Clone BO15209 Report

Search the DGRC for BO15209

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:152
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptTsp29Fb-RA
Protein status:BO15209.pep: validated full length
Sequenced Size:958

Clone Sequence Records

BO15209.5prime Sequence

827 bp (796 high quality bases) assembled on 2006-06-16

> BO15209.5prime
GAAGTTATCAGTCGACATGTCGAATAGGGAACTGCAACTGAATTCGGGCA
TGAAGTGCGCCAAGTACATGCTCATCATCGTGAGCTTCATGTTTGCGCTG
ACCGCCATCCTCCTGATTATGGTTGGAACTACGATCCAGACCATCTTCGG
CGACTTCAGCCTCTTCATCGATGGACACTTCTCGTCGCCACCGGCACTCC
TCATTGCCATCGGATTCATTCTGATCGCAGTGGCCGCACTGGGGGCCTAT
GGAGCCGTCAAGGAGAGTGTGATGGTCATTAATCTGTACGGAGTGTGCCT
TTTCCTGGTGTTCATCCTCGAGGTTTCTGCCGCCATCGCCGCCTTTGTGA
TGCAATCGCAGGTGAGGGGCATGCTGATCCGAACCATGAACCAGGCCCTG
GCTGAGTATGAACACGATCCCTACGTGGAATCTGGAGTGGACTTCATGCA
ATCTATGCTAGAGTGTTGCGGAGTTAATGAGCCGGAGGACTGGAAGGACT
ACCTATCCGCCAATGTGAACTTCACTCTGGGAGTGGATGACGTGGTGGTG
CCCAACTCATGCTGCGGCAACCAACCAACAAGTCTGAACGACTCCACCCA
GATGACCTGTATGGAGACCTACGACTACGGCTGCTTCCGCAAGATGAACT
TCATTGTGTCGCAGAGCGCCATGCTGATTGCCACCGGAGCCACCACTGTG
GCCTTTGTCCAGCTTCTCGGCGTGCTCTGCGCCTTTATGCTGGCCAAGAC
GCTGCGCCGCAACAAGTCCATCCGCGAGGCACGCCGCTGGCAGCTGCAGC
AGAGCCTCGGCGTCCTCATCTCCGGCG

BO15209.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9496-PB 927 Tsp29Fb-RB 1..811 17..827 4055 100 Plus
CG9496-PA 927 Tsp29Fb-RA 1..811 17..827 4055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fb-RC 1230 CG9496-RC 162..972 17..827 4055 100 Plus
Tsp29Fb-RA 1159 CG9496-RA 91..901 17..827 4055 100 Plus
Tsp29Fb-RB 1116 CG9496-RB 48..858 17..827 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8939115..8939485 457..827 1855 100 Plus
2L 23513712 2L 8938568..8938757 97..286 950 100 Plus
2L 23513712 2L 8938856..8939027 286..457 860 100 Plus
2L 23513712 2L 8937551..8937635 17..101 410 98.8 Plus
Blast to na_te.dros performed on 2015-02-10 20:32:07 has no hits.

BO15209.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:36 Download gff for BO15209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9496-PB 1..811 17..827 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:21 Download gff for BO15209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9496-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:28 Download gff for BO15209.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 41..858 9..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:46:45 Download gff for BO15209.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 41..858 9..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:46:45 Download gff for BO15209.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8937544..8937631 9..97 96 -> Plus
2L 8938569..8938757 98..286 100 -> Plus
2L 8938857..8939027 287..457 100 -> Plus
2L 8939116..8939485 458..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:28 Download gff for BO15209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8937544..8937631 9..97 96 -> Plus
arm_2L 8938569..8938757 98..286 100 -> Plus
arm_2L 8938857..8939027 287..457 100 -> Plus
arm_2L 8939116..8939485 458..827 100   Plus

