Clone Sequence Records
BO15236.3prime Sequence
819 bp (762 high quality bases) assembled on 2006-06-16
> BO15236.3prime
ATGGTCTAGAAAGCTTGCGATGCACAGATCCTCGTCCGGATCCTCCTCGT
CGAAATCGTCGTCGGCATCGGGCGTGTATATTATGTTTCCCTCAGACGGC
TCGGATGTGCGTTCGTATGGCAGGGTGAGTGCATTGCGGGCCAACACTTC
ATCCTCGTCAAGCTCGATTTTGAAGGTGCTGCTGGCCGGCTCTGTGGTCT
GCTCCGCCTCGGGCGAGGGCTGCTTGGGGGAGGCACCTGCAGGCAGTCCT
CCGTCCAGCGGCGTCACCTTGAACTGGGTTTTGCTGACTTCGCAGGAGTA
GCGCCTGTTGGACACCCCTCCGCCCGGCTTGCGTGATATCAGCGAGAGTA
GTTTGTCCGATTCCAGTCGGAGGACCAGCTCGGCCAGGTACTCGCAGCCA
GCCAGGATGTAGTCGGCATGCGGATCCTGCAGGTGCTGCGGGGAGGCCCA
AAGGAACACCCGACGCACATTGTCCGAGCGGCGTAGGCGGTTGAGGAAGC
CAAATATGAAAGCAGGCGTCTGGTAGCACAGCAGGTCTGCCAATGTTGGC
AGGATGACGTTAAAGCCAGTGGAGTTGGAATCCGTAGTACTCCCAGTGTT
GTTGTTGGCGTACTTGTCGATCAGTGCCTCGAAGGTGGCCACGTGCTTAA
GGCTGACGCCGGTGGGCAGGGCCTTGATGGTATCCGCCCCCTGTCCCTGC
TCGTGCAGCAGACTGCCGATGAACTTGGGGGGCAATGCGCTCCCGATTTA
GCTCATCTATTACGAGGACCACTTTCTGCTTGGTCACCACCAGGTTGGAG
AGCATGTCGACTGATAACT
BO15236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-PA | 789 | CG2034-RA | 74..786 | 731..19 | 3540 | 99.8 | Minus |
CG2034-PA | 789 | CG2034-RA | 1..78 | 805..728 | 390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-RB | 1284 | CG2034-RB | 247..1032 | 805..19 | 3895 | 99.7 | Minus |
CG2034-RA | 1149 | CG2034-RA | 112..897 | 805..19 | 3895 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2257870..2258517 | 758..110 | 3180 | 99.7 | Minus |
3L | 28110227 | 3L | 2258579..2258670 | 110..19 | 460 | 100 | Minus |
3L | 28110227 | 3L | 2257754..2257807 | 805..752 | 255 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:31:16 has no hits.
BO15236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:59 Download gff for
BO15236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-PA | 1..789 | 18..805 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:49 Download gff for
BO15236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-PA | 1..789 | 18..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:49:09 Download gff for
BO15236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 112..903 | 12..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:03:57 Download gff for
BO15236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 112..903 | 12..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:03:57 Download gff for
BO15236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2257754..2257802 | 757..805 | 100 | -> | Minus |
3L | 2257872..2258517 | 110..756 | 99 | -> | Minus |
3L | 2258580..2258676 | 12..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:49:09 Download gff for
BO15236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2258580..2258676 | 12..109 | 96 | | Minus |
arm_3L | 2257754..2257802 | 757..805 | 100 | -> | Minus |
arm_3L | 2257872..2258517 | 110..756 | 99 | -> | Minus |
BO15236.5prime Sequence
796 bp (678 high quality bases) assembled on 2006-06-16
> BO15236.5prime
GAAGTTATCAGTCGACATGCTCTCCAACCTGGTGGTGACCAAGCAGAAAG
TGGTCCTCGTAATAGATGAGCTAAATCGGGAGCGCATTGCCCCCAAGTTC
ATCGGCAGTCTGCTGCACGAGCAGGGACAGGGGGCGGATACCATCAAGGC
CCTGCCCACCGGCGTCAGCCTTAAGCACGTGGCCACCTTCGAGGCACTGA
TCGACAAGTACGCCAACAACAACACTGGGAGTACTACGGATTCCAACTCC
ACTGGCTTTAACGTCATCCTGCCAACATTGGCAGACCTGCTGTGCTACCA
GACGCCTGCTTTCATATTTGGCTTCCTCAACCGCCTACGCCGCTCGGACA
ATGTGCGTCGGGTGTTCCTTTGGGCCTCCCCGCAGCACCTGCAGGATCCG
CATGCCGACTACATCCTGGCTGGCTGCGAGTACCTGGCCGAGCTGGTCCT
CCGACTGGAATCGGACAAACTACTCTCGCTGATATCACGCAAGCCGGGCG
GAGGGGTGTCCAACAGGCGCTACTCCTGCGAAGTCAGCAAAACCCAGTTC
AAGGTGACGCCGCTGGACGGAGGACTGCCTGCAGGTGCCTCCCCCAAGCA
GCCCTCGCCCGAGGCGGAGCAGACCACAGAGCCGGCCAGCAGCACCTTCA
AAATCGAGCTTGACGAGGATGAAGTGTTGGCCCGCAATGCACTCACCCTG
CCATACGAACGCACATCCGAGCCGTCTGAGGGAAACATAATATACACGCC
CGATGCCGACGACGATTTCGACGAGGAGGATCCGGACGAGGATCTG
BO15236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-PA | 789 | CG2034-RA | 1..780 | 17..796 | 3875 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-RB | 1284 | CG2034-RB | 247..1026 | 17..796 | 3885 | 99.9 | Plus |
CG2034-RA | 1149 | CG2034-RA | 112..891 | 17..796 | 3885 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2257870..2258517 | 64..711 | 3225 | 99.8 | Plus |
3L | 28110227 | 3L | 2258579..2258664 | 711..796 | 430 | 100 | Plus |
3L | 28110227 | 3L | 2257754..2257807 | 17..70 | 255 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:57:29 has no hits.
