Clone Sequence Records
BO15183.3prime Sequence
446 bp (446 high quality bases) assembled on 2006-06-16
> BO15183.3prime
ATGGTCTAGAAAGCTTGCATGGTTTCGTTCTGTGTTAGCTGGAAACCAGC
TAGTTAATATGCTTGCAAGACTTGCACCGAGTTCGGTAAAGAATCCAGTT
GCCACGCTCTTTGCCGCCGGAGACAGAATCTTCTTAAAGATCCTTCTAGC
ACCACCTTGACTGGGTACTCCATCGACCATGATTTCTCCCGTATATCCAC
TTATGAATCTGTCCATTCTCGCCCTTTCATCTGGTCTTAAGCTAGGAGCC
ATGCGATTGTATATGGTAAGTAGTTCCTGGATTCTTTTGATTTTGGTATT
GTCGTCCCAGGAGGTTCGCATAATTTCAGCAACCCTACGACTGTCACGTT
GACGTTCTTGATTGGAATAGGCCGAGCATAGAGTTCCAATCAGTAGCAGT
GCGAAACAGATCAAAGACGTTTTAAAATTCATGTCGACTGATAACT
BO15183.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5609-PA | 417 | TotB-RA | 1..414 | 432..19 | 2070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotB-RA | 526 | CG5609-RA | 41..454 | 432..19 | 2070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20874060..20874450 | 409..19 | 1955 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 12:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 5117..5186 | 324..255 | 143 | 67.1 | Minus |
BO15183.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:15 Download gff for
BO15183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-PA | 1..417 | 16..432 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:54 Download gff for
BO15183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5609-PA | 1..417 | 16..432 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:47:54 Download gff for
BO15183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 41..458 | 15..432 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:51:32 Download gff for
BO15183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 41..458 | 15..432 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:51:32 Download gff for
BO15183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20874060..20874454 | 15..409 | 99 | | Minus |
3R | 20873978..20874000 | 410..432 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:47:54 Download gff for
BO15183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16699700..16699722 | 410..432 | 100 | -> | Minus |
arm_3R | 16699782..16700176 | 15..409 | 99 | | Minus |
BO15183.5prime Sequence
446 bp (446 high quality bases) assembled on 2006-06-16
> BO15183.5prime
GAAGTTATCAGTCGACATGAATTTTAAAACGTCTTTGATCTGTTTCGCAC
TGCTACTGATTGGAACTCTATGCTCGGCCTATTCCAATCAAGAACGTCAA
CGTGACAGTCGTAGGGTTGCTGAAATTATGCGAACCTCCTGGGACGACAA
TACCAAAATCAAAAGAATCCAGGAACTACTTACCATATACAATCGCATGG
CTCCTAGCTTAAGACCAGATGAAAGGGCGAGAATGGACAGATTCATAAGT
GGATATACGGGAGAAATCATGGTCGATGGAGTACCCAGTCAAGGTGGTGC
TAGAAGGATCTTTAAGAAGATTCTGTCTCCGGCGGCAAAGAGCGTGGCAA
CTGGATTCTTTACCGAACTCGGTGCAAGTCTTGCAAGCATATTAACTAGC
TGGTTTCCAGCTAACACAGAACGAAACCATGCAAGCTTTCTAGACC
BO15183.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5609-PA | 417 | TotB-RA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotB-RA | 526 | CG5609-RA | 41..454 | 17..430 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20874060..20874450 | 40..430 | 1955 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 5117..5186 | 125..194 | 143 | 67.1 | Plus |
BO15183.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:16 Download gff for
BO15183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-PA | 1..417 | 17..433 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:44:55 Download gff for
BO15183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5609-PA | 1..417 | 17..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:33:39 Download gff for
BO15183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 41..458 | 17..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:15:08 Download gff for
BO15183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 41..458 | 17..434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:15:08 Download gff for
BO15183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20873978..20874000 | 17..39 | 100 | -> | Plus |
3R | 20874060..20874454 | 40..434 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:33:39 Download gff for
BO15183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16699700..16699722 | 17..39 | 100 | -> | Plus |
arm_3R | 16699782..16700176 | 40..434 | 99 | | Plus |
BO15183.complete Sequence
448 bp (448 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633378
> BO15183.complete
GAAGTTATCAGTCGACATGAATTTTAAAACGTCTTTGATCTGTTTCGCAC
TGCTACTGATTGGAACTCTATGCTCGGCCTATTCCAATCAAGAACGTCAA
CGTGACAGTCGTAGGGTTGCTGAAATTATGCGAACCTCCTGGGACGACAA
TACCAAAATCAAAAGAATCCAGGAACTACTTACCATATACAATCGCATGG
CTCCTAGCTTAAGACCAGATGAAAGGGCGAGAATGGACAGATTCATAAGT
GGATATACGGGAGAAATCATGGTCGATGGAGTACCCAGTCAAGGTGGTGC
TAGAAGGATCTTTAAGAAGATTCTGTCTCCGGCGGCAAAGAGCGTGGCAA
CTGGATTCTTTACCGAACTCGGTGCAAGTCTTGCAAGCATATTAACTAGC
TGGTTTCCAGCTAACACAGAACGAAACCATGCAAGCTTTCTAGACCAT
BO15183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotB-RA | 417 | CG5609-PA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotB-RA | 526 | CG5609-RA | 41..454 | 17..430 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20874060..20874450 | 40..430 | 1955 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 5117..5186 | 125..194 | 143 | 67.1 | Plus |
BO15183.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:47 Download gff for
BO15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 1..417 | 17..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:59 Download gff for
BO15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 29..446 | 17..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:52 Download gff for
BO15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 41..454 | 17..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:48 Download gff for
BO15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 29..446 | 17..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:41 Download gff for
BO15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotB-RA | 41..454 | 17..432 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:41 Download gff for
BO15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20873978..20874000 | 17..39 | 100 | -> | Plus |
3R | 20874060..20874450 | 40..432 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:52 Download gff for
BO15183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16699700..16699722 | 17..39 | 100 | -> | Plus |
arm_3R | 16699782..16700172 | 40..432 | 99 | | Plus |
BO15183.pep Sequence
Translation from 16 to 448
> BO15183.pep
MNFKTSLICFALLLIGTLCSAYSNQERQRDSRRVAEIMRTSWDDNTKIKR
IQELLTIYNRMAPSLRPDERARMDRFISGYTGEIMVDGVPSQGGARRIFK
KILSPAAKSVATGFFTELGASLASILTSWFPANTERNHASFLDH
BO15183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotB-PA | 138 | CG5609-PA | 1..138 | 1..138 | 704 | 100 | Plus |
TotA-PA | 129 | CG31509-PA | 1..128 | 1..127 | 348 | 52.3 | Plus |
TotC-PA | 129 | CG31508-PA | 1..128 | 1..127 | 336 | 53.1 | Plus |