Clone BO15183 Report

Search the DGRC for BO15183

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:151
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptTotB-RA
Protein status:BO15183.pep: validated full length
Sequenced Size:448

Clone Sequence Records

BO15183.3prime Sequence

446 bp (446 high quality bases) assembled on 2006-06-16

> BO15183.3prime
ATGGTCTAGAAAGCTTGCATGGTTTCGTTCTGTGTTAGCTGGAAACCAGC
TAGTTAATATGCTTGCAAGACTTGCACCGAGTTCGGTAAAGAATCCAGTT
GCCACGCTCTTTGCCGCCGGAGACAGAATCTTCTTAAAGATCCTTCTAGC
ACCACCTTGACTGGGTACTCCATCGACCATGATTTCTCCCGTATATCCAC
TTATGAATCTGTCCATTCTCGCCCTTTCATCTGGTCTTAAGCTAGGAGCC
ATGCGATTGTATATGGTAAGTAGTTCCTGGATTCTTTTGATTTTGGTATT
GTCGTCCCAGGAGGTTCGCATAATTTCAGCAACCCTACGACTGTCACGTT
GACGTTCTTGATTGGAATAGGCCGAGCATAGAGTTCCAATCAGTAGCAGT
GCGAAACAGATCAAAGACGTTTTAAAATTCATGTCGACTGATAACT

BO15183.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5609-PA 417 TotB-RA 1..414 432..19 2070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
TotB-RA 526 CG5609-RA 41..454 432..19 2070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20874060..20874450 409..19 1955 100 Minus
Blast to na_te.dros performed 2015-02-08 12:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 5117..5186 324..255 143 67.1 Minus

BO15183.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:15 Download gff for BO15183.3prime
Subject Subject Range Query Range Percent Splice Strand
TotB-PA 1..417 16..432 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:54 Download gff for BO15183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5609-PA 1..417 16..432 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:47:54 Download gff for BO15183.3prime
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 41..458 15..432 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:51:32 Download gff for BO15183.3prime
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 41..458 15..432 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:51:32 Download gff for BO15183.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20874060..20874454 15..409 99   Minus
3R 20873978..20874000 410..432 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:47:54 Download gff for BO15183.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16699700..16699722 410..432 100 -> Minus
arm_3R 16699782..16700176 15..409 99   Minus

BO15183.5prime Sequence

446 bp (446 high quality bases) assembled on 2006-06-16

> BO15183.5prime
GAAGTTATCAGTCGACATGAATTTTAAAACGTCTTTGATCTGTTTCGCAC
TGCTACTGATTGGAACTCTATGCTCGGCCTATTCCAATCAAGAACGTCAA
CGTGACAGTCGTAGGGTTGCTGAAATTATGCGAACCTCCTGGGACGACAA
TACCAAAATCAAAAGAATCCAGGAACTACTTACCATATACAATCGCATGG
CTCCTAGCTTAAGACCAGATGAAAGGGCGAGAATGGACAGATTCATAAGT
GGATATACGGGAGAAATCATGGTCGATGGAGTACCCAGTCAAGGTGGTGC
TAGAAGGATCTTTAAGAAGATTCTGTCTCCGGCGGCAAAGAGCGTGGCAA
CTGGATTCTTTACCGAACTCGGTGCAAGTCTTGCAAGCATATTAACTAGC
TGGTTTCCAGCTAACACAGAACGAAACCATGCAAGCTTTCTAGACC

BO15183.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5609-PA 417 TotB-RA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
TotB-RA 526 CG5609-RA 41..454 17..430 2070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20874060..20874450 40..430 1955 100 Plus
Blast to na_te.dros performed 2015-02-12 00:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 5117..5186 125..194 143 67.1 Plus

BO15183.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:16 Download gff for BO15183.5prime
Subject Subject Range Query Range Percent Splice Strand
TotB-PA 1..417 17..433 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:55 Download gff for BO15183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5609-PA 1..417 17..433 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:33:39 Download gff for BO15183.5prime
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 41..458 17..434 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:15:08 Download gff for BO15183.5prime
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 41..458 17..434 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:15:08 Download gff for BO15183.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20873978..20874000 17..39 100 -> Plus
3R 20874060..20874454 40..434 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:33:39 Download gff for BO15183.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16699700..16699722 17..39 100 -> Plus
arm_3R 16699782..16700176 40..434 99   Plus

BO15183.complete Sequence

448 bp (448 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633378

> BO15183.complete
GAAGTTATCAGTCGACATGAATTTTAAAACGTCTTTGATCTGTTTCGCAC
TGCTACTGATTGGAACTCTATGCTCGGCCTATTCCAATCAAGAACGTCAA
CGTGACAGTCGTAGGGTTGCTGAAATTATGCGAACCTCCTGGGACGACAA
TACCAAAATCAAAAGAATCCAGGAACTACTTACCATATACAATCGCATGG
CTCCTAGCTTAAGACCAGATGAAAGGGCGAGAATGGACAGATTCATAAGT
GGATATACGGGAGAAATCATGGTCGATGGAGTACCCAGTCAAGGTGGTGC
TAGAAGGATCTTTAAGAAGATTCTGTCTCCGGCGGCAAAGAGCGTGGCAA
CTGGATTCTTTACCGAACTCGGTGCAAGTCTTGCAAGCATATTAACTAGC
TGGTTTCCAGCTAACACAGAACGAAACCATGCAAGCTTTCTAGACCAT

BO15183.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
TotB-RA 417 CG5609-PA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
TotB-RA 526 CG5609-RA 41..454 17..430 2070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20874060..20874450 40..430 1955 100 Plus
Blast to na_te.dros performed 2014-11-26 15:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 5117..5186 125..194 143 67.1 Plus

BO15183.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:47 Download gff for BO15183.complete
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 1..417 17..433 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:59 Download gff for BO15183.complete
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 29..446 17..434 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:52 Download gff for BO15183.complete
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 41..454 17..432 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:48 Download gff for BO15183.complete
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 29..446 17..434 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:41 Download gff for BO15183.complete
Subject Subject Range Query Range Percent Splice Strand
TotB-RA 41..454 17..432 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:41 Download gff for BO15183.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20873978..20874000 17..39 100 -> Plus
3R 20874060..20874450 40..432 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:52 Download gff for BO15183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16699700..16699722 17..39 100 -> Plus
arm_3R 16699782..16700172 40..432 99   Plus

BO15183.pep Sequence

Translation from 16 to 448

> BO15183.pep
MNFKTSLICFALLLIGTLCSAYSNQERQRDSRRVAEIMRTSWDDNTKIKR
IQELLTIYNRMAPSLRPDERARMDRFISGYTGEIMVDGVPSQGGARRIFK
KILSPAAKSVATGFFTELGASLASILTSWFPANTERNHASFLDH

BO15183.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
TotB-PA 138 CG5609-PA 1..138 1..138 704 100 Plus
TotA-PA 129 CG31509-PA 1..128 1..127 348 52.3 Plus
TotC-PA 129 CG31508-PA 1..128 1..127 336 53.1 Plus