Clone BO15181 Report

Search the DGRC for BO15181

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:151
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptLysS-RA
Protein status:BO15181.pep: validated full length
Sequenced Size:454

Clone Sequence Records

BO15181.3prime Sequence

452 bp (452 high quality bases) assembled on 2006-06-16

> BO15181.3prime
ATGGTCTAGAAAGCTTGCGAAGCACTCATCGATGGACGGCAACCATCCGC
TGCAGTAATGCCAGACGGCCCAGGCGGACCATCCCTGCTGGCTGAGGACC
TTCTGGGCGCAACGGACAGAGTTGGTGATGTCGTCGGTCAAGAGGGCATT
GCAGCTCAAGCCGCACTCGTTGTAGGAGAAGCGTCCGTCGGCCTGGCACC
AGTACAGATCGTTGATCTGGAAGATTCCGTAGTCGTTGGAGCCATCGGAG
TTGGCAGGTCCCACCACCCAGGTGCGGTAGTCACTCTCGTGCTGGGCAAT
GCAGGTCCACTTGTCCAGCTGGTCGCGGGGAACTCCCAAGTCGGCCATCT
CGCGGGCCAGCGAGCAGCGGTCGAGGGTGCGACCTGCCAGGGCAGGAGCG
GCAATGGCCAGGAGCACCAGAGCAAAGAAAGCCTTCATGTCGACTGATAA
CT

BO15181.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1165-PA 423 LysS-RA 1..420 438..19 2100 100 Minus
CG1179-PA 423 LysB-RA 256..420 183..19 575 93.9 Minus
CG1180-PA 423 LysE-RA 256..412 183..27 535 93.6 Minus
CG9118-PA 423 LysD-RA 256..420 183..19 500 92.1 Minus
CG9111-PA 390 LysC-RA 274..390 19..135 385 93.1 Plus
CG9116-PA 426 LysP-RA 249..320 193..122 310 97.2 Minus
CG9111-PA 390 LysC-RA 52..150 384..286 195 87.8 Minus
CG9116-PA 426 LysP-RA 106..156 333..283 180 94.1 Minus
CG9111-PA 390 LysC-RA 193..227 243..209 175 100 Minus
CG1179-PA 423 LysB-RA 193..227 243..209 175 100 Minus
CG9118-PA 423 LysD-RA 193..227 243..209 175 100 Minus
CG1180-PA 423 LysE-RA 193..225 243..211 165 100 Minus
CG9120-PA 429 LysX-RA 159..246 280..193 165 87.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
LysS-RA 492 CG1165-RA 24..445 440..19 2110 100 Minus
LysB-RB 611 CG1179-RB 22..443 440..19 1025 83.9 Minus
LysB-RA 486 CG1179-RA 22..443 440..19 1025 83.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1227770..1228191 440..19 2110 100 Minus
3L 28110227 3L 1207392..1207813 440..19 975 83.1 Minus
3L 28110227 3L 1212952..1213371 438..19 950 82.7 Minus
3L 28110227 3L 1210758..1211126 19..384 895 83.5 Plus
3L 28110227 3L 1218286..1218595 45..351 735 83.2 Plus
3L 28110227 3L 1194874..1195241 20..384 560 77.4 Plus
3L 28110227 3L 1210536..1210724 384..196 495 84.1 Minus
Blast to na_te.dros performed on 2015-02-12 18:21:35 has no hits.

BO15181.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:13 Download gff for BO15181.3prime
Subject Subject Range Query Range Percent Splice Strand
LysS-PA 1..423 15..438 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:50 Download gff for BO15181.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1165-PA 1..423 15..438 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:51:35 Download gff for BO15181.3prime
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 21..455 8..443 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:03 Download gff for BO15181.3prime
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 21..455 8..443 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:03 Download gff for BO15181.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1227767..1228201 8..443 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:51:35 Download gff for BO15181.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1227767..1228201 8..443 98   Minus

BO15181.5prime Sequence

452 bp (452 high quality bases) assembled on 2006-06-16

> BO15181.5prime
GAAGTTATCAGTCGACATGAAGGCTTTCTTTGCTCTGGTGCTCCTGGCCA
TTGCCGCTCCTGCCCTGGCAGGTCGCACCCTCGACCGCTGCTCGCTGGCC
CGCGAGATGGCCGACTTGGGAGTTCCCCGCGACCAGCTGGACAAGTGGAC
CTGCATTGCCCAGCACGAGAGTGACTACCGCACCTGGGTGGTGGGACCTG
CCAACTCCGATGGCTCCAACGACTACGGAATCTTCCAGATCAACGATCTG
TACTGGTGCCAGGCCGACGGACGCTTCTCCTACAACGAGTGCGGCTTGAG
CTGCAATGCCCTCTTGACCGACGACATCACCAACTCTGTCCGTTGCGCCC
AGAAGGTCCTCAGCCAGCAGGGATGGTCCGCCTGGGCCGTCTGGCATTAC
TGCAGCGGATGGTTGCCGTCCATCGATGAGTGCTTCGCAAGCTTTCTAGA
CC

