Clone Sequence Records
BO15217.3prime Sequence
686 bp (685 high quality bases) assembled on 2006-06-16
> BO15217.3prime
ATGGTCTAGAAAGCTTGCCTCCTCATCCTTGATGCAGTTCTCGACCAAAT
CCCTCAGATTGGGGTTCTCCATGGCCGCAGCGATGCGCTCCTTGTCATTG
ATTTGCTTGTTAATCTCTTCCTCGGTTTGATGCGCTCCCTTCTTGATGTA
TATGTCTAGCTTTATGTTGTGCGGAAGTCCGCGTTCTACTTTCACGCGTA
TACAGAGTCCAATAAGCGTGGCCAACGAGCAATGTGGCACTGTGGGGTTA
AACTCGATGCGAACAACTGAGACATTGGAGCGCGTGGGCGGCATCACAAA
GATTCCATCCTCGTAGACAACGTTGAGGTCCTCCAAAGTGCACGGCTTCT
CGGGATCGCGAATGCCGCGCAACAGATCGTAGATGGTTTCCTGCAGTTCC
GTCTGATTCTTGTAGCCCAGTTCATGGAGCAGTGCGTCCTCCCCGAAGGC
AATGGCCTCATCATCCATCGACATCTGGCTCGTTTTGCGCACTAACTCGT
CGGCGTTCTGGCTGCGTCCGCTGATACTGGCGCTGCTGCTGCCCGTACCG
CTTTCACTGCTGCCCGTTCCGCCCGCTCTCCCACTATCGCCGCCGCACGA
CGACGTCACAGTTGCGACCGAACTGACGCCGCTGTCGGATTCGGAGAGCT
TGCGCTTTATGTAGGACAGCATGTCGACTGATAACT
BO15217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30152-PA | 657 | CG30152-RA | 1..654 | 672..19 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30152-RC | 1473 | CG30152-RC | 698..1353 | 674..19 | 3280 | 100 | Minus |
CG30152-RB | 1895 | CG30152-RB | 179..834 | 674..19 | 3280 | 100 | Minus |
CG30152-RA | 954 | CG30152-RA | 179..834 | 674..19 | 3280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20671382..20671678 | 674..378 | 1485 | 100 | Minus |
2R | 25286936 | 2R | 20672119..20672273 | 264..110 | 760 | 99.4 | Minus |
2R | 25286936 | 2R | 20671745..20671860 | 378..263 | 580 | 100 | Minus |
2R | 25286936 | 2R | 20672340..20672434 | 113..19 | 475 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 660..724 | 501..564 | 151 | 72.3 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..693 | 520..582 | 125 | 70.3 | Plus |
BO15217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:43 Download gff for
BO15217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-PA | 1..657 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:27 Download gff for
BO15217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-PA | 1..657 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:34 Download gff for
BO15217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 175..843 | 8..680 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:01 Download gff for
BO15217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 175..843 | 8..680 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:01 Download gff for
BO15217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20671746..20671858 | 265..377 | 100 | -> | Minus |
2R | 20672119..20672269 | 114..264 | 100 | -> | Minus |
2R | 20672340..20672443 | 8..113 | 96 | | Minus |
2R | 20671378..20671678 | 378..680 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:34 Download gff for
BO15217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16558883..16559183 | 378..680 | 99 | -> | Minus |
arm_2R | 16559251..16559363 | 265..377 | 100 | -> | Minus |
arm_2R | 16559624..16559774 | 114..264 | 100 | -> | Minus |
arm_2R | 16559845..16559948 | 8..113 | 96 | | Minus |
BO15217.5prime Sequence
686 bp (685 high quality bases) assembled on 2006-06-16
> BO15217.5prime
GAAGTTATCAGTCGACATGCTGTCCTACATAAAGCGCAAGCTCTCCGAAT
CCGACAGCGGCGTCAGTTCGGTCGCAACTGTGACGTCGTCGTGCGGCGGC
GATAGTGGGAGAGCGGGCGGAACGGGCAGCAGTGAAAGCGGTACGGGCAG
CAGCAGCGCCAGTATCAGCGGACGCAGCCAGAACGCCGACGAGTTAGTGC
