Clone Sequence Records
BO15196.3prime Sequence
574 bp (524 high quality bases) assembled on 2006-05-29
> BO15196.3prime
ATGGTCTAGAAAGCTTGCAATAATCTCTTCGCCAAATATTACCTCATTCA
CACCGTCGACGAAGATCATGACCAGTCCGAGGATGGGGCGCAGATTCTCC
GGCATGTGGGTGTTTTCGCCGCCCAGAACAACCACGCACGGTTTGCCAAT
GACCAGACCGGGCACCAATCGGGTGACATACCGACTCATGAGATGTTGGT
TCTCGCGGCGATCGTCCAACGTCATCAGACCTTCGGGCCAGCGATCCTCG
TGGCAACGTTCAACCAGCATATTGAGCATATGCATCGGACAGCCGCTTTC
ACGCAAAACGTCGCGCACCATCAGGTGCATGGGATTGTCCGGCGTGGAGA
TCAGACTGCCCCACGTATGGATGTTGGCCAGAGGGAGTCCATGGCCCCAC
TGCATCAGTGAGAAGCGGTCCAGTTGTTCGCCAATGTTGCGCAGCATGGG
ATTGGTCGATCGCAGTGCTGCGATATAGTACTGGAACAGCTCCATCTCTC
GGGCGCTGGCTGGAGCTCTGCTCCTCCATATCGGATTGCTTCTGCTTCAG
ATCGGAAACCTCCTTTCGCCAGTT
BO15196.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9014-PA | 987 | CG9014-RA | 501..984 | 502..19 | 2420 | 100 | Minus |
CG9014-PA | 987 | CG9014-RA | 439..502 | 565..502 | 320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9014-RB | 1377 | CG9014-RB | 589..1142 | 574..19 | 2730 | 99.6 | Minus |
CG9014-RA | 1368 | CG9014-RA | 580..1133 | 574..19 | 2730 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13722396..13722941 | 19..565 | 2685 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:57:27 has no hits.
BO15196.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:29 Download gff for
BO15196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-PA | 431..987 | 15..574 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:11 Download gff for
BO15196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-PA | 431..987 | 15..574 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:01:48 Download gff for
BO15196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-RA | 580..1138 | 13..574 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:20 Download gff for
BO15196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-RA | 580..1138 | 13..574 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:20 Download gff for
BO15196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13722391..13722949 | 13..574 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:01:48 Download gff for
BO15196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13722391..13722949 | 13..574 | 99 | | Plus |
BO15196.5prime Sequence
777 bp (734 high quality bases) assembled on 2006-06-16
> BO15196.5prime
GAAGTTATCAGTCGACATGGGCTTTGATCTAAACTGCATTGTGGGCCACG
TTGACGAGGAGCTCATCTGTCCAATTTGCACAGATGTCCTGGAGGAGCCG
GTCCAGTCATCGGAATGCGAGCACGCCTTCTGTCGCGCCTGCATCGACAA
GTGGATGATCCAGAAACAGATTTGCCCGGTGGACCGCTCCGGGCTACTGA
CCTCACATCTGGTGCCCGTTTCGCGCCTAATGCGCAACATGCTATCCCGC
CTAAAGATCAAGTGCACCTTCTCGCAAAGCGGTTGTGCCCAAATGCTGGC
CCTCGAGGAGTTCCGGACCCATGTCGCCGCCTGCGAGCATAATCCCAAGG
TGGTTGTCGAGTGCAGCAAGGGGTGCGGAATGAAGGTACCCAAGGACGAG
ATGTCGCGCCACAACTGTGTGTTCGAACTGCGCGAGCTGGTGGAGAAACT
GGCGAAGGAGGTTTCCGATCTGAAGCAGAAGCAATCCGATATGGAGGAGC
AGAGCTCCAGCCAGCGCCGAGAGATGGAGCTGTTCCAGTACTATATCGCA
GCACTGCGATCGACCAATCCCATGCTGCGCAACATTGGCGAACAACTGGA
CCGCTTCTCACTGATGCAGTGGGGCCATGGACTCCCTCTGGCCAACATCC
ATACGTGGGGCAGTCTGATCTCCACGCCGGACAATCCCATGCACCTGATG
GTGCGCGACGTTTTGCGTGAAAGCGGCTGTCCGATGCATATGCTCAATAT
GCTGGTTGAACGTTGCCACGAGGATCG
BO15196.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9014-PA | 987 | CG9014-RA | 1..761 | 17..777 | 3805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9014-RB | 1377 | CG9014-RB | 154..919 | 12..777 | 3815 | 99.9 | Plus |
CG9014-RA | 1368 | CG9014-RA | 145..910 | 12..777 | 3815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13722619..13723013 | 777..383 | 1975 | 100 | Minus |
2L | 23513712 | 2L | 13723067..13723442 | 387..12 | 1865 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:53:15 has no hits.
