Clone Sequence Records
BO15222.3prime Sequence
827 bp (825 high quality bases) assembled on 2006-06-16
> BO15222.3prime
ATGGTCTAGAAAGCTTGCGCATGGTCCGCAAGGACCGAAGCCACAAGGGC
CAGGTCCGCAGGGTCCACACGGTCCGCATGGACCACAGCCTGGTCCGAAG
GGTCCGCAGGGTCCACAGGGTCCGCAAGGACCGCATCCTGGTCCCCAAGG
TCCGCAGGGTCCGCAAGGTCCGCATCCGGGTCCACAGGGTCCACATGGTC
CGCATCTGCCCTCAGCCACTGGGTATTGGTTTGTGGAGAAGCAGGGCAGC
GGACAGCAGGGTCCTCCAGGAGCACATGGTCCAATGGGGCAGGGTGGGCA
CGCTGCACTGGGCTTGTAGTTGATGGGTCCATTTGGATAGCAGCAGTACT
CCCTCGGCGGCGGAATGTCGATGGTTTGGGGCTTCGGCTGGCAGAGGATC
GACTGACACACCTCACGTGGTTCGCAGACGCGCTTGGGATAGCACACCAC
ATAGGGGTCGGGGATCATCGAGGGGTAGTAGATTACTCTGGGTTCTCGCA
CCATCTGCGACACCCAAATCAGCTTGGGCACCTTGATCACCCGCGTGGCA
TCAACGACCTTTGGAATGGTGATCTGCCTGCATCGGTTAACCACCATTGG
CTCCGGCACAATCTTCTCCGTGAACACAACGCGTTTCTTGCAGATCATGC
GTGGTGGTTGCTGCACGGTGATGCATTTGGGGAAGGGTGGTGGAATACGT
GGAGCACATTGTGGCAAGGCCTCCAATTGGGCGGCATTGTAGCACTTGGG
TGAGCACTCGAAGGGACCGCAGCAGGGATCGCATGGACTACAAGGACCGC
ACGGAGAGCACATGTCGACTGATAACT
BO15222.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18396-PA | 798 | Mst98Cb-RA | 1..795 | 813..19 | 3975 | 100 | Minus |
CG11719-PA | 1005 | Mst98Ca-RA | 1..587 | 813..227 | 2635 | 97.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst98Cb-RA | 1066 | CG18396-RA | 118..912 | 813..19 | 3975 | 100 | Minus |
Mst98Ca-RA | 1319 | CG11719-RA | 120..774 | 815..161 | 2900 | 96.2 | Minus |
Mst98Cb-RA | 1066 | CG18396-RA | 757..830 | 126..53 | 235 | 87.8 | Minus |
Mst98Cb-RA | 1066 | CG18396-RA | 805..878 | 174..101 | 235 | 87.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28292915..28293709 | 813..19 | 3975 | 100 | Minus |
3R | 32079331 | 3R | 28291457..28292111 | 815..161 | 2900 | 96.2 | Minus |
3R | 32079331 | 3R | 28293554..28293627 | 126..53 | 235 | 87.8 | Minus |
3R | 32079331 | 3R | 28293602..28293675 | 174..101 | 235 | 87.8 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:41:09 has no hits.
