Clone Sequence Records
BO15245.complete Sequence
421 bp assembled on 2010-04-12
GenBank Submission: KX798435
> BO15245.complete
GAAGTTATCAGTCGACATGTCTCTATCGCCAGCCAGTGGCATTGGTCGTT
TCTACGCCAAGTCGGCAAAAATCATACGTTTCGTACGCCTGGGATGCACC
AATCGGCCTTTTTATCACATTGTCGTCATGGAGAGGCGCAAGAACCAGCA
CCAGCCTGTCATCGAGCAGGTGGGCTCCTTTGATCCCCTGCCCAACGATT
ACAACGAACGACTGGTGGCCCTGAACACGGAGAGAATTCGCTATTGGCTG
GGCAAAGGTGCACACTTGTCCACGCCGGCTGCAGAACTCCTGGGAATTGC
CGGACTACTGCCCATCCACCCGCGCACCTACATGACCGCCTGGCGGAACC
GGAGGACAGCTGCTGAAGCGGAGGCGTCGCCAGAAAAGGCGGAATCAACC
GCAGCAAGCTTTCTAGACCAT
BO15245.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS16-RA | 390 | CG8338-PA | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS16-RA | 546 | CG8338-RA | 112..498 | 17..403 | 1935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14173034..14173305 | 403..132 | 1360 | 100 | Minus |
| 2R | 25286936 | 2R | 14173369..14173485 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:29:02 has no hits.
BO15245.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:23:31 Download gff for
BO15245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS16-RA | 52..438 | 17..405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:01 Download gff for
BO15245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS16-RA | 112..498 | 17..405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:28 Download gff for
BO15245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS16-RA | 112..498 | 17..405 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:28 Download gff for
BO15245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14173032..14173303 | 134..405 | 99 | <- | Minus |
| 2R | 14173369..14173485 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:01 Download gff for
BO15245.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10060537..10060808 | 134..405 | 99 | <- | Minus |
| arm_2R | 10060874..10060990 | 17..133 | 100 | | Minus |
BO15245.3prime Sequence
419 bp (418 high quality bases) assembled on 2006-06-16
> BO15245.3prime
ATGGTCTAGAAAGCTTGCTGCGGTTGATTCCGCCTTTTCTGGCGACGCCT
CCGCTTCAGCAGCTGTCCTCCGGTTCCGCCAGGCGGTCATGTAGGTGCGC
GGGTGGATGGGCAGTAGTCCGGCAATTCCCAGGAGTTCTGCAGCCGGCGT
GGACAAGTGTGCACCTTTGCCCAGCCAATAGCGAATTCTCTCCGTGTTCA
GGGCCACCAGTCGTTCGTTGTAATCGTTGGGCAGGGGATCAAAGGAGCCC
ACCTGCTCGATGACAGGCTGGTGCTGGTTCTTGCGCCTCTCCATGACGAC
AATGTGATAAAAAGGCCGATTGGTGCATCCCAGGCGTACGAAACGTATGA
TTTTTGCCGACTTGGCGTAGAAACGACCAATGCCACTGGCTGGCGATAGA
GACATGTCGACTGATAACT
BO15245.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8338-PA | 390 | mRpS16-RA | 1..387 | 405..19 | 1935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS16-RA | 546 | CG8338-RA | 112..498 | 405..19 | 1935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14173034..14173305 | 19..290 | 1360 | 100 | Plus |
| 2R | 25286936 | 2R | 14173369..14173485 | 289..405 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:14:19 has no hits.
BO15245.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:07 Download gff for
BO15245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8338-PA | 1..390 | 15..405 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:45:59 Download gff for
BO15245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8338-PA | 1..390 | 15..405 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:49:57 Download gff for
BO15245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS16-RA | 104..501 | 15..415 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:32:28 Download gff for
BO15245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS16-RA | 104..501 | 15..415 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:32:28 Download gff for
BO15245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14173030..14173303 | 15..288 | 99 | <- | Plus |
| 2R | 14173369..14173493 | 289..415 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:49:57 Download gff for
BO15245.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10060535..10060808 | 15..288 | 99 | <- | Plus |
| arm_2R | 10060874..10060998 | 289..415 | 96 | | Plus |
BO15245.5prime Sequence
419 bp (419 high quality bases) assembled on 2006-06-16
> BO15245.5prime
GAAGTTATCAGTCGACATGTCTCTATCGCCAGCCAGTGGCATTGGTCGTT
TCTACGCCAAGTCGGCAAAAATCATACGTTTCGTACGCCTGGGATGCACC
AATCGGCCTTTTTATCACATTGTCGTCATGGAGAGGCGCAAGAACCAGCA
CCAGCCTGTCATCGAGCAGGTGGGCTCCTTTGATCCCCTGCCCAACGATT
ACAACGAACGACTGGTGGCCCTGAACACGGAGAGAATTCGCTATTGGCTG
GGCAAAGGTGCACACTTGTCCACGCCGGCTGCAGAACTCCTGGGAATTGC
CGGACTACTGCCCATCCACCCGCGCACCTACATGACCGCCTGGCGGAACC
GGAGGACAGCTGCTGAAGCGGAGGCGTCGCCAGAAAAGGCGGAATCAACC
GCAGCAAGCTTTCTAGACC
BO15245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8338-PA | 390 | mRpS16-RA | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 06:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS16-RA | 546 | CG8338-RA | 112..498 | 17..403 | 1935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 06:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14173034..14173305 | 403..132 | 1360 | 100 | Minus |
| 2R | 25286936 | 2R | 14173369..14173485 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 06:28:31 has no hits.
BO15245.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:02 Download gff for
BO15245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8338-PA | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:08:37 Download gff for
BO15245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS16-RA | 104..501 | 7..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:41:10 Download gff for
BO15245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS16-RA | 104..501 | 7..407 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:41:10 Download gff for
BO15245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14173030..14173303 | 134..407 | 99 | <- | Minus |
| 2R | 14173369..14173493 | 7..133 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:08:37 Download gff for
BO15245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10060535..10060808 | 134..407 | 99 | <- | Minus |
| arm_2R | 10060874..10060998 | 7..133 | 96 | | Minus |
BO15245.pep Sequence
Translation from 16 to 421
> BO15245.pep
MSLSPASGIGRFYAKSAKIIRFVRLGCTNRPFYHIVVMERRKNQHQPVIE
QVGSFDPLPNDYNERLVALNTERIRYWLGKGAHLSTPAAELLGIAGLLPI
HPRTYMTAWRNRRTAAEAEASPEKAESTAASFLDH
BO15245.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS16-PA | 129 | CG8338-PA | 1..129 | 1..129 | 673 | 100 | Plus |
