Clone BO15246 Report

Search the DGRC for BO15246

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:152
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG18347-RA
Protein status:BO15246.pep: validated full length
Sequenced Size:997

Clone Sequence Records

BO15246.5prime Sequence

824 bp (796 high quality bases) assembled on 2006-06-16

> BO15246.5prime
GAAGTTATCAGTCGACATGTCGAGCAGTGCAACCATCGCAACGCCGCTGC
CGCAGCCGCAGCACCAGCAATTCGCCCTGCTGCCGAAGATCATTAACGGC
GGAATTGCGGGAATCATCGGAGTGACATGCGTCTTCCCACTGGACTTGGT
CAAGACGAGGCTGCAAAACCAGCAGATCGGACCCAATGGCGAACGCATGT
ACAACAGCATGTTCGATTGCTTCCGCAAGACGTACAAGGCCGAAGGATAC
TTTGGCATGTACCGCGGCTCTGGCGTGAACATCCTGCTAATCACACCTGA
GAAGGCCATCAAGTTGACCGCCAACGATTACTTCCGCCACAAGCTGACCA
CCAAGGATGGCAAACTTCCGCTGACCAGTCAGATGGTTGCCGGCGGTCTG
GCCGGTGCATTCCAAATTATCGTCACCACGCCCATGGAGCTTCTCAAGAT
CCAGATGCAGGATGCGGGTCGCGTGGCGGCGGCGGCCAAATTGGCTGGAA
AGACGGTGGAGAAGGTGTCGGCCACCCAATTGGCTTCCCAGCTTATCAAG
GACAAGGGCATCTTTGGCCTGTACAAGGGTATCGGTGCCACAGGACTGCG
AGATGTCACCTTCTCTATCATTTACTTCCCCCTTTTCGCTACTCTCAATG
ACCTGGGTCCACGACGAAACGATGGATCTGGCGAGGCTGTGTTCTGGTGC
TCCTTCCTGGCGGGCTTGGCGGCCGGTTCCACCGCTGCCCTCGCAGTTAA
TCCCTTCGACGTGGTCAAGACGCGTCTGCAGGCGATTAAGAAGGCCGACG
GTGAGAAGGAGTTCAAGGGCATAT

BO15246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG18347-PA 966 CG18347-RA 1..808 17..824 4015 99.8 Plus
CG12201-PA 723 CG12201-RA 166..206 422..462 155 95.1 Plus
CG12201-PB 960 CG12201-RB 403..443 422..462 155 95.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
GC1-RB 1658 CG18347-RB 182..989 17..824 4025 99.9 Plus
GC1-RA 1450 CG18347-RA 182..989 17..824 4025 99.9 Plus
GC2-RB 1070 CG12201-RB 146..540 83..477 460 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11970288..11970775 211..698 2425 99.8 Plus
3R 32079331 3R 11970095..11970231 76..212 685 100 Plus
3R 32079331 3R 11970833..11970961 696..824 645 100 Plus
3R 32079331 3R 11969218..11969276 17..75 295 100 Plus
3R 32079331 3R 11972130..11972366 241..477 285 74.7 Plus
3R 32079331 3R 11971901..11972030 83..212 245 79.2 Plus
Blast to na_te.dros performed on 2015-02-10 21:53:18 has no hits.

BO15246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:09 Download gff for BO15246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18347-PA 1..808 17..824 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:02 Download gff for BO15246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18347-PA 1..808 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:51:44 Download gff for BO15246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18347-RA 173..989 10..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:51 Download gff for BO15246.5prime
Subject Subject Range Query Range Percent Splice Strand
GC1-RA 173..989 10..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:51 Download gff for BO15246.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11969211..11969276 8..75 94 -> Plus
3R 11970095..11970229 76..210 100 -> Plus
3R 11970288..11970773 211..696 99 -> Plus
3R 11970834..11970961 697..824 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:51:44 Download gff for BO15246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7794933..7794998 8..75 94 -> Plus
arm_3R 7795817..7795951 76..210 100 -> Plus
arm_3R 7796010..7796495 211..696 99 -> Plus
arm_3R 7796556..7796683 697..824 100   Plus