GCAAAACGAGCCAGATGTCGATGGATGATGAGGCCATTGCCTTCGGGGAG
GACGCACTGCTCCATGAACTGGGCTACAAGAATCAGACGGAACTGCAGGA
AACCATCTACGATCTGTTGCGCGGCATTCGCGATCCCGAGAAGCCGTGCA
CTTTGGAGGACCTCAACGTTGTCTACGAGGATGGAATCTTTGTGATGCCG
CCCACGCGCTCCAATGTCTCAGTTGTTCGCATCGAGTTTAACCCCACAGT
GCCACATTGCTCGTTGGCCACGCTTATTGGACTCTGTATACGCGTGAAAG
TAGAACGCGGACTTCCGCACAACATAAAGCTAGACATATACATCAAGAAG
GGAGCGCATCAAACCGAGGAAGAGATTAACAAGCAAATCAATGACAAGGA
GCGCATCGCTGCGGCCATGGAGAACCCCAATCTGAGGGATTTGGTCGAGA
ACTGCATCAAGGATGAGGAGGCAAGCTTTCTAGACC
BO15217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30152-PA | 657 | CG30152-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30152-RC | 1473 | CG30152-RC | 698..1353 | 15..670 | 3280 | 100 | Plus |
CG30152-RB | 1895 | CG30152-RB | 179..834 | 15..670 | 3280 | 100 | Plus |
CG30152-RA | 954 | CG30152-RA | 179..834 | 15..670 | 3280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20671382..20671678 | 15..311 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 20672119..20672273 | 425..579 | 760 | 99.4 | Plus |
2R | 25286936 | 2R | 20671745..20671860 | 311..426 | 580 | 100 | Plus |
2R | 25286936 | 2R | 20672340..20672434 | 576..670 | 475 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 660..724 | 188..125 | 151 | 72.3 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..693 | 169..107 | 125 | 70.3 | Minus |
BO15217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:44 Download gff for
BO15217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-PA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:28 Download gff for
BO15217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-PA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:02:10 Download gff for
BO15217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 175..843 | 9..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:04 Download gff for
BO15217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 175..843 | 9..681 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:04 Download gff for
BO15217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20671378..20671678 | 9..311 | 99 | -> | Plus |
2R | 20671746..20671858 | 312..424 | 100 | -> | Plus |
2R | 20672119..20672269 | 425..575 | 100 | -> | Plus |
2R | 20672340..20672443 | 576..681 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:02:10 Download gff for
BO15217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16558883..16559183 | 9..311 | 99 | -> | Plus |
arm_2R | 16559251..16559363 | 312..424 | 100 | -> | Plus |
arm_2R | 16559624..16559774 | 425..575 | 100 | -> | Plus |
arm_2R | 16559845..16559948 | 576..681 | 96 | | Plus |
BO15217.complete Sequence
688 bp (688 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633386
> BO15217.complete
GAAGTTATCAGTCGACATGCTGTCCTACATAAAGCGCAAGCTCTCCGAAT
CCGACAGCGGCGTCAGTTCGGTCGCAACTGTGACGTCGTCGTGCGGCGGC
GATAGTGGGAGAGCGGGCGGAACGGGCAGCAGTGAAAGCGGTACGGGCAG
CAGCAGCGCCAGTATCAGCGGACGCAGCCAGAACGCCGACGAGTTAGTGC
GCAAAACGAGCCAGATGTCGATGGATGATGAGGCCATTGCCTTCGGGGAG
GACGCACTGCTCCATGAACTGGGCTACAAGAATCAGACGGAACTGCAGGA
AACCATCTACGATCTGTTGCGCGGCATTCGCGATCCCGAGAAGCCGTGCA
CTTTGGAGGACCTCAACGTTGTCTACGAGGATGGAATCTTTGTGATGCCG
CCCACGCGCTCCAATGTCTCAGTTGTTCGCATCGAGTTTAACCCCACAGT
GCCACATTGCTCGTTGGCCACGCTTATTGGACTCTGTATACGCGTGAAAG
