Clone Sequence Records
BO15194.3prime Sequence
775 bp (722 high quality bases) assembled on 2006-06-16
> BO15194.3prime
ATGGTCTAGAAAGCTTGCGTTCTCGAGGAATAAATCCTCGTAGGCGAAGC
GCTTGAAGAGCTGCGAGAGAACGCTCTTCATGATCTCGGCGATGGCCACA
TGAATGGAGGGATGCAGCTCGTTCCACACCTCCGTCCAGTTGTCGTTGAG
GAACTGATTCAGATTGGTGCCCAATGCCTGGTCGCCATTAAAGAGGTTCT
CCAGCCGAATGTTCATCTTTTGTGGCTCCACCAGAACCTTGAGCTTATCC
ACGCTCAGGTAGGTGCGTCCATTGCGCTGCTGTGTGCCCGGCTTGAATTT
CACCGAAAACTTGGGATTGTGCAACACGATCTCGGCATCGCCATCGCCAC
GAATCGGCAGGATCAGGATGCGTCCATCCGCCACGTACTTGCCCTTCAGC
ACGATCTTGGGAAAGGATCCGTACATCTCAAACTTGCTGGTTGCAGGATC
AGCGCCAAAGCCAACGGCTCTGTCGAACTTCACACTGGACAGGCCCTCCA
CATTCACGTCCCTGAAGTTGAGCTTTAGATTCAGGGAGCCAGTGCGTCCG
TCGGAGATGTCGAAGCGCTTGATCAGGAAGGGCTCCACCTGGGGGAATCC
AGCGGACGGATAGCCGGTCCTCGCGTGCTGTCTGATCAGCATGTGCGACA
CGTTGATGATGCAGCTGGTGTCGCCCATGTGGCAGCGCGGCAGTTCGGGA
GGGAAATTCGAGGCACCGCTAACCAAGCAGCAGAAGAGGGCCACGCAGCC
CAGCTGGAGCAGCATCATGTCGACT
BO15194.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-PA | 753 | CG11852-RA | 67..750 | 702..19 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-RA | 1045 | CG11852-RA | 100..849 | 768..19 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25238200..25238446 | 463..217 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 25237837..25238074 | 701..464 | 1190 | 100 | Minus |
3R | 32079331 | 3R | 25238501..25238699 | 217..19 | 995 | 100 | Minus |
3R | 32079331 | 3R | 25237713..25237779 | 768..702 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:46:42 has no hits.
BO15194.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:26 Download gff for
BO15194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-PA | 67..753 | 16..702 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:08 Download gff for
BO15194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-PA | 67..753 | 16..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:01:58 Download gff for
BO15194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 93..854 | 13..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:14:56 Download gff for
BO15194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 93..854 | 13..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:14:56 Download gff for
BO15194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25237706..25237779 | 702..775 | 94 | -> | Minus |
3R | 25237837..25238074 | 464..701 | 100 | -> | Minus |
3R | 25238200..25238445 | 218..463 | 100 | -> | Minus |
3R | 25238501..25238704 | 13..217 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:01:58 Download gff for
BO15194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21063428..21063501 | 702..775 | 94 | -> | Minus |
arm_3R | 21063559..21063796 | 464..701 | 100 | -> | Minus |
arm_3R | 21063922..21064167 | 218..463 | 100 | -> | Minus |
arm_3R | 21064223..21064426 | 13..217 | 98 | | Minus |
BO15194.5prime Sequence
782 bp (743 high quality bases) assembled on 2006-06-16
> BO15194.5prime
GAAGTTATCAGTCGACATGATGCTGCTCCAGCTGGGCTGCGTGGCCCTCT
TCTGCTGCTTGGTTAGCGGTGCCTCGAATTTCCCTCCCGAACTGCCGCGC
TGCCACATGGGCGACACCAGCTGCATCATCAACGTGTCGCACATGCTGAT
CAGACAGCACGCGAGGACCGGCTATCCGTCCGCTGGATTCCCCCAGGTGG
AGCCCTTCCTGATCAAGCGCTTCGACATCTCCGACGGACGCACTGGCTCC
CTGAATCTAAAGCTCAACTTCAGGGACGTGAATGTGGAGGGCCTGTCCAG
TGTGAAGTTCGACAGAGCCGTTGGCTTTGGCGCTGATCCTGCAACCAGCA
AGTTTGAGATGTACGGATCCTTTCCCAAGATCGTGCTGAAGGGCAAGTAC
GTGGCGGATGGACGCATCCTGATCCTGCCGATTCGTGGCGATGGCGATGC
CGAGATCGTGTTGCACAATCCCAAGTTTTCGGTGAAATTCAAGCCGGGCA
CACAGCAGCGCAATGGACGCACCTACCTGAGCGTGGATAAGCTCAAGGTT
CTGGTGGAGCCACAAAAGATGAACATTCGGCTGGAGAACCTCTTTAATGG
CGACCAGGCATTGGGCACCAATCTGAATCAGTTCCTCAACGACAACTGGA
CGGAGGTGTGGAACGAGCTGCATCCCTCCATTCATGTGGCCATCGCCGAG
ATCATGAAGAGCGTTCTCTCGCAGCTCTTCAAGCGCTTCGCCTACGAGGA
TTTATTCCTCGAGAACGCAAGCTTTCTAGACC
BO15194.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-PA | 753 | CG11852-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-RA | 1045 | CG11852-RA | 100..849 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25238200..25238446 | 322..568 | 1235 | 100 | Plus |
3R | 32079331 | 3R | 25237837..25238074 | 84..321 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 25238501..25238699 | 568..766 | 995 | 100 | Plus |
3R | 32079331 | 3R | 25237713..25237779 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:53:37 has no hits.