BO15196.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:30 Download gff for
BO15196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:13 Download gff for
BO15196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:12 Download gff for
BO15196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-RA | 145..910 | 12..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:01:58 Download gff for
BO15196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-RA | 145..910 | 12..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:01:58 Download gff for
BO15196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13722619..13723010 | 386..777 | 100 | <- | Minus |
2L | 13723069..13723442 | 12..385 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:12 Download gff for
BO15196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13722619..13723010 | 386..777 | 100 | <- | Minus |
arm_2L | 13723069..13723442 | 12..385 | 99 | | Minus |
BO15196.complete Sequence
1018 bp (1018 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633383
> BO15196.complete
GAAGTTATCAGTCGACATGGGCTTTGATCTAAACTGCATTGTGGGCCACG
TTGACGAGGAGCTCATCTGTCCAATTTGCACAGATGTCCTGGAGGAGCCG
GTCCAGTCATCGGAATGCGAGCACGCCTTCTGTCGCGCCTGCATCGACAA
GTGGATGATCCAGAAACAGATTTGCCCGGTGGACCGCTCCGGGCTACTGA
CCTCACATCTGGTGCCCGTTTCGCGCCTAATGCGCAACATGCTATCCCGC
CTAAAGATCAAGTGCACCTTCTCGCAAAGCGGTTGTGCCCAAATGCTGGC
CCTCGAGGAGTTCCGGACCCATGTCGCCGCCTGCGAGCATAATCCCAAGG
TGGTTGTCGAGTGCAGCAAGGGGTGCGGAATGAAGGTACCCAAGGACGAG
ATGTCGCGCCACAACTGTGTGTTCGAACTGCGCGAGCTGGTGGAGAAACT
GGCGAAGGAGGTTTCCGATCTGAAGCAGAAGCAATCCGATATGGAGGAGC
AGAGCTCCAGCCAGCGCCGAGAGATGGAGCTGTTCCAGTACTATATCGCA
GCACTGCGATCGACCAATCCCATGCTGCGCAACATTGGCGAACAACTGGA
CCGCTTCTCACTGATGCAGTGGGGCCATGGACTCCCTCTGGCCAACATCC
ATACGTGGGGCAGTCTGATCTCCACGCCGGACAATCCCATGCACCTGATG
GTGCGCGACGTTTTGCGTGAAAGCGGCTGTCCGATGCATATGCTCAATAT
GCTGGTTGAACGTTGCCACGAGGATCGCTGGCCCGAAGGTCTGATGACGT
TGGACGATCGCCGCGAGAACCAACATCTCATGAGTCGGTATGTCACCCGA
TTGGTGCCCGGTCTGGTCATTGGCAAACCGTGCGTGGTTGTTCTGGGCGG
CGAAAACACCCACATGCCGGAGAATCTGCGCCCCATCCTCGGACTGGTCA
TGATCTTCGTCGACGGTGTGAATGAGGTAATATTTGGCGAAGAGATTATT
GCAAGCTTTCTAGACCAT
BO15196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9014-RB | 987 | CG9014-PB | 1..984 | 17..1000 | 4920 | 100 | Plus |
CG9014-RA | 987 | CG9014-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9014-RB | 1377 | CG9014-RB | 154..1142 | 12..1000 | 4930 | 99.9 | Plus |
CG9014-RA | 1368 | CG9014-RA | 145..1133 | 12..1000 | 4930 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13722396..13723013 | 1000..383 | 3090 | 100 | Minus |
2L | 23513712 | 2L | 13723067..13723442 | 387..12 | 1865 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:21:27 has no hits.
BO15196.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:52 Download gff for
BO15196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-RA | 1..987 | 17..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:04 Download gff for
BO15196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-RA | 145..1138 | 12..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:16 Download gff for
BO15196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-RA | 150..1133 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:52 Download gff for
BO15196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-RA | 145..1138 | 12..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:35 Download gff for
BO15196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9014-RA | 150..1133 | 17..1002 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:35 Download gff for
BO15196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13722394..13723010 | 386..1002 | 99 | <- | Minus |
2L | 13723069..13723437 | 17..385 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:16 Download gff for
BO15196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13722394..13723010 | 386..1002 | 99 | <- | Minus |
arm_2L | 13723069..13723437 | 17..385 | 100 | | Minus |
BO15196.pep Sequence
Translation from 16 to 1018
> BO15196.pep
MGFDLNCIVGHVDEELICPICTDVLEEPVQSSECEHAFCRACIDKWMIQK
QICPVDRSGLLTSHLVPVSRLMRNMLSRLKIKCTFSQSGCAQMLALEEFR
THVAACEHNPKVVVECSKGCGMKVPKDEMSRHNCVFELRELVEKLAKEVS
DLKQKQSDMEEQSSSQRREMELFQYYIAALRSTNPMLRNIGEQLDRFSLM
QWGHGLPLANIHTWGSLISTPDNPMHLMVRDVLRESGCPMHMLNMLVERC
HEDRWPEGLMTLDDRRENQHLMSRYVTRLVPGLVIGKPCVVVLGGENTHM
PENLRPILGLVMIFVDGVNEVIFGEEIIASFLDH
BO15196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9014-PB | 328 | CG9014-PB | 1..328 | 1..328 | 1749 | 100 | Plus |
CG9014-PA | 328 | CG9014-PA | 1..328 | 1..328 | 1749 | 100 | Plus |
elgi-PB | 315 | CG17033-PB | 1..314 | 1..318 | 804 | 45.3 | Plus |
elgi-PA | 315 | CG17033-PA | 1..314 | 1..318 | 804 | 45.3 | Plus |
Traf6-PA | 475 | CG10961-PA | 91..194 | 10..108 | 162 | 35.2 | Plus |