TAGAACGCGGACTTCCGCACAACATAAAGCTAGACATATACATCAAGAAG
GGAGCGCATCAAACCGAGGAAGAGATTAACAAGCAAATCAATGACAAGGA
GCGCATCGCTGCGGCCATGGAGAACCCCAATCTGAGGGATTTGGTCGAGA
ACTGCATCAAGGATGAGGAGGCAAGCTTTCTAGACCAT
BO15217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30152-RC | 657 | CG30152-PC | 1..654 | 17..670 | 3270 | 100 | Plus |
CG30152-RB | 657 | CG30152-PB | 1..654 | 17..670 | 3270 | 100 | Plus |
CG30152-RA | 657 | CG30152-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30152-RC | 1473 | CG30152-RC | 698..1353 | 15..670 | 3280 | 100 | Plus |
CG30152-RB | 1895 | CG30152-RB | 179..834 | 15..670 | 3280 | 100 | Plus |
CG30152-RA | 954 | CG30152-RA | 179..834 | 15..670 | 3280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20671382..20671678 | 15..311 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 20672119..20672273 | 425..579 | 760 | 99.4 | Plus |
2R | 25286936 | 2R | 20671745..20671860 | 311..426 | 580 | 100 | Plus |
2R | 25286936 | 2R | 20672340..20672434 | 576..670 | 475 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:04:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 660..724 | 188..125 | 151 | 72.3 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..693 | 169..107 | 125 | 70.3 | Minus |
BO15217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:43 Download gff for
BO15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:27 Download gff for
BO15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 176..844 | 9..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:02 Download gff for
BO15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 181..834 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:43 Download gff for
BO15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 176..844 | 9..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:38 Download gff for
BO15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30152-RA | 181..834 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:38 Download gff for
BO15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20671746..20671858 | 312..424 | 100 | -> | Plus |
2R | 20672119..20672269 | 425..575 | 100 | -> | Plus |
2R | 20672340..20672434 | 576..672 | 97 | | Plus |
2R | 20671384..20671678 | 17..311 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:02 Download gff for
BO15217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16558889..16559183 | 17..311 | 100 | -> | Plus |
arm_2R | 16559251..16559363 | 312..424 | 100 | -> | Plus |
arm_2R | 16559624..16559774 | 425..575 | 100 | -> | Plus |
arm_2R | 16559845..16559939 | 576..672 | 97 | | Plus |
BO15217.pep Sequence
Translation from 16 to 688
> BO15217.pep
MLSYIKRKLSESDSGVSSVATVTSSCGGDSGRAGGTGSSESGTGSSSASI
SGRSQNADELVRKTSQMSMDDEAIAFGEDALLHELGYKNQTELQETIYDL
LRGIRDPEKPCTLEDLNVVYEDGIFVMPPTRSNVSVVRIEFNPTVPHCSL
ATLIGLCIRVKVERGLPHNIKLDIYIKKGAHQTEEEINKQINDKERIAAA
MENPNLRDLVENCIKDEEASFLDH
BO15217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30152-PC | 218 | CG30152-PC | 1..218 | 1..218 | 1110 | 100 | Plus |
CG30152-PB | 218 | CG30152-PB | 1..218 | 1..218 | 1110 | 100 | Plus |
CG30152-PA | 218 | CG30152-PA | 1..218 | 1..218 | 1110 | 100 | Plus |
CG30152-PD | 152 | CG30152-PD | 1..152 | 67..218 | 792 | 100 | Plus |
CG7949-PA | 156 | CG7949-PA | 39..152 | 97..214 | 301 | 51.7 | Plus |