Clone BO15196 Report

Search the DGRC for BO15196

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:151
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG9014-RA
Protein status:BO15196.pep: validated full length
Sequenced Size:1018

Clone Sequence Records

BO15196.3prime Sequence

574 bp (524 high quality bases) assembled on 2006-05-29

> BO15196.3prime
ATGGTCTAGAAAGCTTGCAATAATCTCTTCGCCAAATATTACCTCATTCA
CACCGTCGACGAAGATCATGACCAGTCCGAGGATGGGGCGCAGATTCTCC
GGCATGTGGGTGTTTTCGCCGCCCAGAACAACCACGCACGGTTTGCCAAT
GACCAGACCGGGCACCAATCGGGTGACATACCGACTCATGAGATGTTGGT
TCTCGCGGCGATCGTCCAACGTCATCAGACCTTCGGGCCAGCGATCCTCG
TGGCAACGTTCAACCAGCATATTGAGCATATGCATCGGACAGCCGCTTTC
ACGCAAAACGTCGCGCACCATCAGGTGCATGGGATTGTCCGGCGTGGAGA
TCAGACTGCCCCACGTATGGATGTTGGCCAGAGGGAGTCCATGGCCCCAC
TGCATCAGTGAGAAGCGGTCCAGTTGTTCGCCAATGTTGCGCAGCATGGG
ATTGGTCGATCGCAGTGCTGCGATATAGTACTGGAACAGCTCCATCTCTC
GGGCGCTGGCTGGAGCTCTGCTCCTCCATATCGGATTGCTTCTGCTTCAG
ATCGGAAACCTCCTTTCGCCAGTT

BO15196.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9014-PA 987 CG9014-RA 501..984 502..19 2420 100 Minus
CG9014-PA 987 CG9014-RA 439..502 565..502 320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9014-RB 1377 CG9014-RB 589..1142 574..19 2730 99.6 Minus
CG9014-RA 1368 CG9014-RA 580..1133 574..19 2730 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13722396..13722941 19..565 2685 99.8 Plus
Blast to na_te.dros performed on 2015-02-10 16:57:27 has no hits.

BO15196.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:29 Download gff for BO15196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9014-PA 431..987 15..574 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:11 Download gff for BO15196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9014-PA 431..987 15..574 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:01:48 Download gff for BO15196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 580..1138 13..574 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:20 Download gff for BO15196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 580..1138 13..574 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:20 Download gff for BO15196.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13722391..13722949 13..574 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:01:48 Download gff for BO15196.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13722391..13722949 13..574 99   Plus

BO15196.5prime Sequence

777 bp (734 high quality bases) assembled on 2006-06-16

> BO15196.5prime
GAAGTTATCAGTCGACATGGGCTTTGATCTAAACTGCATTGTGGGCCACG
TTGACGAGGAGCTCATCTGTCCAATTTGCACAGATGTCCTGGAGGAGCCG
GTCCAGTCATCGGAATGCGAGCACGCCTTCTGTCGCGCCTGCATCGACAA
GTGGATGATCCAGAAACAGATTTGCCCGGTGGACCGCTCCGGGCTACTGA
CCTCACATCTGGTGCCCGTTTCGCGCCTAATGCGCAACATGCTATCCCGC
CTAAAGATCAAGTGCACCTTCTCGCAAAGCGGTTGTGCCCAAATGCTGGC
CCTCGAGGAGTTCCGGACCCATGTCGCCGCCTGCGAGCATAATCCCAAGG
TGGTTGTCGAGTGCAGCAAGGGGTGCGGAATGAAGGTACCCAAGGACGAG
ATGTCGCGCCACAACTGTGTGTTCGAACTGCGCGAGCTGGTGGAGAAACT
GGCGAAGGAGGTTTCCGATCTGAAGCAGAAGCAATCCGATATGGAGGAGC
AGAGCTCCAGCCAGCGCCGAGAGATGGAGCTGTTCCAGTACTATATCGCA
GCACTGCGATCGACCAATCCCATGCTGCGCAACATTGGCGAACAACTGGA
CCGCTTCTCACTGATGCAGTGGGGCCATGGACTCCCTCTGGCCAACATCC
ATACGTGGGGCAGTCTGATCTCCACGCCGGACAATCCCATGCACCTGATG
GTGCGCGACGTTTTGCGTGAAAGCGGCTGTCCGATGCATATGCTCAATAT
GCTGGTTGAACGTTGCCACGAGGATCG

BO15196.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9014-PA 987 CG9014-RA 1..761 17..777 3805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9014-RB 1377 CG9014-RB 154..919 12..777 3815 99.9 Plus
CG9014-RA 1368 CG9014-RA 145..910 12..777 3815 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13722619..13723013 777..383 1975 100 Minus
2L 23513712 2L 13723067..13723442 387..12 1865 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 19:53:15 has no hits.

