Clone Sequence Records
BO15181.3prime Sequence
452 bp (452 high quality bases) assembled on 2006-06-16
> BO15181.3prime
ATGGTCTAGAAAGCTTGCGAAGCACTCATCGATGGACGGCAACCATCCGC
TGCAGTAATGCCAGACGGCCCAGGCGGACCATCCCTGCTGGCTGAGGACC
TTCTGGGCGCAACGGACAGAGTTGGTGATGTCGTCGGTCAAGAGGGCATT
GCAGCTCAAGCCGCACTCGTTGTAGGAGAAGCGTCCGTCGGCCTGGCACC
AGTACAGATCGTTGATCTGGAAGATTCCGTAGTCGTTGGAGCCATCGGAG
TTGGCAGGTCCCACCACCCAGGTGCGGTAGTCACTCTCGTGCTGGGCAAT
GCAGGTCCACTTGTCCAGCTGGTCGCGGGGAACTCCCAAGTCGGCCATCT
CGCGGGCCAGCGAGCAGCGGTCGAGGGTGCGACCTGCCAGGGCAGGAGCG
GCAATGGCCAGGAGCACCAGAGCAAAGAAAGCCTTCATGTCGACTGATAA
CT
BO15181.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1165-PA | 423 | LysS-RA | 1..420 | 438..19 | 2100 | 100 | Minus |
CG1179-PA | 423 | LysB-RA | 256..420 | 183..19 | 575 | 93.9 | Minus |
CG1180-PA | 423 | LysE-RA | 256..412 | 183..27 | 535 | 93.6 | Minus |
CG9118-PA | 423 | LysD-RA | 256..420 | 183..19 | 500 | 92.1 | Minus |
CG9111-PA | 390 | LysC-RA | 274..390 | 19..135 | 385 | 93.1 | Plus |
CG9116-PA | 426 | LysP-RA | 249..320 | 193..122 | 310 | 97.2 | Minus |
CG9111-PA | 390 | LysC-RA | 52..150 | 384..286 | 195 | 87.8 | Minus |
CG9116-PA | 426 | LysP-RA | 106..156 | 333..283 | 180 | 94.1 | Minus |
CG9111-PA | 390 | LysC-RA | 193..227 | 243..209 | 175 | 100 | Minus |
CG1179-PA | 423 | LysB-RA | 193..227 | 243..209 | 175 | 100 | Minus |
CG9118-PA | 423 | LysD-RA | 193..227 | 243..209 | 175 | 100 | Minus |
CG1180-PA | 423 | LysE-RA | 193..225 | 243..211 | 165 | 100 | Minus |
CG9120-PA | 429 | LysX-RA | 159..246 | 280..193 | 165 | 87.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysS-RA | 492 | CG1165-RA | 24..445 | 440..19 | 2110 | 100 | Minus |
LysB-RB | 611 | CG1179-RB | 22..443 | 440..19 | 1025 | 83.9 | Minus |
LysB-RA | 486 | CG1179-RA | 22..443 | 440..19 | 1025 | 83.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1227770..1228191 | 440..19 | 2110 | 100 | Minus |
3L | 28110227 | 3L | 1207392..1207813 | 440..19 | 975 | 83.1 | Minus |
3L | 28110227 | 3L | 1212952..1213371 | 438..19 | 950 | 82.7 | Minus |
3L | 28110227 | 3L | 1210758..1211126 | 19..384 | 895 | 83.5 | Plus |
3L | 28110227 | 3L | 1218286..1218595 | 45..351 | 735 | 83.2 | Plus |
3L | 28110227 | 3L | 1194874..1195241 | 20..384 | 560 | 77.4 | Plus |
3L | 28110227 | 3L | 1210536..1210724 | 384..196 | 495 | 84.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:21:35 has no hits.
