Clone Sequence Records
BO15241.3prime Sequence
954 bp (882 high quality bases) assembled on 2006-06-16
> BO15241.3prime
ATGGTCTAGAAAGCTTGCGGCAGCCTTAACGAAGGCGCCAGCGAAGAGGA
TGTTCTTCTTATTCCAGATGACGTAGAGGAAGGGCCGGTCCGCCTGGAAC
TGCAGCGGGAAGGTCATCATGCGGGTCATCATGATCATGCCGGTGGCAGC
CGCCGCCTCCGTGCCCTCCTCATTCACCTCGATGGTGGCCTTGTGCAGCA
CCTTGGACACAAAGACGCCCTCGGGGGATTCCAGCAGATTGCTAAACTCA
GCTTGGTCCGTAAACATTTTCGTGATGCCCAGCTGCTTCAGTTTCTCGGC
CAATTCCAGGGAGTAGTCCACCTTAAACTTGGGGAACTTGACATGGACCT
CTTCCACGGTCAACTTGTCGGCCAAATCCACCAGGTTCACAGTCTTGAGC
TTCTCGGCTAGGGCGTAAATACCTGTCCGCTCCTGCGGCAGCAGCACGAA
CATGGAGAGGTCAGAGTCCTGGTAGGGCATCTCCAGGGCAGTGCAGCCCA
GATCTTCGAAGAAGCCATAGTTGAACTTGGCCTTCTGGTTCATGTAGTTG
ATTTTAACTTGCTCCTCCTCGCCCACCCAGAAGATATCCTCCTCGGTGCG
CTCCTCGCTGAACTTGTGCGCCCAGCTGCCCTTGAAGTGGAGGGCATTGA
GCAGGACCAGCCTGGTGTTGTCCGAGAACGAGTCCGCGCTGACCAGCTCC
GTAATCTTGCCCTGAGTCTTGGCATTCACCCAGGCATTGATGGCCTGNGC
GGCGGCATCGTTGAGCGCAAAGTTAATGGACTCCGCCTCCGAATGATACT
GCTCCTTGATGGCCGACTGGTAGGCGGGCTTCAGCTGCTTGCCCTCCTGC
ACGTACAGCTTGTTGGCAACGCGCAGCAGGTTACTGTTGCGGTACTTCTC
CAGCACAAACTGGAACGTTTGGGGCACCTTCCGGCGGAAAGTTGGAGACG
AAGT
BO15241.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10913-PA | 1125 | Spn6-RA | 212..1122 | 929..19 | 4486 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn55B-RA | 1297 | CG10913-RA | 281..1215 | 954..19 | 4614 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18126627..18127297 | 954..283 | 3269 | 99.4 | Minus |
| 2R | 25286936 | 2R | 18127862..18128128 | 285..19 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:18:06 has no hits.
