Clone Sequence Records
BO15195.3prime Sequence
590 bp (590 high quality bases) assembled on 2006-06-16
> BO15195.3prime
ATGGTCTAGAAAGCTTGCCTTCCTGTTATTGTTGATCTTTTCGTTAATCC
AATTTACGATCTCCTGAACACCAGACCCTGTCCGCATGGAACATTCCTCA
AAAGTCCAATCTCGACCAGTTAGGCGATATAGGCCCATCAAATCGATAAC
CGTGGACATGGACAGGGATCCCGAGGCGTCCTTCTTGTTGGACACGATCA
GCAGCGGAGCATTATCCAGTTCCTGGTGCATCAAAACATCGCATAAAACA
CATCGCGCCTCGCTTAGCCGCAGTGCATCCGTGCTATCCAGTACAAAAAT
CAAAACATTCACTTTCTTATAATACTTTGGCCAGATCTGGCGATTCTTCA
GTTCTCCGTTAATATCCCACAACTGGACTCTGAAATTATTTATGGTGAAG
CTCCATTCACTAACTTGATTGTTAGATTCCTTGGATTCTCCATTGAAAAT
TTCCGCCAGGCGGTCTGTCAACGTGGATTTTCCCGCATTGTCTAATCCTA
AAATGAGCAGACATGATTTCTGAGAGCCTGCGGGCAGGATCTTTTTTATG
AACGAAACAGGTCCGTAAAAACACATGTCGACTGATAACT
BO15195.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17819-PA | 561 | CG17819-RA | 1..558 | 576..19 | 2790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17819-RA | 646 | CG17819-RA | 15..573 | 577..19 | 2795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21884902..21885140 | 63..301 | 1195 | 100 | Plus |
3R | 32079331 | 3R | 21885395..21885536 | 436..577 | 710 | 100 | Plus |
3R | 32079331 | 3R | 21885198..21885332 | 301..435 | 675 | 100 | Plus |
3R | 32079331 | 3R | 21884801..21884847 | 19..65 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:53:15 has no hits.
BO15195.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:45 Download gff for
BO15195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17819-PA | 1..561 | 16..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:19 Download gff for
BO15195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17819-RA | 11..573 | 19..581 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:42 Download gff for
BO15195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17819-RA | 11..573 | 19..581 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:42 Download gff for
BO15195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21884801..21884845 | 19..63 | 100 | <- | Plus |
3R | 21884903..21885139 | 64..300 | 100 | <- | Plus |
3R | 21885198..21885332 | 301..435 | 100 | <- | Plus |
3R | 21885395..21885540 | 436..581 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:19 Download gff for
BO15195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17710523..17710567 | 19..63 | 100 | <- | Plus |
arm_3R | 17710625..17710861 | 64..300 | 100 | <- | Plus |
arm_3R | 17710920..17711054 | 301..435 | 100 | <- | Plus |
arm_3R | 17711117..17711262 | 436..581 | 98 | | Plus |
BO15195.5prime Sequence
590 bp (590 high quality bases) assembled on 2006-06-16
> BO15195.5prime
GAAGTTATCAGTCGACATGTGTTTTTACGGACCTGTTTCGTTCATAAAAA
AGATCCTGCCCGCAGGCTCTCAGAAATCATGTCTGCTCATTTTAGGATTA
GACAATGCGGGAAAATCCACGTTGACAGACCGCCTGGCGGAAATTTTCAA
TGGAGAATCCAAGGAATCTAACAATCAAGTTAGTGAATGGAGCTTCACCA
TAAATAATTTCAGAGTCCAGTTGTGGGATATTAACGGAGAACTGAAGAAT
CGCCAGATCTGGCCAAAGTATTATAAGAAAGTGAATGTTTTGATTTTTGT
ACTGGATAGCACGGATGCACTGCGGCTAAGCGAGGCGCGATGTGTTTTAT
GCGATGTTTTGATGCACCAGGAACTGGATAATGCTCCGCTGCTGATCGTG
TCCAACAAGAAGGACGCCTCGGGATCCCTGTCCATGTCCACGGTTATCGA
TTTGATGGGCCTATATCGCCTAACTGGTCGAGATTGGACTTTTGAGGAAT
GTTCCATGCGGACAGGGTCTGGTGTTCAGGAGATCGTAAATTGGATTAAC
GAAAAGATCAACAATAACAGGAAGGCAAGCTTTCTAGACC
BO15195.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17819-PA | 561 | CG17819-RA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17819-RA | 646 | CG17819-RA | 15..573 | 16..574 | 2795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21884902..21885140 | 530..292 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 21885395..21885536 | 157..16 | 710 | 100 | Minus |
3R | 32079331 | 3R | 21885198..21885332 | 292..158 | 675 | 100 | Minus |
3R | 32079331 | 3R | 21884801..21884847 | 574..528 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:21:49 has no hits.
