Clone Sequence Records
BO15177.3prime Sequence
744 bp (689 high quality bases) assembled on 2006-05-29
> BO15177.3prime
ATGGTCTAGAAAGCTTGCTATATTAATTCCCGTCCACTTTTCACTTTCCG
CCCATAGGAATTGGGCATCATCGTCATACTGGGCGGCCGAGCCCACGTGC
TTCTGCTTGCAATCGCTGAAGTATCTTCCAGATACTTTTTCCAAACTGGG
ATCCAGGGCAGCGTACAGGGTCGTCTGTGCGCCATTCCTAGCCGTCTTTA
TGAATATCCATATAATAGGGGCTATGAGCAATTTTCCAAACCACGAACCC
AAAAAGGGTGTATTGCGGAACAGTTCCGTGTTTACTACTCCGGGATGTAG
GGCATTTACCGTGACCCCTGTTCCGCTCAGGCGTTTCGCCAACTCCCTGG
TGAAGAGGACGTTGGCCAATTTGCTCTGACAGTAGGCCATCTTTCTGTCA
TAGGACTTTTCGCTGTTCAGGTCGTCACGCTTAATCCTTCCGAAGCGGTG
AGCAATGCTGGACAGGACCACAACGCGACTGGGCGCGGAACTCTTCAGGA
CATCGAGAAGCAGAAGTGTGAGGAGGAAGTGGCCCATGTGATTCACTCCG
ATTTGCATTTCAAATCCGTCCTCCGTCAGCATTTTGGGGCAGTCCATAAT
GCCGGCGTTGTTGATAAGAATGTGAAGCTTGTTTTGCTCCCGCTTAAAGC
CAGCAGCGAAGTTCCTAATGGACTTCATGGAGCACAGGTCCAATTGGCGT
GCGAAGATGTTCTGGTTGTTGGTCGCCTTTGATGATCTCCCGAC
BO15177.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-PA | 978 | CG2070-RA | 268..975 | 726..19 | 3540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-RB | 1381 | CG2070-RB | 433..1157 | 744..19 | 3605 | 99.9 | Minus |
CG2070-RA | 1105 | CG2070-RA | 306..1030 | 744..19 | 3605 | 99.9 | Minus |
CG2065-RB | 1233 | CG2065-RB | 368..822 | 724..270 | 385 | 72.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7662498..7662915 | 650..233 | 2090 | 100 | Minus |
2R | 25286936 | 2R | 7662971..7663184 | 232..19 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 7662336..7662429 | 744..650 | 425 | 98.9 | Minus |
2R | 25286936 | 2R | 7664643..7664797 | 424..270 | 235 | 76.8 | Minus |
2R | 25286936 | 2R | 7666755..7666908 | 424..271 | 185 | 74.7 | Minus |
2R | 25286936 | 2R | 7656260..7656316 | 388..332 | 180 | 87.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:19:37 has no hits.
BO15177.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:09 Download gff for
BO15177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-PA | 251..978 | 16..744 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:45 Download gff for
BO15177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-PA | 251..978 | 16..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:51:13 Download gff for
BO15177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 306..1041 | 10..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:03 Download gff for
BO15177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 306..1041 | 10..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:03 Download gff for
BO15177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7662336..7662429 | 650..744 | 98 | -> | Minus |
2R | 7662499..7662915 | 233..649 | 100 | -> | Minus |
2R | 7662971..7663195 | 10..232 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:51:13 Download gff for
BO15177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3549841..3549934 | 650..744 | 98 | -> | Minus |
arm_2R | 3550004..3550420 | 233..649 | 100 | -> | Minus |
arm_2R | 3550476..3550700 | 10..232 | 98 | | Minus |
BO15177.5prime Sequence
858 bp (787 high quality bases) assembled on 2006-06-16
> BO15177.5prime
GAAGTTATCAGTCGACATGAGTGCACCCACGGATTACCTGTTCTGCCCGC
TGGCATATGGGTCAGCTCTTTCGGCCATCGGAATCTATCTGCTCCGACAA
TATATGCAGGGAGGTCAGTTCACCACGAAAACGAATGAGACCGGCAGAGT
GGCGATTGTGACCGGCTGCAACCAGGGGATTGGCAAGGAGACCGTTCTGG
AGCTGGCCCGCAGGGGAGCTACCGTGTACATGGCTTGTCGGGACATGAAG
AAGTGCGAGAATGCCCGTCGGGAGATCATCAAAGCGACCAACAACCAGAA
CATCTTCGCACGCCAATTGGACCTGTGCTCCATGAAGTCCATTAGGAACT