BO15241.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:02 Download gff for
BO15241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn6-PA | 188..1125 | 15..954 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:54 Download gff for
BO15241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10913-PA | 188..1125 | 15..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:44:55 Download gff for
BO15241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn55B-RA | 281..1218 | 15..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:13 Download gff for
BO15241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn55B-RA | 281..1218 | 15..954 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:13 Download gff for
BO15241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18126627..18127297 | 283..954 | 99 | -> | Minus |
| 2R | 18127865..18128131 | 15..282 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:44:55 Download gff for
BO15241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14014132..14014802 | 283..954 | 99 | -> | Minus |
| arm_2R | 14015370..14015636 | 15..282 | 99 | | Minus |
BO15241.5prime Sequence
860 bp (800 high quality bases) assembled on 2006-06-16
> BO15241.5prime
GAAGTTATCAGTCGACATGTTCGATTTCAATTTGGAATTTGCGCGTGGAG
GTGCCCGTTTCACCAGCGAACTTTTTCAGCTTTTGAGCGCTGGCGGGCTC
AAGGAGAACGTCGTCTTCTCGCCCTTCTCCATCCAAACTTGCATTGCCCT
GGCCTTTGCCGGATCGCAGGGTGAAACCGCCGACGAGATCGCCAAGGCAC
TGCACTTCGTCTCCAACTTTCCGCCGGAGGTGGCCCAAACGTTCCAGTTT
GTGCTGGAGAAGTACCGCAACAGTAACCTGCTGCGCGTTGCCAACAAGCT
GTACGTGCAGGAGGGCAAGCAGCTGAAGCCCGCCTACCAGTCGGCCATCA
AGGAGCAGTATCATTCGGAGGCGGAGTCCATTAACTTTGCGCTCAACGAT
GCCGCCGCCCAGGCCATCAATGCCTGGGTGAATGCCAAGACTCAGGGCAA
GATTACGGAGCTGGTCAGCGCGGACTCGTTCTCGGACAACACCAGGCTGG
TCCTGCTCAATGCCCTCCACTTCAAGGGCAGCTGGGCGCACAAGTTCAGC
GAGGAGCGCACCGAGGAGGATATCTTCTGGGTGGGCGAGGAGGAGCAAGT
TAAAATCAACTACATGAACCAGAAGGCCAAGTTCAACTATGGCTTCTTCG
AAGATCTGGGCTGCACTGCCCTGGAGATGCCCTACCAGGACTCTGACCTC
TCCATGTTCGTGCTGCTGCCGCAGGAGCGGACAGGTATTTACGCCCTAGC
CGAGAAGCTCAAGACTGTGAACCTGGTGGATTTGGCCGACAAGTTGACCG
TGGAAGAGGTCCATGTCAAGTTCCCCAAGTTTAAGGTGGACTACTCCCTG
GAATTGCCCG
BO15241.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10913-PA | 1125 | Spn6-RA | 1..840 | 17..856 | 4175 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn55B-RA | 1297 | CG10913-RA | 94..937 | 17..860 | 4190 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18126440..18127283 | 17..860 | 4190 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:53:09 has no hits.
BO15241.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:03 Download gff for
BO15241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn6-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:56 Download gff for
BO15241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10913-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:51:43 Download gff for
BO15241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn55B-RA | 78..937 | 3..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:47 Download gff for
BO15241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn55B-RA | 78..937 | 3..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:47 Download gff for
BO15241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18126424..18127283 | 3..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:51:43 Download gff for
BO15241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14013929..14014788 | 3..860 | 99 | | Plus |
BO15241.complete Sequence
1156 bp (1156 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633389
> BO15241.complete
GAAGTTATCAGTCGACATGTTCGATTTCAATTTGGAATTTGCGCGTGGAG
GTGCCCGTTTCACCAGCGAACTTTTTCAGCTTTTGAGCGCTGGCGGGCTC
