Clone Sequence Records
BO15209.5prime Sequence
827 bp (796 high quality bases) assembled on 2006-06-16
> BO15209.5prime
GAAGTTATCAGTCGACATGTCGAATAGGGAACTGCAACTGAATTCGGGCA
TGAAGTGCGCCAAGTACATGCTCATCATCGTGAGCTTCATGTTTGCGCTG
ACCGCCATCCTCCTGATTATGGTTGGAACTACGATCCAGACCATCTTCGG
CGACTTCAGCCTCTTCATCGATGGACACTTCTCGTCGCCACCGGCACTCC
TCATTGCCATCGGATTCATTCTGATCGCAGTGGCCGCACTGGGGGCCTAT
GGAGCCGTCAAGGAGAGTGTGATGGTCATTAATCTGTACGGAGTGTGCCT
TTTCCTGGTGTTCATCCTCGAGGTTTCTGCCGCCATCGCCGCCTTTGTGA
TGCAATCGCAGGTGAGGGGCATGCTGATCCGAACCATGAACCAGGCCCTG
GCTGAGTATGAACACGATCCCTACGTGGAATCTGGAGTGGACTTCATGCA
ATCTATGCTAGAGTGTTGCGGAGTTAATGAGCCGGAGGACTGGAAGGACT
ACCTATCCGCCAATGTGAACTTCACTCTGGGAGTGGATGACGTGGTGGTG
CCCAACTCATGCTGCGGCAACCAACCAACAAGTCTGAACGACTCCACCCA
GATGACCTGTATGGAGACCTACGACTACGGCTGCTTCCGCAAGATGAACT
TCATTGTGTCGCAGAGCGCCATGCTGATTGCCACCGGAGCCACCACTGTG
GCCTTTGTCCAGCTTCTCGGCGTGCTCTGCGCCTTTATGCTGGCCAAGAC
GCTGCGCCGCAACAAGTCCATCCGCGAGGCACGCCGCTGGCAGCTGCAGC
AGAGCCTCGGCGTCCTCATCTCCGGCG
BO15209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9496-PB | 927 | Tsp29Fb-RB | 1..811 | 17..827 | 4055 | 100 | Plus |
CG9496-PA | 927 | Tsp29Fb-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fb-RC | 1230 | CG9496-RC | 162..972 | 17..827 | 4055 | 100 | Plus |
Tsp29Fb-RA | 1159 | CG9496-RA | 91..901 | 17..827 | 4055 | 100 | Plus |
Tsp29Fb-RB | 1116 | CG9496-RB | 48..858 | 17..827 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8939115..8939485 | 457..827 | 1855 | 100 | Plus |
2L | 23513712 | 2L | 8938568..8938757 | 97..286 | 950 | 100 | Plus |
2L | 23513712 | 2L | 8938856..8939027 | 286..457 | 860 | 100 | Plus |
2L | 23513712 | 2L | 8937551..8937635 | 17..101 | 410 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:32:07 has no hits.
BO15209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:36 Download gff for
BO15209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9496-PB | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:21 Download gff for
BO15209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9496-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:28 Download gff for
BO15209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RB | 41..858 | 9..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:46:45 Download gff for
BO15209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RB | 41..858 | 9..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:46:45 Download gff for
BO15209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8937544..8937631 | 9..97 | 96 | -> | Plus |
2L | 8938569..8938757 | 98..286 | 100 | -> | Plus |
2L | 8938857..8939027 | 287..457 | 100 | -> | Plus |
2L | 8939116..8939485 | 458..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:28 Download gff for
BO15209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8937544..8937631 | 9..97 | 96 | -> | Plus |
arm_2L | 8938569..8938757 | 98..286 | 100 | -> | Plus |
arm_2L | 8938857..8939027 | 287..457 | 100 | -> | Plus |
arm_2L | 8939116..8939485 | 458..827 | 100 | | Plus |
BO15209.complete Sequence
958 bp (958 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633385
> BO15209.complete
GAAGTTATCAGTCGACATGTCGAATAGGGAACTGCAACTGAATTCGGGCA
TGAAGTGCGCCAAGTACATGCTCATCATCGTGAGCTTCATGTTTGCGCTG
ACCGCCATCCTCCTGATTATGGTTGGAACTACGATCCAGACCATCTTCGG
CGACTTCAGCCTCTTCATCGATGGACACTTCTCGTCGCCACCGGCACTCC
TCATTGCCATCGGATTCATTCTGATCGCAGTGGCCGCACTGGGGGCCTAT
GGAGCCGTCAAGGAGAGTGTGATGGTCATTAATCTGTACGGAGTGTGCCT
TTTCCTGGTGTTCATCCTCGAGGTTTCTGCCGCCATCGCCGCCTTTGTGA
TGCAATCGCAGGTGAGGGGCATGCTGATCCGAACCATGAACCAGGCCCTG
GCTGAGTATGAACACGATCCCTACGTGGAATCTGGAGTGGACTTCATGCA