BO15181.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1165-PA 423 LysS-RA 1..420 17..436 2100 100 Plus
CG1179-PA 423 LysB-RA 256..420 272..436 575 93.9 Plus
CG1180-PA 423 LysE-RA 256..412 272..428 535 93.6 Plus
CG9118-PA 423 LysD-RA 256..420 272..436 500 92.1 Plus
CG9111-PA 390 LysC-RA 274..390 436..320 385 93.1 Minus
CG9116-PA 426 LysP-RA 249..320 262..333 310 97.2 Plus
CG9111-PA 390 LysC-RA 52..150 71..169 195 87.8 Plus
CG9116-PA 426 LysP-RA 106..156 122..172 180 94.1 Plus
CG9111-PA 390 LysC-RA 193..227 212..246 175 100 Plus
CG1179-PA 423 LysB-RA 193..227 212..246 175 100 Plus
CG9118-PA 423 LysD-RA 193..227 212..246 175 100 Plus
CG1180-PA 423 LysE-RA 193..225 212..244 165 100 Plus
CG9120-PA 429 LysX-RA 159..246 175..262 165 87.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
LysS-RA 492 CG1165-RA 24..445 15..436 2110 100 Plus
LysB-RB 611 CG1179-RB 22..443 15..436 1025 83.9 Plus
LysB-RA 486 CG1179-RA 22..443 15..436 1025 83.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1227770..1228191 15..436 2110 100 Plus
3L 28110227 3L 1207392..1207813 15..436 975 83.1 Plus
3L 28110227 3L 1212952..1213371 17..436 950 82.7 Plus
3L 28110227 3L 1210758..1211126 436..71 895 83.5 Minus
3L 28110227 3L 1218286..1218595 410..104 735 83.2 Minus
3L 28110227 3L 1194874..1195241 435..71 560 77.4 Minus
3L 28110227 3L 1210536..1210724 71..259 495 84.1 Plus
Blast to na_te.dros performed on 2015-02-10 21:50:12 has no hits.

BO15181.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:14 Download gff for BO15181.5prime
Subject Subject Range Query Range Percent Splice Strand
LysS-PA 1..423 17..440 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:52 Download gff for BO15181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1165-PA 1..423 17..440 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:51:08 Download gff for BO15181.5prime
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 21..455 12..447 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:10 Download gff for BO15181.5prime
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 21..455 12..447 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:10 Download gff for BO15181.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1227767..1228201 12..447 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:51:08 Download gff for BO15181.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1227767..1228201 12..447 98   Plus

BO15181.complete Sequence

454 bp (454 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633377

> BO15181.complete
GAAGTTATCAGTCGACATGAAGGCTTTCTTTGCTCTGGTGCTCCTGGCCA
TTGCCGCTCCTGCCCTGGCAGGTCGCACCCTCGACCGCTGCTCGCTGGCC
CGCGAGATGGCCGACTTGGGAGTTCCCCGCGACCAGCTGGACAAGTGGAC
CTGCATTGCCCAGCACGAGAGTGACTACCGCACCTGGGTGGTGGGACCTG
CCAACTCCGATGGCTCCAACGACTACGGAATCTTCCAGATCAACGATCTG
TACTGGTGCCAGGCCGACGGACGCTTCTCCTACAACGAGTGCGGCTTGAG
CTGCAATGCCCTCTTGACCGACGACATCACCAACTCTGTCCGTTGCGCCC
AGAAGGTCCTCAGCCAGCAGGGATGGTCCGCCTGGGCCGTCTGGCATTAC
TGCAGCGGATGGTTGCCGTCCATCGATGAGTGCTTCGCAAGCTTTCTAGA
CCAT

BO15181.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
LysS-RA 423 CG1165-PA 1..420 17..436 2100 100 Plus
LysB-RB 423 CG1179-PB 1..420 17..436 965 83 Plus
LysB-RA 423 CG1179-PA 1..420 17..436 965 83 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
LysS-RA 492 CG1165-RA 24..445 15..436 2110 100 Plus
LysB-RB 611 CG1179-RB 22..443 15..436 975 83.1 Plus
LysB-RA 486 CG1179-RA 22..443 15..436 975 83.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1227770..1228191 15..436 2110 100 Plus
3L 28110227 3L 1207392..1207813 15..436 975 83.1 Plus
3L 28110227 3L 1212952..1213371 17..436 950 82.7 Plus
3L 28110227 3L 1210758..1211126 436..71 895 83.5 Minus
3L 28110227 3L 1218286..1218595 410..104 735 83.2 Minus
3L 28110227 3L 1194874..1195241 435..71 560 77.4 Minus
3L 28110227 3L 1210536..1210724 71..259 495 84.1 Plus
Blast to na_te.dros performed on 2014-11-27 16:14:41 has no hits.

BO15181.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:46 Download gff for BO15181.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 1..423 17..440 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:42 Download gff for BO15181.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 1..434 13..447 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:59 Download gff for BO15181.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 26..445 17..438 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:47 Download gff for BO15181.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 1..434 13..447 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:12 Download gff for BO15181.complete
Subject Subject Range Query Range Percent Splice Strand
LysS-RA 26..445 17..438 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:12 Download gff for BO15181.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1227772..1228191 17..438 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:59 Download gff for BO15181.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1227772..1228191 17..438 99   Plus

BO15181.pep Sequence

Translation from 16 to 454

> BO15181.pep
MKAFFALVLLAIAAPALAGRTLDRCSLAREMADLGVPRDQLDKWTCIAQH
ESDYRTWVVGPANSDGSNDYGIFQINDLYWCQADGRFSYNECGLSCNALL
TDDITNSVRCAQKVLSQQGWSAWAVWHYCSGWLPSIDECFASFLDH

BO15181.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
LysS-PA 140 CG1165-PA 1..140 1..140 776 100 Plus
LysB-PB 140 CG1179-PB 1..140 1..140 630 81.6 Plus
LysB-PA 140 CG1179-PA 1..140 1..140 630 81.6 Plus
LysC-PA 140 CG9111-PA 1..140 1..140 629 81.6 Plus
LysD-PA 140 CG9118-PA 1..140 1..140 623 80.9 Plus