TCGCTGCTGGCTTTAAGCGGGAGCAAAACAAGCTTCACATTCTTATCAAC
AACGCCGGCATTATGGACTGCCCCAAAATGCTGACGGAGGACGGATTTGA
AATGCAAATCGGAGTGAATCACATGGGCCACTTCCTCCTCACACTTCTGC
TTCTCGATGTCCTGAAGAGTTCCGCGCCCAGTCGCGTTGTGGTCCTGTCC
AGCATTGCTCACCGCTTCGGAAGGATTAAGCGTGACGACCTGAACAGCGA
AAAGTCCTATGACAGAAAGATGGCCTACTGTCAGAGCAAATTGGCCAACG
TCCTCTTCACCAGGGAGTTGGCGAAACGCCTGAGCGGAACAGGGGTCACG
GTAAATGCCCTACATCCCGGAGTAGTAAACACGGAACTGTTCCGCAATAC
ACCCTTTTTGGGTTCGTGGTTTGGAAAATTGCTCATAGCCCCTATTATAT
GGATATTCATAAAGACGGCTAGGAATGGCGCACAGACGACCCTGTACGCT
GCCCTGGA
BO15177.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-PA | 978 | CG2070-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-RB | 1381 | CG2070-RB | 183..1024 | 17..858 | 4210 | 100 | Plus |
CG2070-RA | 1105 | CG2070-RA | 56..897 | 17..858 | 4210 | 100 | Plus |
CG2065-RB | 1233 | CG2065-RB | 181..822 | 99..740 | 630 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7662498..7662915 | 360..777 | 2090 | 100 | Plus |
2R | 25286936 | 2R | 7662165..7662429 | 96..360 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 7662971..7663051 | 778..858 | 405 | 100 | Plus |
2R | 25286936 | 2R | 7662037..7662116 | 17..96 | 400 | 100 | Plus |
2R | 25286936 | 2R | 7664035..7664296 | 99..360 | 350 | 75.6 | Plus |
2R | 25286936 | 2R | 7664643..7664797 | 586..740 | 235 | 76.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:32:03 has no hits.
BO15177.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:10 Download gff for
BO15177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:46 Download gff for
BO15177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:10:27 Download gff for
BO15177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 56..896 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:48 Download gff for
BO15177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 56..896 | 17..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:48 Download gff for
BO15177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7662037..7662116 | 17..96 | 100 | -> | Plus |
2R | 7662166..7662429 | 97..360 | 100 | -> | Plus |
2R | 7662499..7662915 | 361..777 | 100 | -> | Plus |
2R | 7662971..7663050 | 778..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:10:27 Download gff for
BO15177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3549542..3549621 | 17..96 | 100 | -> | Plus |
arm_2R | 3549671..3549934 | 97..360 | 100 | -> | Plus |
arm_2R | 3550004..3550420 | 361..777 | 100 | -> | Plus |
arm_2R | 3550476..3550555 | 778..857 | 100 | | Plus |
BO15177.complete Sequence
1009 bp (1009 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633376
> BO15177.complete
GAAGTTATCAGTCGACATGAGTGCACCCACGGATTACCTGTTCTGCCCGC
TGGCATATGGGTCAGCTCTTTCGGCCATCGGAATCTATCTGCTCCGACAA
TATATGCAGGGAGGTCAGTTCACCACGAAAACGAATGAGACCGGCAGAGT
GGCGATTGTGACCGGCTGCAACCAGGGGATTGGCAAGGAGACCGTTCTGG
AGCTGGCCCGCAGGGGAGCTACCGTGTACATGGCTTGTCGGGACATGAAG
AAGTGCGAGAATGCCCGTCGGGAGATCATCAAAGCGACCAACAACCAGAA
CATCTTCGCACGCCAATTGGACCTGTGCTCCATGAAGTCCATTAGGAACT
TCGCTGCTGGCTTTAAGCGGGAGCAAAACAAGCTTCACATTCTTATCAAC
AACGCCGGCATTATGGACTGCCCCAAAATGCTGACGGAGGACGGATTTGA
AATGCAAATCGGAGTGAATCACATGGGCCACTTCCTCCTCACACTTCTGC
TTCTCGATGTCCTGAAGAGTTCCGCGCCCAGTCGCGTTGTGGTCCTGTCC
AGCATTGCTCACCGCTTCGGAAGGATTAAGCGTGACGACCTGAACAGCGA
AAAGTCCTATGACAGAAAGATGGCCTACTGTCAGAGCAAATTGGCCAACG
TCCTCTTCACCAGGGAGTTGGCGAAACGCCTGAGCGGAACAGGGGTCACG
GTAAATGCCCTACATCCCGGAGTAGTAAACACGGAACTGTTCCGCAATAC
ACCCTTTTTGGGTTCGTGGTTTGGAAAATTGCTCATAGCCCCTATTATAT