AAGGAGAACGTCGTCTTCTCGCCCTTCTCCATCCAAACTTGCATTGCCCT
GGCCTTTGCCGGATCGCAGGGTGAAACCGCCGACGAGATCGCCAAGGCAC
TGCACTTCGTCTCCAACTTTCCGCCGGAGGTGGCCCAAACGTTCCAGTTT
GTGCTGGAGAAGTACCGCAACAGTAACCTGCTGCGCGTTGCCAACAAGCT
GTACGTGCAGGAGGGCAAGCAGCTGAAGCCCGCCTACCAGTCGGCCATCA
AGGAGCAGTATCATTCGGAGGCGGAGTCCATTAACTTTGCGCTCAACGAT
GCCGCCGCCCAGGCCATCAATGCCTGGGTGAATGCCAAGACTCAGGGCAA
GATTACGGAGCTGGTCAGCGCGGACTCGTTCTCGGACAACACCAGGCTGG
TCCTGCTCAATGCCCTCCACTTCAAGGGCAGCTGGGCGCACAAGTTCAGC
GAGGAGCGCACCGAGGAGGATATCTTCTGGGTGGGCGAGGAGGAGCAAGT
TAAAATCAACTACATGAACCAGAAGGCCAAGTTCAACTATGGCTTCTTCG
AAGATCTGGGCTGCACTGCCCTGGAGATGCCCTACCAGGACTCTGACCTC
TCCATGTTCGTGCTGCTGCCGCAGGAGCGGACAGGTATTTACGCCCTAGC
CGAGAAGCTCAAGACTGTGAACCTGGTGGATTTGGCCGACAAGTTGACCG
TGGAAGAGGTCCATGTCAAGTTCCCCAAGTTTAAGGTGGACTACTCCCTG
GAATTGGCCGAGAAACTGAAGCAGCTGGGCATCACGAAAATGTTTACGGA
CCAAGCTGAGTTTAGCAATCTGCTGGAATCCCCCGAGGGCGTCTTTGTGT
CCAAGGTGCTGCACAAGGCCACCATCGAGGTGAATGAGGAGGGCACGGAG
GCGGCGGCTGCCACCGGCATGATCATGATGACCCGCATGATGACCTTCCC
GCTGCAGTTCCAGGCGGACCGGCCCTTCCTCTACGTCATCTGGAATAAGA
AGAACATCCTCTTCGCTGGCGCCTTCGTTAAGGCTGCCGCAAGCTTTCTA
GACCAT
BO15241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn55B-RA | 1125 | CG10913-PA | 1..1122 | 17..1138 | 5595 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn55B-RA | 1297 | CG10913-RA | 94..1215 | 17..1138 | 5595 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18126440..18127297 | 17..874 | 4275 | 99.9 | Plus |
| 2R | 25286936 | 2R | 18127862..18128128 | 872..1138 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:43:00 has no hits.
BO15241.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:17 Download gff for
BO15241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn6-RA | 1..1125 | 17..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:41 Download gff for
BO15241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn6-RA | 120..1260 | 3..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:10 Download gff for
BO15241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn55B-RA | 99..1215 | 22..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:18 Download gff for
BO15241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn6-RA | 120..1260 | 3..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:43 Download gff for
BO15241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn55B-RA | 99..1215 | 22..1140 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:43 Download gff for
BO15241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18126445..18127297 | 22..874 | 99 | -> | Plus |
| 2R | 18127865..18128128 | 875..1140 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:10 Download gff for
BO15241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14013950..14014802 | 22..874 | 99 | -> | Plus |
| arm_2R | 14015370..14015633 | 875..1140 | 99 | | Plus |
BO15241.pep Sequence
Translation from 16 to 1156
> BO15241.pep
MFDFNLEFARGGARFTSELFQLLSAGGLKENVVFSPFSIQTCIALAFAGS
QGETADEIAKALHFVSNFPPEVAQTFQFVLEKYRNSNLLRVANKLYVQEG
KQLKPAYQSAIKEQYHSEAESINFALNDAAAQAINAWVNAKTQGKITELV
SADSFSDNTRLVLLNALHFKGSWAHKFSEERTEEDIFWVGEEEQVKINYM
NQKAKFNYGFFEDLGCTALEMPYQDSDLSMFVLLPQERTGIYALAEKLKT
VNLVDLADKLTVEEVHVKFPKFKVDYSLELAEKLKQLGITKMFTDQAEFS
NLLESPEGVFVSKVLHKATIEVNEEGTEAAAATGMIMMTRMMTFPLQFQA
DRPFLYVIWNKKNILFAGAFVKAAASFLDH
BO15241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn55B-PA | 374 | CG10913-PA | 1..374 | 1..374 | 1903 | 100 | Plus |
| Spn42Da-PL | 379 | CG9453-PL | 8..378 | 7..372 | 815 | 45.3 | Plus |
| Spn42Da-PK | 379 | CG9453-PK | 8..378 | 7..372 | 815 | 45.3 | Plus |
| Spn42Da-PH | 379 | CG9453-PH | 8..378 | 7..372 | 815 | 45.3 | Plus |
| Spn42Da-PF | 411 | CG9453-PF | 40..410 | 7..372 | 815 | 45.3 | Plus |
