Clone BO15236 Report

Search the DGRC for BO15236

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:152
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG2034-RA
Protein status:BO15236.pep: Imported from assembly
Sequenced Size:820

Clone Sequence Records

BO15236.3prime Sequence

819 bp (762 high quality bases) assembled on 2006-06-16

> BO15236.3prime
ATGGTCTAGAAAGCTTGCGATGCACAGATCCTCGTCCGGATCCTCCTCGT
CGAAATCGTCGTCGGCATCGGGCGTGTATATTATGTTTCCCTCAGACGGC
TCGGATGTGCGTTCGTATGGCAGGGTGAGTGCATTGCGGGCCAACACTTC
ATCCTCGTCAAGCTCGATTTTGAAGGTGCTGCTGGCCGGCTCTGTGGTCT
GCTCCGCCTCGGGCGAGGGCTGCTTGGGGGAGGCACCTGCAGGCAGTCCT
CCGTCCAGCGGCGTCACCTTGAACTGGGTTTTGCTGACTTCGCAGGAGTA
GCGCCTGTTGGACACCCCTCCGCCCGGCTTGCGTGATATCAGCGAGAGTA
GTTTGTCCGATTCCAGTCGGAGGACCAGCTCGGCCAGGTACTCGCAGCCA
GCCAGGATGTAGTCGGCATGCGGATCCTGCAGGTGCTGCGGGGAGGCCCA
AAGGAACACCCGACGCACATTGTCCGAGCGGCGTAGGCGGTTGAGGAAGC
CAAATATGAAAGCAGGCGTCTGGTAGCACAGCAGGTCTGCCAATGTTGGC
AGGATGACGTTAAAGCCAGTGGAGTTGGAATCCGTAGTACTCCCAGTGTT
GTTGTTGGCGTACTTGTCGATCAGTGCCTCGAAGGTGGCCACGTGCTTAA
GGCTGACGCCGGTGGGCAGGGCCTTGATGGTATCCGCCCCCTGTCCCTGC
TCGTGCAGCAGACTGCCGATGAACTTGGGGGGCAATGCGCTCCCGATTTA
GCTCATCTATTACGAGGACCACTTTCTGCTTGGTCACCACCAGGTTGGAG
AGCATGTCGACTGATAACT

BO15236.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-PA 789 CG2034-RA 74..786 731..19 3540 99.8 Minus
CG2034-PA 789 CG2034-RA 1..78 805..728 390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-RB 1284 CG2034-RB 247..1032 805..19 3895 99.7 Minus
CG2034-RA 1149 CG2034-RA 112..897 805..19 3895 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2257870..2258517 758..110 3180 99.7 Minus
3L 28110227 3L 2258579..2258670 110..19 460 100 Minus
3L 28110227 3L 2257754..2257807 805..752 255 98.1 Minus
Blast to na_te.dros performed on 2015-02-10 18:31:16 has no hits.

BO15236.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:43:59 Download gff for BO15236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-PA 1..789 18..805 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:49 Download gff for BO15236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-PA 1..789 18..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:49:09 Download gff for BO15236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 112..903 12..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:03:57 Download gff for BO15236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 112..903 12..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:03:57 Download gff for BO15236.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2257754..2257802 757..805 100 -> Minus
3L 2257872..2258517 110..756 99 -> Minus
3L 2258580..2258676 12..109 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:49:09 Download gff for BO15236.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2258580..2258676 12..109 96   Minus
arm_3L 2257754..2257802 757..805 100 -> Minus
arm_3L 2257872..2258517 110..756 99 -> Minus

BO15236.5prime Sequence

796 bp (678 high quality bases) assembled on 2006-06-16

> BO15236.5prime
GAAGTTATCAGTCGACATGCTCTCCAACCTGGTGGTGACCAAGCAGAAAG
TGGTCCTCGTAATAGATGAGCTAAATCGGGAGCGCATTGCCCCCAAGTTC
ATCGGCAGTCTGCTGCACGAGCAGGGACAGGGGGCGGATACCATCAAGGC
CCTGCCCACCGGCGTCAGCCTTAAGCACGTGGCCACCTTCGAGGCACTGA
TCGACAAGTACGCCAACAACAACACTGGGAGTACTACGGATTCCAACTCC
ACTGGCTTTAACGTCATCCTGCCAACATTGGCAGACCTGCTGTGCTACCA
GACGCCTGCTTTCATATTTGGCTTCCTCAACCGCCTACGCCGCTCGGACA
ATGTGCGTCGGGTGTTCCTTTGGGCCTCCCCGCAGCACCTGCAGGATCCG
CATGCCGACTACATCCTGGCTGGCTGCGAGTACCTGGCCGAGCTGGTCCT
CCGACTGGAATCGGACAAACTACTCTCGCTGATATCACGCAAGCCGGGCG
GAGGGGTGTCCAACAGGCGCTACTCCTGCGAAGTCAGCAAAACCCAGTTC
AAGGTGACGCCGCTGGACGGAGGACTGCCTGCAGGTGCCTCCCCCAAGCA
GCCCTCGCCCGAGGCGGAGCAGACCACAGAGCCGGCCAGCAGCACCTTCA
AAATCGAGCTTGACGAGGATGAAGTGTTGGCCCGCAATGCACTCACCCTG
CCATACGAACGCACATCCGAGCCGTCTGAGGGAAACATAATATACACGCC
CGATGCCGACGACGATTTCGACGAGGAGGATCCGGACGAGGATCTG

BO15236.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-PA 789 CG2034-RA 1..780 17..796 3875 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-RB 1284 CG2034-RB 247..1026 17..796 3885 99.9 Plus
CG2034-RA 1149 CG2034-RA 112..891 17..796 3885 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2257870..2258517 64..711 3225 99.8 Plus
3L 28110227 3L 2258579..2258664 711..796 430 100 Plus
3L 28110227 3L 2257754..2257807 17..70 255 98.1 Plus
Blast to na_te.dros performed on 2015-02-11 15:57:29 has no hits.