BO15194.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:27 Download gff for
BO15194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:09 Download gff for
BO15194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:57 Download gff for
BO15194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 96..854 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:46:13 Download gff for
BO15194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 96..854 | 9..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:46:13 Download gff for
BO15194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25237709..25237779 | 9..83 | 94 | -> | Plus |
3R | 25237837..25238074 | 84..321 | 100 | -> | Plus |
3R | 25238200..25238445 | 322..567 | 100 | -> | Plus |
3R | 25238501..25238704 | 568..772 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:57 Download gff for
BO15194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21063431..21063501 | 9..83 | 94 | -> | Plus |
arm_3R | 21063559..21063796 | 84..321 | 100 | -> | Plus |
arm_3R | 21063922..21064167 | 322..567 | 100 | -> | Plus |
arm_3R | 21064223..21064426 | 568..772 | 98 | | Plus |
BO15194.complete Sequence
784 bp (784 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633381
> BO15194.complete
GAAGTTATCAGTCGACATGATGCTGCTCCAGCTGGGCTGCGTGGCCCTCT
TCTGCTGCTTGGTTAGCGGTGCCTCGAATTTCCCTCCCGAACTGCCGCGC
TGCCACATGGGCGACACCAGCTGCATCATCAACGTGTCGCACATGCTGAT
CAGACAGCACGCGAGGACCGGCTATCCGTCCGCTGGATTCCCCCAGGTGG
AGCCCTTCCTGATCAAGCGCTTCGACATCTCCGACGGACGCACTGGCTCC
CTGAATCTAAAGCTCAACTTCAGGGACGTGAATGTGGAGGGCCTGTCCAG
TGTGAAGTTCGACAGAGCCGTTGGCTTTGGCGCTGATCCTGCAACCAGCA
AGTTTGAGATGTACGGATCCTTTCCCAAGATCGTGCTGAAGGGCAAGTAC
GTGGCGGATGGACGCATCCTGATCCTGCCGATTCGTGGCGATGGCGATGC
CGAGATCGTGTTGCACAATCCCAAGTTTTCGGTGAAATTCAAGCCGGGCA
CACAGCAGCGCAATGGACGCACCTACCTGAGCGTGGATAAGCTCAAGGTT
CTGGTGGAGCCACAAAAGATGAACATTCGGCTGGAGAACCTCTTTAATGG
CGACCAGGCATTGGGCACCAATCTGAATCAGTTCCTCAACGACAACTGGA
CGGAGGTGTGGAACGAGCTGCATCCCTCCATTCATGTGGCCATCGCCGAG
ATCATGAAGAGCGTTCTCTCGCAGCTCTTCAAGCGCTTCGCCTACGAGGA
TTTATTCCTCGAGAACGCAAGCTTTCTAGACCAT
BO15194.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-RA | 753 | CG11852-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-RA | 1045 | CG11852-RA | 100..849 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25238200..25238446 | 322..568 | 1235 | 100 | Plus |
3R | 32079331 | 3R | 25237837..25238074 | 84..321 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 25238501..25238699 | 568..766 | 995 | 100 | Plus |
3R | 32079331 | 3R | 25237713..25237779 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:54:33 has no hits.
BO15194.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:50 Download gff for
BO15194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:55 Download gff for
BO15194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 85..843 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:54 Download gff for
BO15194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 100..849 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:50 Download gff for
BO15194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 85..843 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:09 Download gff for
BO15194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11852-RA | 100..849 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:09 Download gff for
BO15194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25237713..25237779 | 17..83 | 100 | -> | Plus |
3R | 25237837..25238074 | 84..321 | 100 | -> | Plus |
3R | 25238200..25238445 | 322..567 | 100 | -> | Plus |
3R | 25238501..25238699 | 568..768 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:54 Download gff for
BO15194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21063435..21063501 | 17..83 | 100 | -> | Plus |
arm_3R | 21063559..21063796 | 84..321 | 100 | -> | Plus |
arm_3R | 21063922..21064167 | 322..567 | 100 | -> | Plus |
arm_3R | 21064223..21064421 | 568..768 | 99 | | Plus |
BO15194.pep Sequence
Translation from 16 to 784
> BO15194.pep
MMLLQLGCVALFCCLVSGASNFPPELPRCHMGDTSCIINVSHMLIRQHAR
TGYPSAGFPQVEPFLIKRFDISDGRTGSLNLKLNFRDVNVEGLSSVKFDR
AVGFGADPATSKFEMYGSFPKIVLKGKYVADGRILILPIRGDGDAEIVLH
NPKFSVKFKPGTQQRNGRTYLSVDKLKVLVEPQKMNIRLENLFNGDQALG
TNLNQFLNDNWTEVWNELHPSIHVAIAEIMKSVLSQLFKRFAYEDLFLEN
ASFLDH
BO15194.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11852-PA | 250 | CG11852-PA | 1..250 | 1..250 | 1311 | 100 | Plus |
CG11854-PB | 250 | CG11854-PB | 1..249 | 2..248 | 371 | 34.4 | Plus |
to-PB | 249 | CG11853-PB | 1..249 | 3..251 | 342 | 30.4 | Plus |
to-PA | 249 | CG11853-PA | 1..249 | 3..251 | 342 | 30.4 | Plus |
CG10407-PB | 259 | CG10407-PB | 31..256 | 19..246 | 313 | 30 | Plus |