BO15222.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:48 Download gff for
BO15222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18396-PA | 1..798 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:34 Download gff for
BO15222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18396-PA | 1..798 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:01:01 Download gff for
BO15222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst98Cb-RA | 118..918 | 12..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:14:02 Download gff for
BO15222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst98Cb-RA | 118..918 | 12..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:14:02 Download gff for
BO15222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28292915..28293715 | 12..813 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:01:01 Download gff for
BO15222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24118637..24119437 | 12..813 | 99 | | Minus |
BO15222.5prime Sequence
827 bp (821 high quality bases) assembled on 2006-06-16
> BO15222.5prime
GAAGTTATCAGTCGACATGTGCTCTCCGTGCGGTCCTTGTAGTCCATGCG
ATCCCTGCTGCGGTCCCTTCGAGTGCTCACCCAAGTGCTACAATGCCGCC
CAATTGGAGGCCTTGCCACAATGTGCTCCACGTATTCCACCACCCTTCCC
CAAATGCATCACCGTGCAGCAACCACCACGCATGATCTGCAAGAAACGCG
TTGTGTTCACGGAGAAGATTGTGCCGGAGCCAATGGTGGTTAACCGATGC
AGGCAGATCACCATTCCAAAGGTCGTTGATGCCACGCGGGTGATCAAGGT
GCCCAAGCTGATTTGGGTGTCGCAGATGGTGCGAGAACCCAGAGTAATCT
ACTACCCCTCGATGATCCCCGACCCCTATGTGGTGTGCTATCCCAAGCGC
GTCTGCGAACCACGTGAGGTGTGTCAGTCGATCCTCTGCCAGCCGAAGCC
CCAAACCATCGACATTCCGCCGCCGAGGGAGTACTGCTGCTATCCAAATG
GACCCATCAACTACAAGCCCAGTGCAGCGTGCCCACCCTGCCCCATTGGA
CCATGTGCTCCTGGAGGACCCTGCTGTCCGCTGCCCTGCTTCTCCACAAA
CCAATACCCAGTGGCTGAGGGCAGATGCGGACCATGTGGACCCTGTGGAC
CCGGATGCGGACCTTGCGGACCCTGCGGACCTTGGGGACCAGGATGCGGT
CCTTGCGGACCCTGTGGACCCTGCGGACCCTTCGGACCAGGCTGTGGTCC
ATGCGGACCGTGTGGACCCTGCGGACCTGGCCCTTGTGGCTTCGGTCCTT
GCGGACCATGCGCAAGCTTTCTAGACC
BO15222.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18396-PA | 798 | Mst98Cb-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
CG11719-PA | 1005 | Mst98Ca-RA | 1..587 | 17..603 | 2635 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst98Cb-RA | 1066 | CG18396-RA | 118..912 | 17..811 | 3975 | 100 | Plus |
Mst98Ca-RA | 1319 | CG11719-RA | 120..774 | 15..669 | 2900 | 96.2 | Plus |
Mst98Cb-RA | 1066 | CG18396-RA | 757..830 | 704..777 | 235 | 87.8 | Plus |
Mst98Cb-RA | 1066 | CG18396-RA | 805..878 | 656..729 | 235 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28292915..28293709 | 17..811 | 3975 | 100 | Plus |
3R | 32079331 | 3R | 28291457..28292111 | 15..669 | 2900 | 96.2 | Plus |
3R | 32079331 | 3R | 28293554..28293627 | 704..777 | 235 | 87.8 | Plus |
3R | 32079331 | 3R | 28293602..28293675 | 656..729 | 235 | 87.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:16:39 has no hits.
BO15222.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:49 Download gff for
BO15222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18396-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:35 Download gff for
BO15222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18396-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:45:07 Download gff for
BO15222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst98Cb-RA | 118..918 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:06 Download gff for
BO15222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst98Cb-RA | 118..918 | 17..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:06 Download gff for
BO15222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28292915..28293715 | 17..818 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:45:07 Download gff for
BO15222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24118637..24119437 | 17..818 | 99 | | Plus |
BO15222.complete Sequence
829 bp (829 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633387
> BO15222.complete
GAAGTTATCAGTCGACATGTGCTCTCCGTGCGGTCCTTGTAGTCCATGCG
ATCCCTGCTGCGGTCCCTTCGAGTGCTCACCCAAGTGCTACAATGCCGCC