BO15236.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:59 Download gff for BO15236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-PA 1..780 17..796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:15:44 Download gff for BO15236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 112..891 17..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:21:20 Download gff for BO15236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 112..891 17..796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:21:20 Download gff for BO15236.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2257754..2257802 17..65 100 -> Plus
3L 2257872..2258517 66..711 99 -> Plus
3L 2258580..2258664 712..796 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:15:44 Download gff for BO15236.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2257754..2257802 17..65 100 -> Plus
arm_3L 2257872..2258517 66..711 99 -> Plus
arm_3L 2258580..2258664 712..796 100   Plus

BO15236.complete Sequence

820 bp assembled on 2008-08-15

GenBank Submission: FJ633388

> BO15236.complete
GAAGTTATCAGTCGACATGCTCTCCAACCTGGTGGTGACCAAGCAGAAAG
TGGTCCTCGTAATAGATGAGCTAAATCGGGAGCGCATTGCCCCCAAGTTC
ATCGGCAGTCTGCTGCACGAGCAGGGACAGGGGGCGGATACCATCAAGGC
CCTGCCCACCGGCGTCAGCCTTAAGCACGTGGCCACCTTCGAGGCACTGA
TCGACAAGTACGCCAACAACAACACTGGGAGTACTACGGATTCCAACTCC
ACTGGCTTTAACGTCATCCTGCCAACATTGGCAGACCTGCTGTGCTACCA
GACGCCTGCTTTCATATTTGGCTTCCTCAACCGCCTACGCCGCTCGGACA
ATGTGCGTCGGGTGTTCCTTTGGGCCTCCCCGCAGCACCTGCAGGATCCG
CATGCCGACTACATCCTGGCTGGCTGCGAGTACCTGGCCGAGCTGGTCCT
CCGACTGGAATCGGACAAACTACTCTCGCTGATATCACGCAAGCCGGGCG
GAGGGGTGTCCAACAGGCGCTACTCCTGCGAAGTCAGCAAAACCCAGTTC
AAGGTGACGCCGCTGGACGGAGGACTGCCTGCAGGTGCCTCCCCCAAGCA
GCCCTCGCCCGAGGCGGAGCAGACCACAGAGCCGGCCAGCAGCACCTTCA
AAATCGAGCTTGACGAGGATGAAGTGTTGGCCCGCAATGCACTCACCCTG
CCATACGAACGCACATCCGAGCCGTCTGAGGGAAACATAATATACACGCC
CGATGCCGACGACGATTTCGACGAGGAGGATCCGGACGAGGATCTGTGCA
TCGCAAGCTTTCTAGACCAT

BO15236.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-RB 789 CG2034-PB 1..786 17..802 3915 99.9 Plus
CG2034-RA 789 CG2034-PA 1..786 17..802 3915 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-RB 1284 CG2034-RB 247..1032 17..802 3915 99.9 Plus
CG2034-RA 1149 CG2034-RA 112..897 17..802 3915 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2257870..2258517 64..711 3225 99.8 Plus
3L 28110227 3L 2258579..2258670 711..802 460 100 Plus
3L 28110227 3L 2257754..2257807 17..70 255 98.1 Plus
Blast to na_te.dros performed on 2014-11-27 14:34:28 has no hits.

BO15236.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:53 Download gff for BO15236.complete
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 86..877 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:39 Download gff for BO15236.complete
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 112..897 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:22 Download gff for BO15236.complete
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 86..871 17..804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:23 Download gff for BO15236.complete
Subject Subject Range Query Range Percent Splice Strand
CG2034-RA 112..897 17..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:23 Download gff for BO15236.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2257754..2257802 17..65 100 -> Plus
3L 2257872..2258517 66..711 99 -> Plus
3L 2258580..2258670 712..804 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:39 Download gff for BO15236.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2257754..2257802 17..65 100 -> Plus
arm_3L 2257872..2258517 66..711 99 -> Plus
arm_3L 2258580..2258670 712..804 97   Plus

BO15236.pep Sequence

Translation from 16 to 820

> BO15236.pep
MLSNLVVTKQKVVLVIDELNRERIAPKFIGSLLHEQGQGADTIKALPTGV
SLKHVATFEALIDKYANNNTGSTTDSNSTGFNVILPTLADLLCYQTPAFI
FGFLNRLRRSDNVRRVFLWASPQHLQDPHADYILAGCEYLAELVLRLESD
KLLSLISRKPGGGVSNRRYSCEVSKTQFKVTPLDGGLPAGASPKQPSPEA
EQTTEPASSTFKIELDEDEVLARNALTLPYERTSEPSEGNIIYTPDADDD
FDEEDPDEDLCIASFLDH

BO15236.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2034-PB 262 CG2034-PB 1..262 1..262 1350 100 Plus
CG2034-PA 262 CG2034-PA 1..262 1..262 1350 100 Plus