ATCTATGCTAGAGTGTTGCGGAGTTAATGAGCCGGAGGACTGGAAGGACT
ACCTATCCGCCAATGTGAACTTCACTCTGGGAGTGGATGACGTGGTGGTG
CCCAACTCATGCTGCGGCAACCAACCAACAAGTCTGAACGACTCCACCCA
GATGACCTGTATGGAGACCTACGACTACGGCTGCTTCCGCAAGATGAACT
TCATTGTGTCGCAGAGCGCCATGCTGATTGCCACCGGAGCCACCACTGTG
GCCTTTGTCCAGCTTCTCGGCGTGCTCTGCGCCTTTATGCTGGCCAAGAC
GCTGCGCCGCAACAAGTCCATCCGCGAGGCACGCCGCTGGCAGCTGCAGC
AGAGCCTCGGCGTCCTCATCTCCGGCGGAAAGATGGCACCGCCCCAGAAT
TCCGCTGTCACCGGCTATCAGCAGTTGGATAACGGAGAGCAGGGCTCCCA
CGAACCCTACACCTACACGCCCCAGAGCCCCAGCGTTAACGCAAGCTTTC
TAGACCAT
BO15209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fb-RC | 927 | CG9496-PC | 1..924 | 17..940 | 4620 | 100 | Plus |
Tsp29Fb-RA | 927 | CG9496-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
Tsp29Fb-RB | 927 | CG9496-PB | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fb-RC | 1230 | CG9496-RC | 162..1085 | 17..940 | 4620 | 100 | Plus |
Tsp29Fb-RA | 1159 | CG9496-RA | 91..1014 | 17..940 | 4620 | 100 | Plus |
Tsp29Fb-RB | 1116 | CG9496-RB | 48..971 | 17..940 | 4620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8939115..8939598 | 457..940 | 2420 | 100 | Plus |
2L | 23513712 | 2L | 8938568..8938757 | 97..286 | 950 | 100 | Plus |
2L | 23513712 | 2L | 8938856..8939027 | 286..457 | 860 | 100 | Plus |
2L | 23513712 | 2L | 8937551..8937635 | 17..101 | 410 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:59:50 has no hits.
BO15209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:09 Download gff for
BO15209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RC | 1..927 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:45 Download gff for
BO15209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RC | 147..1082 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:36 Download gff for
BO15209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RB | 48..971 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:09 Download gff for
BO15209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RC | 147..1082 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:20 Download gff for
BO15209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fb-RB | 48..971 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:20 Download gff for
BO15209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8937551..8937631 | 17..97 | 100 | -> | Plus |
2L | 8938569..8938757 | 98..286 | 100 | -> | Plus |
2L | 8938857..8939027 | 287..457 | 100 | -> | Plus |
2L | 8939116..8939598 | 458..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:36 Download gff for
BO15209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8937551..8937631 | 17..97 | 100 | -> | Plus |
arm_2L | 8938569..8938757 | 98..286 | 100 | -> | Plus |
arm_2L | 8938857..8939027 | 287..457 | 100 | -> | Plus |
arm_2L | 8939116..8939598 | 458..942 | 99 | | Plus |
BO15209.pep Sequence
Translation from 16 to 958
> BO15209.pep
MSNRELQLNSGMKCAKYMLIIVSFMFALTAILLIMVGTTIQTIFGDFSLF
IDGHFSSPPALLIAIGFILIAVAALGAYGAVKESVMVINLYGVCLFLVFI
LEVSAAIAAFVMQSQVRGMLIRTMNQALAEYEHDPYVESGVDFMQSMLEC
CGVNEPEDWKDYLSANVNFTLGVDDVVVPNSCCGNQPTSLNDSTQMTCME
TYDYGCFRKMNFIVSQSAMLIATGATTVAFVQLLGVLCAFMLAKTLRRNK
SIREARRWQLQQSLGVLISGGKMAPPQNSAVTGYQQLDNGEQGSHEPYTY
TPQSPSVNASFLDH
BO15209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fb-PC | 308 | CG9496-PC | 1..308 | 1..308 | 1579 | 100 | Plus |
Tsp29Fb-PA | 308 | CG9496-PA | 1..308 | 1..308 | 1579 | 100 | Plus |
Tsp29Fb-PB | 308 | CG9496-PB | 1..308 | 1..308 | 1579 | 100 | Plus |
Tsp47F-PB | 239 | CG9033-PB | 5..238 | 11..251 | 324 | 29.3 | Plus |
Tsp39D-PB | 235 | CG8666-PB | 3..231 | 9..249 | 300 | 26.1 | Plus |