CAATTGGAGGCCTTGCCACAATGTGCTCCACGTATTCCACCACCCTTCCC
CAAATGCATCACCGTGCAGCAACCACCACGCATGATCTGCAAGAAACGCG
TTGTGTTCACGGAGAAGATTGTGCCGGAGCCAATGGTGGTTAACCGATGC
AGGCAGATCACCATTCCAAAGGTCGTTGATGCCACGCGGGTGATCAAGGT
GCCCAAGCTGATTTGGGTGTCGCAGATGGTGCGAGAACCCAGAGTAATCT
ACTACCCCTCGATGATCCCCGACCCCTATGTGGTGTGCTATCCCAAGCGC
GTCTGCGAACCACGTGAGGTGTGTCAGTCGATCCTCTGCCAGCCGAAGCC
CCAAACCATCGACATTCCGCCGCCGAGGGAGTACTGCTGCTATCCAAATG
GACCCATCAACTACAAGCCCAGTGCAGCGTGCCCACCCTGCCCCATTGGA
CCATGTGCTCCTGGAGGACCCTGCTGTCCGCTGCCCTGCTTCTCCACAAA
CCAATACCCAGTGGCTGAGGGCAGATGCGGACCATGTGGACCCTGTGGAC
CCGGATGCGGACCTTGCGGACCCTGCGGACCTTGGGGACCAGGATGCGGT
CCTTGCGGACCCTGTGGACCCTGCGGACCCTTCGGACCAGGCTGTGGTCC
ATGCGGACCGTGTGGACCCTGCGGACCTGGCCCTTGTGGCTTCGGTCCTT
GCGGACCATGCGCAAGCTTTCTAGACCAT
BO15222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst98Cb-RA | 798 | CG18396-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
Mst98Ca-RA | 1005 | CG11719-PA | 1..653 | 17..669 | 2890 | 96.2 | Plus |
Mst98Cb-RA | 798 | CG18396-PA | 640..713 | 704..777 | 235 | 87.8 | Plus |
Mst98Cb-RA | 798 | CG18396-PA | 688..761 | 656..729 | 235 | 87.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst98Cb-RA | 1066 | CG18396-RA | 118..912 | 17..811 | 3975 | 100 | Plus |
Mst98Ca-RA | 1319 | CG11719-RA | 120..774 | 15..669 | 2900 | 96.2 | Plus |
Mst98Cb-RA | 1066 | CG18396-RA | 757..830 | 704..777 | 235 | 87.8 | Plus |
Mst98Cb-RA | 1066 | CG18396-RA | 805..878 | 656..729 | 235 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28292915..28293709 | 17..811 | 3975 | 100 | Plus |
3R | 32079331 | 3R | 28291457..28292111 | 15..669 | 2900 | 96.2 | Plus |
3R | 32079331 | 3R | 28293554..28293627 | 704..777 | 235 | 87.8 | Plus |
3R | 32079331 | 3R | 28293602..28293675 | 656..729 | 235 | 87.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:51:01 has no hits.
BO15222.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:14 Download gff for
BO15222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst98Cb-RA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:40 Download gff for
BO15222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst98Cb-RA | 113..913 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:23 Download gff for
BO15222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst98Cb-RA | 118..912 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:14 Download gff for
BO15222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst98Cb-RA | 113..913 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:03 Download gff for
BO15222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst98Cb-RA | 118..912 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:03 Download gff for
BO15222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28292915..28293709 | 17..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:23 Download gff for
BO15222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24118637..24119431 | 17..813 | 99 | | Plus |
BO15222.pep Sequence
Translation from 16 to 829
> BO15222.pep
MCSPCGPCSPCDPCCGPFECSPKCYNAAQLEALPQCAPRIPPPFPKCITV
QQPPRMICKKRVVFTEKIVPEPMVVNRCRQITIPKVVDATRVIKVPKLIW
VSQMVREPRVIYYPSMIPDPYVVCYPKRVCEPREVCQSILCQPKPQTIDI
PPPREYCCYPNGPINYKPSAACPPCPIGPCAPGGPCCPLPCFSTNQYPVA
EGRCGPCGPCGPGCGPCGPCGPWGPGCGPCGPCGPCGPFGPGCGPCGPCG
PCGPGPCGFGPCGPCASFLDH
BO15222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst98Cb-PA | 265 | CG18396-PA | 1..265 | 1..265 | 1629 | 100 | Plus |
Mst98Ca-PA | 334 | CG11719-PA | 1..291 | 1..266 | 1480 | 89 | Plus |
Mst84Db-PA | 74 | CG17934-PA | 7..71 | 202..268 | 275 | 62.2 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 3..56 | 180..252 | 255 | 63.5 | Plus |
Mst84Db-PA | 74 | CG17934-PA | 2..73 | 157..250 | 244 | 50.5 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 3..61 | 207..270 | 233 | 65.7 | Plus |
Mst84Db-PA | 74 | CG17934-PA | 3..61 | 207..265 | 210 | 56.5 | Plus |
Mst87F-PB | 56 | CG17956-PB | 3..55 | 204..262 | 207 | 62.9 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 3..55 | 158..222 | 167 | 51.5 | Plus |