GGATATTCATAAAGACGGCTAGGAATGGCGCACAGACGACCCTGTACGCT
GCCCTGGATCCCAGTTTGGAAAAAGTATCTGGAAGATACTTCAGCGATTG
CAAGCAGAAGCACGTGGGCTCGGCCGCCCAGTATGACGATGATGCCCAAT
TCCTATGGGCGGAAAGTGAAAAGTGGACGGGAATTAATATAGCAAGCTTT
CTAGACCAT
BO15177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-RB | 978 | CG2070-PB | 1..975 | 17..991 | 4875 | 100 | Plus |
CG2070-RA | 978 | CG2070-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
CG2065-RB | 903 | CG2065-PB | 1..637 | 104..740 | 620 | 73.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-RB | 1381 | CG2070-RB | 183..1157 | 17..991 | 4875 | 100 | Plus |
CG2070-RA | 1105 | CG2070-RA | 56..1030 | 17..991 | 4875 | 100 | Plus |
CG2065-RB | 1233 | CG2065-RB | 181..822 | 99..740 | 630 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7662498..7662915 | 360..777 | 2090 | 100 | Plus |
2R | 25286936 | 2R | 7662165..7662429 | 96..360 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 7662971..7663184 | 778..991 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 7662037..7662116 | 17..96 | 400 | 100 | Plus |
2R | 25286936 | 2R | 7664035..7664296 | 99..360 | 350 | 75.6 | Plus |
2R | 25286936 | 2R | 7664643..7664797 | 586..740 | 235 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:00:25 has no hits.
BO15177.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:45 Download gff for
BO15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 1..978 | 17..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:57 Download gff for
BO15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 26..1011 | 17..1000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:07 Download gff for
BO15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 56..1030 | 17..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:46 Download gff for
BO15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 26..1011 | 17..1000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:15 Download gff for
BO15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 56..1030 | 17..993 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:15 Download gff for
BO15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7662971..7663184 | 778..993 | 99 | | Plus |
2R | 7662037..7662116 | 17..96 | 100 | -> | Plus |
2R | 7662166..7662429 | 97..360 | 100 | -> | Plus |
2R | 7662499..7662915 | 361..777 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:07 Download gff for
BO15177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3549542..3549621 | 17..96 | 100 | -> | Plus |
arm_2R | 3549671..3549934 | 97..360 | 100 | -> | Plus |
arm_2R | 3550004..3550420 | 361..777 | 100 | -> | Plus |
arm_2R | 3550476..3550689 | 778..993 | 99 | | Plus |
BO15177.pep Sequence
Translation from 16 to 1009
> BO15177.pep
MSAPTDYLFCPLAYGSALSAIGIYLLRQYMQGGQFTTKTNETGRVAIVTG
CNQGIGKETVLELARRGATVYMACRDMKKCENARREIIKATNNQNIFARQ
LDLCSMKSIRNFAAGFKREQNKLHILINNAGIMDCPKMLTEDGFEMQIGV
NHMGHFLLTLLLLDVLKSSAPSRVVVLSSIAHRFGRIKRDDLNSEKSYDR
KMAYCQSKLANVLFTRELAKRLSGTGVTVNALHPGVVNTELFRNTPFLGS
WFGKLLIAPIIWIFIKTARNGAQTTLYAALDPSLEKVSGRYFSDCKQKHV
GSAAQYDDDAQFLWAESEKWTGINIASFLDH
BO15177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-PB | 325 | CG2070-PB | 1..325 | 1..325 | 1686 | 100 | Plus |
CG2070-PA | 325 | CG2070-PA | 1..325 | 1..325 | 1686 | 100 | Plus |
CG2064-PA | 330 | CG2064-PA | 6..324 | 6..324 | 1106 | 66.5 | Plus |
CG2065-PB | 300 | CG2065-PB | 1..295 | 30..324 | 1105 | 71.2 | Plus |
CG2065-PA | 300 | CG2065-PA | 1..295 | 30..324 | 1105 | 71.2 | Plus |