BO15209.complete Sequence

958 bp (958 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633385

> BO15209.complete
GAAGTTATCAGTCGACATGTCGAATAGGGAACTGCAACTGAATTCGGGCA
TGAAGTGCGCCAAGTACATGCTCATCATCGTGAGCTTCATGTTTGCGCTG
ACCGCCATCCTCCTGATTATGGTTGGAACTACGATCCAGACCATCTTCGG
CGACTTCAGCCTCTTCATCGATGGACACTTCTCGTCGCCACCGGCACTCC
TCATTGCCATCGGATTCATTCTGATCGCAGTGGCCGCACTGGGGGCCTAT
GGAGCCGTCAAGGAGAGTGTGATGGTCATTAATCTGTACGGAGTGTGCCT
TTTCCTGGTGTTCATCCTCGAGGTTTCTGCCGCCATCGCCGCCTTTGTGA
TGCAATCGCAGGTGAGGGGCATGCTGATCCGAACCATGAACCAGGCCCTG
GCTGAGTATGAACACGATCCCTACGTGGAATCTGGAGTGGACTTCATGCA
ATCTATGCTAGAGTGTTGCGGAGTTAATGAGCCGGAGGACTGGAAGGACT
ACCTATCCGCCAATGTGAACTTCACTCTGGGAGTGGATGACGTGGTGGTG
CCCAACTCATGCTGCGGCAACCAACCAACAAGTCTGAACGACTCCACCCA
GATGACCTGTATGGAGACCTACGACTACGGCTGCTTCCGCAAGATGAACT
TCATTGTGTCGCAGAGCGCCATGCTGATTGCCACCGGAGCCACCACTGTG
GCCTTTGTCCAGCTTCTCGGCGTGCTCTGCGCCTTTATGCTGGCCAAGAC
GCTGCGCCGCAACAAGTCCATCCGCGAGGCACGCCGCTGGCAGCTGCAGC
AGAGCCTCGGCGTCCTCATCTCCGGCGGAAAGATGGCACCGCCCCAGAAT
TCCGCTGTCACCGGCTATCAGCAGTTGGATAACGGAGAGCAGGGCTCCCA
CGAACCCTACACCTACACGCCCCAGAGCCCCAGCGTTAACGCAAGCTTTC
TAGACCAT

BO15209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fb-RC 927 CG9496-PC 1..924 17..940 4620 100 Plus
Tsp29Fb-RA 927 CG9496-PA 1..924 17..940 4620 100 Plus
Tsp29Fb-RB 927 CG9496-PB 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fb-RC 1230 CG9496-RC 162..1085 17..940 4620 100 Plus
Tsp29Fb-RA 1159 CG9496-RA 91..1014 17..940 4620 100 Plus
Tsp29Fb-RB 1116 CG9496-RB 48..971 17..940 4620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8939115..8939598 457..940 2420 100 Plus
2L 23513712 2L 8938568..8938757 97..286 950 100 Plus
2L 23513712 2L 8938856..8939027 286..457 860 100 Plus
2L 23513712 2L 8937551..8937635 17..101 410 98.8 Plus
Blast to na_te.dros performed on 2014-11-26 14:59:50 has no hits.

BO15209.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:09 Download gff for BO15209.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RC 1..927 17..944 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:45 Download gff for BO15209.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RC 147..1082 9..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:36 Download gff for BO15209.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 48..971 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:09 Download gff for BO15209.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RC 147..1082 9..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:20 Download gff for BO15209.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fb-RB 48..971 17..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:20 Download gff for BO15209.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8937551..8937631 17..97 100 -> Plus
2L 8938569..8938757 98..286 100 -> Plus
2L 8938857..8939027 287..457 100 -> Plus
2L 8939116..8939598 458..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:36 Download gff for BO15209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8937551..8937631 17..97 100 -> Plus
arm_2L 8938569..8938757 98..286 100 -> Plus
arm_2L 8938857..8939027 287..457 100 -> Plus
arm_2L 8939116..8939598 458..942 99   Plus

BO15209.pep Sequence

Translation from 16 to 958

> BO15209.pep
MSNRELQLNSGMKCAKYMLIIVSFMFALTAILLIMVGTTIQTIFGDFSLF
IDGHFSSPPALLIAIGFILIAVAALGAYGAVKESVMVINLYGVCLFLVFI
LEVSAAIAAFVMQSQVRGMLIRTMNQALAEYEHDPYVESGVDFMQSMLEC
CGVNEPEDWKDYLSANVNFTLGVDDVVVPNSCCGNQPTSLNDSTQMTCME
TYDYGCFRKMNFIVSQSAMLIATGATTVAFVQLLGVLCAFMLAKTLRRNK
SIREARRWQLQQSLGVLISGGKMAPPQNSAVTGYQQLDNGEQGSHEPYTY
TPQSPSVNASFLDH

BO15209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fb-PC 308 CG9496-PC 1..308 1..308 1579 100 Plus
Tsp29Fb-PA 308 CG9496-PA 1..308 1..308 1579 100 Plus
Tsp29Fb-PB 308 CG9496-PB 1..308 1..308 1579 100 Plus
Tsp47F-PB 239 CG9033-PB 5..238 11..251 324 29.3 Plus
Tsp39D-PB 235 CG8666-PB 3..231 9..249 300 26.1 Plus