BO15181.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:13 Download gff for
BO15181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-PA | 1..423 | 15..438 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:50 Download gff for
BO15181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1165-PA | 1..423 | 15..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:51:35 Download gff for
BO15181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 21..455 | 8..443 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:03 Download gff for
BO15181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 21..455 | 8..443 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:03 Download gff for
BO15181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1227767..1228201 | 8..443 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:51:35 Download gff for
BO15181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1227767..1228201 | 8..443 | 98 | | Minus |
BO15181.5prime Sequence
452 bp (452 high quality bases) assembled on 2006-06-16
> BO15181.5prime
GAAGTTATCAGTCGACATGAAGGCTTTCTTTGCTCTGGTGCTCCTGGCCA
TTGCCGCTCCTGCCCTGGCAGGTCGCACCCTCGACCGCTGCTCGCTGGCC
CGCGAGATGGCCGACTTGGGAGTTCCCCGCGACCAGCTGGACAAGTGGAC
CTGCATTGCCCAGCACGAGAGTGACTACCGCACCTGGGTGGTGGGACCTG
CCAACTCCGATGGCTCCAACGACTACGGAATCTTCCAGATCAACGATCTG
TACTGGTGCCAGGCCGACGGACGCTTCTCCTACAACGAGTGCGGCTTGAG
CTGCAATGCCCTCTTGACCGACGACATCACCAACTCTGTCCGTTGCGCCC
AGAAGGTCCTCAGCCAGCAGGGATGGTCCGCCTGGGCCGTCTGGCATTAC
TGCAGCGGATGGTTGCCGTCCATCGATGAGTGCTTCGCAAGCTTTCTAGA
CC
BO15181.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1165-PA | 423 | LysS-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
CG1179-PA | 423 | LysB-RA | 256..420 | 272..436 | 575 | 93.9 | Plus |
CG1180-PA | 423 | LysE-RA | 256..412 | 272..428 | 535 | 93.6 | Plus |
CG9118-PA | 423 | LysD-RA | 256..420 | 272..436 | 500 | 92.1 | Plus |
CG9111-PA | 390 | LysC-RA | 274..390 | 436..320 | 385 | 93.1 | Minus |
CG9116-PA | 426 | LysP-RA | 249..320 | 262..333 | 310 | 97.2 | Plus |
CG9111-PA | 390 | LysC-RA | 52..150 | 71..169 | 195 | 87.8 | Plus |
CG9116-PA | 426 | LysP-RA | 106..156 | 122..172 | 180 | 94.1 | Plus |
CG9111-PA | 390 | LysC-RA | 193..227 | 212..246 | 175 | 100 | Plus |
CG1179-PA | 423 | LysB-RA | 193..227 | 212..246 | 175 | 100 | Plus |
CG9118-PA | 423 | LysD-RA | 193..227 | 212..246 | 175 | 100 | Plus |
CG1180-PA | 423 | LysE-RA | 193..225 | 212..244 | 165 | 100 | Plus |
CG9120-PA | 429 | LysX-RA | 159..246 | 175..262 | 165 | 87.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysS-RA | 492 | CG1165-RA | 24..445 | 15..436 | 2110 | 100 | Plus |
LysB-RB | 611 | CG1179-RB | 22..443 | 15..436 | 1025 | 83.9 | Plus |
LysB-RA | 486 | CG1179-RA | 22..443 | 15..436 | 1025 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1227770..1228191 | 15..436 | 2110 | 100 | Plus |
3L | 28110227 | 3L | 1207392..1207813 | 15..436 | 975 | 83.1 | Plus |
3L | 28110227 | 3L | 1212952..1213371 | 17..436 | 950 | 82.7 | Plus |
3L | 28110227 | 3L | 1210758..1211126 | 436..71 | 895 | 83.5 | Minus |
3L | 28110227 | 3L | 1218286..1218595 | 410..104 | 735 | 83.2 | Minus |
3L | 28110227 | 3L | 1194874..1195241 | 435..71 | 560 | 77.4 | Minus |
3L | 28110227 | 3L | 1210536..1210724 | 71..259 | 495 | 84.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:50:12 has no hits.