BO15196.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:30 Download gff for BO15196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9014-PA 1..761 17..777 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:13 Download gff for BO15196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9014-PA 1..761 17..777 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:12 Download gff for BO15196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 145..910 12..777 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:01:58 Download gff for BO15196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 145..910 12..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:01:58 Download gff for BO15196.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13722619..13723010 386..777 100 <- Minus
2L 13723069..13723442 12..385 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:12 Download gff for BO15196.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13722619..13723010 386..777 100 <- Minus
arm_2L 13723069..13723442 12..385 99   Minus

BO15196.complete Sequence

1018 bp (1018 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633383

> BO15196.complete
GAAGTTATCAGTCGACATGGGCTTTGATCTAAACTGCATTGTGGGCCACG
TTGACGAGGAGCTCATCTGTCCAATTTGCACAGATGTCCTGGAGGAGCCG
GTCCAGTCATCGGAATGCGAGCACGCCTTCTGTCGCGCCTGCATCGACAA
GTGGATGATCCAGAAACAGATTTGCCCGGTGGACCGCTCCGGGCTACTGA
CCTCACATCTGGTGCCCGTTTCGCGCCTAATGCGCAACATGCTATCCCGC
CTAAAGATCAAGTGCACCTTCTCGCAAAGCGGTTGTGCCCAAATGCTGGC
CCTCGAGGAGTTCCGGACCCATGTCGCCGCCTGCGAGCATAATCCCAAGG
TGGTTGTCGAGTGCAGCAAGGGGTGCGGAATGAAGGTACCCAAGGACGAG
ATGTCGCGCCACAACTGTGTGTTCGAACTGCGCGAGCTGGTGGAGAAACT
GGCGAAGGAGGTTTCCGATCTGAAGCAGAAGCAATCCGATATGGAGGAGC
AGAGCTCCAGCCAGCGCCGAGAGATGGAGCTGTTCCAGTACTATATCGCA
GCACTGCGATCGACCAATCCCATGCTGCGCAACATTGGCGAACAACTGGA
CCGCTTCTCACTGATGCAGTGGGGCCATGGACTCCCTCTGGCCAACATCC
ATACGTGGGGCAGTCTGATCTCCACGCCGGACAATCCCATGCACCTGATG
GTGCGCGACGTTTTGCGTGAAAGCGGCTGTCCGATGCATATGCTCAATAT
GCTGGTTGAACGTTGCCACGAGGATCGCTGGCCCGAAGGTCTGATGACGT
TGGACGATCGCCGCGAGAACCAACATCTCATGAGTCGGTATGTCACCCGA
TTGGTGCCCGGTCTGGTCATTGGCAAACCGTGCGTGGTTGTTCTGGGCGG
CGAAAACACCCACATGCCGGAGAATCTGCGCCCCATCCTCGGACTGGTCA
TGATCTTCGTCGACGGTGTGAATGAGGTAATATTTGGCGAAGAGATTATT
GCAAGCTTTCTAGACCAT

BO15196.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9014-RB 987 CG9014-PB 1..984 17..1000 4920 100 Plus
CG9014-RA 987 CG9014-PA 1..984 17..1000 4920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9014-RB 1377 CG9014-RB 154..1142 12..1000 4930 99.9 Plus
CG9014-RA 1368 CG9014-RA 145..1133 12..1000 4930 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13722396..13723013 1000..383 3090 100 Minus
2L 23513712 2L 13723067..13723442 387..12 1865 99.7 Minus
Blast to na_te.dros performed on 2014-11-26 22:21:27 has no hits.

BO15196.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:52 Download gff for BO15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 1..987 17..1004 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:04 Download gff for BO15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 145..1138 12..1006 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:16 Download gff for BO15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 150..1133 17..1002 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:52 Download gff for BO15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 145..1138 12..1006 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:35 Download gff for BO15196.complete
Subject Subject Range Query Range Percent Splice Strand
CG9014-RA 150..1133 17..1002 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:35 Download gff for BO15196.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13722394..13723010 386..1002 99 <- Minus
2L 13723069..13723437 17..385 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:16 Download gff for BO15196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13722394..13723010 386..1002 99 <- Minus
arm_2L 13723069..13723437 17..385 100   Minus

BO15196.pep Sequence

Translation from 16 to 1018

> BO15196.pep
MGFDLNCIVGHVDEELICPICTDVLEEPVQSSECEHAFCRACIDKWMIQK
QICPVDRSGLLTSHLVPVSRLMRNMLSRLKIKCTFSQSGCAQMLALEEFR
THVAACEHNPKVVVECSKGCGMKVPKDEMSRHNCVFELRELVEKLAKEVS
DLKQKQSDMEEQSSSQRREMELFQYYIAALRSTNPMLRNIGEQLDRFSLM
QWGHGLPLANIHTWGSLISTPDNPMHLMVRDVLRESGCPMHMLNMLVERC
HEDRWPEGLMTLDDRRENQHLMSRYVTRLVPGLVIGKPCVVVLGGENTHM
PENLRPILGLVMIFVDGVNEVIFGEEIIASFLDH

BO15196.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9014-PB 328 CG9014-PB 1..328 1..328 1749 100 Plus
CG9014-PA 328 CG9014-PA 1..328 1..328 1749 100 Plus
elgi-PB 315 CG17033-PB 1..314 1..318 804 45.3 Plus
elgi-PA 315 CG17033-PA 1..314 1..318 804 45.3 Plus
Traf6-PA 475 CG10961-PA 91..194 10..108 162 35.2 Plus