTAVVLSAPVDHVTSTTQPPVAILESSHEKHEDGSYNFS
YLGEDGTHRREEAVVRNQGTENEYLEISGSYSYFDANGQEVTVTYKADDH
GFVPEGGAILPQISLAAKQVSEQVPQPDLDYAKPPKVASFLDH
BO15175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78E-PA | 137 | CG7160-PA | 1..137 | 1..137 | 708 | 100 | Plus |
Cpr47Eb-PA | 214 | CG13224-PA | 1..136 | 1..133 | 227 | 42.3 | Plus |
Cpr47Ec-PA | 131 | CG9077-PA | 1..118 | 1..122 | 210 | 42.3 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 121..231 | 19..121 | 199 | 39.6 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 121..231 | 19..121 | 199 | 39.6 | Plus |