BO15195.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:28 Download gff for
BO15195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17819-PA | 1..561 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:10 Download gff for
BO15195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17819-PA | 1..561 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:29:49 Download gff for
BO15195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17819-RA | 11..573 | 12..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:55:36 Download gff for
BO15195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17819-RA | 11..573 | 12..574 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:55:36 Download gff for
BO15195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21884903..21885139 | 293..529 | 100 | <- | Minus |
3R | 21885198..21885332 | 158..292 | 100 | <- | Minus |
3R | 21885395..21885540 | 12..157 | 98 | | Minus |
3R | 21884801..21884845 | 530..574 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:29:49 Download gff for
BO15195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17710523..17710567 | 530..574 | 100 | <- | Minus |
arm_3R | 17710625..17710861 | 293..529 | 100 | <- | Minus |
arm_3R | 17710920..17711054 | 158..292 | 100 | <- | Minus |
arm_3R | 17711117..17711262 | 12..157 | 98 | | Minus |
BO15195.complete Sequence
592 bp (592 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633382
> BO15195.complete
GAAGTTATCAGTCGACATGTGTTTTTACGGACCTGTTTCGTTCATAAAAA
AGATCCTGCCCGCAGGCTCTCAGAAATCATGTCTGCTCATTTTAGGATTA
GACAATGCGGGAAAATCCACGTTGACAGACCGCCTGGCGGAAATTTTCAA
TGGAGAATCCAAGGAATCTAACAATCAAGTTAGTGAATGGAGCTTCACCA
TAAATAATTTCAGAGTCCAGTTGTGGGATATTAACGGAGAACTGAAGAAT
CGCCAGATCTGGCCAAAGTATTATAAGAAAGTGAATGTTTTGATTTTTGT
ACTGGATAGCACGGATGCACTGCGGCTAAGCGAGGCGCGATGTGTTTTAT
GCGATGTTTTGATGCACCAGGAACTGGATAATGCTCCGCTGCTGATCGTG
TCCAACAAGAAGGACGCCTCGGGATCCCTGTCCATGTCCACGGTTATCGA
TTTGATGGGCCTATATCGCCTAACTGGTCGAGATTGGACTTTTGAGGAAT
GTTCCATGCGGACAGGGTCTGGTGTTCAGGAGATCGTAAATTGGATTAAC
GAAAAGATCAACAATAACAGGAAGGCAAGCTTTCTAGACCAT
BO15195.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17819-RA | 561 | CG17819-PA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17819-RA | 646 | CG17819-RA | 15..573 | 16..574 | 2795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21884902..21885140 | 530..292 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 21885395..21885536 | 157..16 | 710 | 100 | Minus |
3R | 32079331 | 3R | 21885198..21885332 | 292..158 | 675 | 100 | Minus |
3R | 32079331 | 3R | 21884801..21884847 | 574..528 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:02:57 has no hits.
BO15195.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:51 Download gff for
BO15195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17819-RA | 1..561 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:02 Download gff for
BO15195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17819-RA | 11..573 | 12..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:18 Download gff for
BO15195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17819-RA | 16..573 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:51 Download gff for
BO15195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17819-RA | 11..573 | 12..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:21 Download gff for
BO15195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17819-RA | 16..573 | 17..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:21 Download gff for
BO15195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21884798..21884845 | 530..576 | 95 | <- | Minus |
3R | 21884903..21885139 | 293..529 | 100 | <- | Minus |
3R | 21885198..21885332 | 158..292 | 100 | <- | Minus |
3R | 21885395..21885535 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:18 Download gff for
BO15195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17711117..17711257 | 17..157 | 100 | | Minus |
arm_3R | 17710520..17710567 | 530..576 | 95 | <- | Minus |
arm_3R | 17710625..17710861 | 293..529 | 100 | <- | Minus |
arm_3R | 17710920..17711054 | 158..292 | 100 | <- | Minus |
BO15195.pep Sequence
Translation from 16 to 592
> BO15195.pep
MCFYGPVSFIKKILPAGSQKSCLLILGLDNAGKSTLTDRLAEIFNGESKE
SNNQVSEWSFTINNFRVQLWDINGELKNRQIWPKYYKKVNVLIFVLDSTD
ALRLSEARCVLCDVLMHQELDNAPLLIVSNKKDASGSLSMSTVIDLMGLY
RLTGRDWTFEECSMRTGSGVQEIVNWINEKINNNRKASFLDH
BO15195.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17819-PA | 186 | CG17819-PA | 1..186 | 1..186 | 972 | 100 | Plus |
dnd-PA | 179 | CG6560-PA | 2..173 | 5..177 | 294 | 34.8 | Plus |
Arf79F-PJ | 182 | CG8385-PJ | 14..179 | 17..183 | 245 | 33.9 | Plus |
Arf79F-PI | 182 | CG8385-PI | 14..179 | 17..183 | 245 | 33.9 | Plus |
Arf79F-PH | 182 | CG8385-PH | 14..179 | 17..183 | 245 | 33.9 | Plus |