BO15181.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:14 Download gff for
BO15181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-PA | 1..423 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:52 Download gff for
BO15181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1165-PA | 1..423 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:51:08 Download gff for
BO15181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 21..455 | 12..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:10 Download gff for
BO15181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 21..455 | 12..447 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:10 Download gff for
BO15181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1227767..1228201 | 12..447 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:51:08 Download gff for
BO15181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1227767..1228201 | 12..447 | 98 | | Plus |
BO15181.complete Sequence
454 bp (454 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633377
> BO15181.complete
GAAGTTATCAGTCGACATGAAGGCTTTCTTTGCTCTGGTGCTCCTGGCCA
TTGCCGCTCCTGCCCTGGCAGGTCGCACCCTCGACCGCTGCTCGCTGGCC
CGCGAGATGGCCGACTTGGGAGTTCCCCGCGACCAGCTGGACAAGTGGAC
CTGCATTGCCCAGCACGAGAGTGACTACCGCACCTGGGTGGTGGGACCTG
CCAACTCCGATGGCTCCAACGACTACGGAATCTTCCAGATCAACGATCTG
TACTGGTGCCAGGCCGACGGACGCTTCTCCTACAACGAGTGCGGCTTGAG
CTGCAATGCCCTCTTGACCGACGACATCACCAACTCTGTCCGTTGCGCCC
AGAAGGTCCTCAGCCAGCAGGGATGGTCCGCCTGGGCCGTCTGGCATTAC
TGCAGCGGATGGTTGCCGTCCATCGATGAGTGCTTCGCAAGCTTTCTAGA
CCAT
BO15181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysS-RA | 423 | CG1165-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
LysB-RB | 423 | CG1179-PB | 1..420 | 17..436 | 965 | 83 | Plus |
LysB-RA | 423 | CG1179-PA | 1..420 | 17..436 | 965 | 83 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysS-RA | 492 | CG1165-RA | 24..445 | 15..436 | 2110 | 100 | Plus |
LysB-RB | 611 | CG1179-RB | 22..443 | 15..436 | 975 | 83.1 | Plus |
LysB-RA | 486 | CG1179-RA | 22..443 | 15..436 | 975 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1227770..1228191 | 15..436 | 2110 | 100 | Plus |
3L | 28110227 | 3L | 1207392..1207813 | 15..436 | 975 | 83.1 | Plus |
3L | 28110227 | 3L | 1212952..1213371 | 17..436 | 950 | 82.7 | Plus |
3L | 28110227 | 3L | 1210758..1211126 | 436..71 | 895 | 83.5 | Minus |
3L | 28110227 | 3L | 1218286..1218595 | 410..104 | 735 | 83.2 | Minus |
3L | 28110227 | 3L | 1194874..1195241 | 435..71 | 560 | 77.4 | Minus |
3L | 28110227 | 3L | 1210536..1210724 | 71..259 | 495 | 84.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:14:41 has no hits.
BO15181.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:46 Download gff for
BO15181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 1..423 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:42 Download gff for
BO15181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 1..434 | 13..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:59 Download gff for
BO15181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 26..445 | 17..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:47 Download gff for
BO15181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 1..434 | 13..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:12 Download gff for
BO15181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 26..445 | 17..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:12 Download gff for
BO15181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1227772..1228191 | 17..438 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:59 Download gff for
BO15181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1227772..1228191 | 17..438 | 99 | | Plus |
BO15181.pep Sequence
Translation from 16 to 454
> BO15181.pep
MKAFFALVLLAIAAPALAGRTLDRCSLAREMADLGVPRDQLDKWTCIAQH
ESDYRTWVVGPANSDGSNDYGIFQINDLYWCQADGRFSYNECGLSCNALL
TDDITNSVRCAQKVLSQQGWSAWAVWHYCSGWLPSIDECFASFLDH
BO15181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysS-PA | 140 | CG1165-PA | 1..140 | 1..140 | 776 | 100 | Plus |
LysB-PB | 140 | CG1179-PB | 1..140 | 1..140 | 630 | 81.6 | Plus |
LysB-PA | 140 | CG1179-PA | 1..140 | 1..140 | 630 | 81.6 | Plus |
LysC-PA | 140 | CG9111-PA | 1..140 | 1..140 | 629 | 81.6 | Plus |
LysD-PA | 140 | CG9118-PA | 1..140 | 1..140 | 623 | 80.9 | Plus |