BO15236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:59 Download gff for
BO15236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-PA | 1..780 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:15:44 Download gff for
BO15236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 112..891 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:21:20 Download gff for
BO15236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 112..891 | 17..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:21:20 Download gff for
BO15236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2257754..2257802 | 17..65 | 100 | -> | Plus |
3L | 2257872..2258517 | 66..711 | 99 | -> | Plus |
3L | 2258580..2258664 | 712..796 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:15:44 Download gff for
BO15236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2257754..2257802 | 17..65 | 100 | -> | Plus |
arm_3L | 2257872..2258517 | 66..711 | 99 | -> | Plus |
arm_3L | 2258580..2258664 | 712..796 | 100 | | Plus |
BO15236.complete Sequence
820 bp assembled on 2008-08-15
GenBank Submission: FJ633388
> BO15236.complete
GAAGTTATCAGTCGACATGCTCTCCAACCTGGTGGTGACCAAGCAGAAAG
TGGTCCTCGTAATAGATGAGCTAAATCGGGAGCGCATTGCCCCCAAGTTC
ATCGGCAGTCTGCTGCACGAGCAGGGACAGGGGGCGGATACCATCAAGGC
CCTGCCCACCGGCGTCAGCCTTAAGCACGTGGCCACCTTCGAGGCACTGA
TCGACAAGTACGCCAACAACAACACTGGGAGTACTACGGATTCCAACTCC
ACTGGCTTTAACGTCATCCTGCCAACATTGGCAGACCTGCTGTGCTACCA
GACGCCTGCTTTCATATTTGGCTTCCTCAACCGCCTACGCCGCTCGGACA
ATGTGCGTCGGGTGTTCCTTTGGGCCTCCCCGCAGCACCTGCAGGATCCG
CATGCCGACTACATCCTGGCTGGCTGCGAGTACCTGGCCGAGCTGGTCCT
CCGACTGGAATCGGACAAACTACTCTCGCTGATATCACGCAAGCCGGGCG
GAGGGGTGTCCAACAGGCGCTACTCCTGCGAAGTCAGCAAAACCCAGTTC
AAGGTGACGCCGCTGGACGGAGGACTGCCTGCAGGTGCCTCCCCCAAGCA
GCCCTCGCCCGAGGCGGAGCAGACCACAGAGCCGGCCAGCAGCACCTTCA
AAATCGAGCTTGACGAGGATGAAGTGTTGGCCCGCAATGCACTCACCCTG
CCATACGAACGCACATCCGAGCCGTCTGAGGGAAACATAATATACACGCC
CGATGCCGACGACGATTTCGACGAGGAGGATCCGGACGAGGATCTGTGCA
TCGCAAGCTTTCTAGACCAT
BO15236.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-RB | 789 | CG2034-PB | 1..786 | 17..802 | 3915 | 99.9 | Plus |
CG2034-RA | 789 | CG2034-PA | 1..786 | 17..802 | 3915 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-RB | 1284 | CG2034-RB | 247..1032 | 17..802 | 3915 | 99.9 | Plus |
CG2034-RA | 1149 | CG2034-RA | 112..897 | 17..802 | 3915 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2257870..2258517 | 64..711 | 3225 | 99.8 | Plus |
3L | 28110227 | 3L | 2258579..2258670 | 711..802 | 460 | 100 | Plus |
3L | 28110227 | 3L | 2257754..2257807 | 17..70 | 255 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:28 has no hits.
BO15236.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:53 Download gff for
BO15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 86..877 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:39 Download gff for
BO15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 112..897 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:22 Download gff for
BO15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 86..871 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:23 Download gff for
BO15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2034-RA | 112..897 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:23 Download gff for
BO15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2257754..2257802 | 17..65 | 100 | -> | Plus |
3L | 2257872..2258517 | 66..711 | 99 | -> | Plus |
3L | 2258580..2258670 | 712..804 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:39 Download gff for
BO15236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2257754..2257802 | 17..65 | 100 | -> | Plus |
arm_3L | 2257872..2258517 | 66..711 | 99 | -> | Plus |
arm_3L | 2258580..2258670 | 712..804 | 97 | | Plus |
BO15236.pep Sequence
Translation from 16 to 820
> BO15236.pep
MLSNLVVTKQKVVLVIDELNRERIAPKFIGSLLHEQGQGADTIKALPTGV
SLKHVATFEALIDKYANNNTGSTTDSNSTGFNVILPTLADLLCYQTPAFI
FGFLNRLRRSDNVRRVFLWASPQHLQDPHADYILAGCEYLAELVLRLESD
KLLSLISRKPGGGVSNRRYSCEVSKTQFKVTPLDGGLPAGASPKQPSPEA
EQTTEPASSTFKIELDEDEVLARNALTLPYERTSEPSEGNIIYTPDADDD
FDEEDPDEDLCIASFLDH
BO15236.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2034-PB | 262 | CG2034-PB | 1..262 | 1..262 | 1350 | 100 | Plus |
CG2034-PA | 262 | CG2034-PA | 1..262 | 1..262 | 1350 | 100 | Plus |