BO15246.3prime Sequence

860 bp (857 high quality bases) assembled on 2006-06-16

> BO15246.3prime
ATGGTCTAGAAAGCTTGCCTTTTTCTGATAGCCCAGCAGGCCCTCGGCCA
CGCCCAGATAGTAGACCGTTTGAGCGATTCCGAACAGAGGAGCAATCACA
ATCATTCGGCACAGGCCGCCCTTGAAGAAGGCGGTGGGTCCCTCGTGCTT
CAGTGTCTTAGTGATACAATCTGATATGCCCTTGAACTCCTTCTCACCGT
CGGCCTTCTTAATCGCCTGCAGACGCGTCTTGACCACGTCGAAGGGATTA
ACTGCGAGGGCAGCGGTGGAACCGGCCGCCAAGCCCGCCAGGAAGGAGCA
CCAGAACACAGCCTCGCCAGATCCATCGTTTCGTCGTGGACCCAGGTCAT
TGAGAGTAGCGAAAAGGGGGAAGTAAATGATAGAGAAGGTGACATCTCGC
AGTCCTGTGGCACCGATACCCTTGTACAGGCCAAAGATGCCCTTGTCCTT
GATAAGCTGGGAAGCCAATTGGGTGGCCGACACCTTCTCCACCGTCTTTC
CAGCCAATTTGGCCGCCGCCGCCACGCGACCCGCATCCTGCATCTGGATC
TTGAGAAGCTCCATGGGCGTGGTGACGATAATTTGGAATGCACCGGCCAG
ACCGCCGGCAACCATCTGACTGGTCAGCGGAAGTTTGCCATCCTTGGTGG
TCAGCTTGTGGCGGAAGTAATCGTTGGCGGTCAACTTGATGGCCTTCTCA
GGTGTGATTAGCAGGATGTTCACGCCAGAGCCGCGGTACATGCCAAAGTA
TCCTTCGGCCTTGTACGTCTTGCGGAAGCAATCGAACATGCTGTTGTACA
TGCGTTCGCCATTGGGTCCGATCTGCTGGTTTTGCAGCCTCGTCTTGACC
AAGTCCAGTG

BO15246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG18347-PA 966 CG18347-RA 122..963 860..19 4185 99.8 Minus
CG12201-PA 723 CG12201-RA 166..206 576..536 155 95.1 Minus
CG12201-PB 960 CG12201-RB 403..443 576..536 155 95.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
GC1-RB 1658 CG18347-RB 303..1144 860..19 4195 99.9 Minus
GC1-RA 1450 CG18347-RA 303..1144 860..19 4195 99.9 Minus
Tango9-RB 3673 CG10007-RB 3508..3649 19..160 710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11970288..11970775 787..300 2425 99.8 Minus
3R 32079331 3R 11970833..11970974 302..161 710 100 Minus
3R 32079331 3R 11971031..11971172 160..19 710 100 Minus
3R 32079331 3R 11970157..11970231 860..786 375 100 Minus
3R 32079331 3R 11972130..11972366 757..521 285 74.7 Minus
Blast to na_te.dros performed on 2015-02-02 18:46:17 has no hits.

BO15246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:08 Download gff for BO15246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18347-PA 122..966 18..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:01 Download gff for BO15246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18347-PA 122..966 18..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:49:43 Download gff for BO15246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18347-RA 303..1144 19..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:03:58 Download gff for BO15246.3prime
Subject Subject Range Query Range Percent Splice Strand
GC1-RA 303..1144 19..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:03:58 Download gff for BO15246.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11970157..11970229 788..860 100 -> Minus
3R 11970288..11970773 302..787 99 -> Minus
3R 11970834..11970974 161..301 100 -> Minus
3R 11971031..11971172 19..160 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:49:43 Download gff for BO15246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7795879..7795951 788..860 100 -> Minus
arm_3R 7796010..7796495 302..787 99 -> Minus
arm_3R 7796556..7796696 161..301 100 -> Minus
arm_3R 7796753..7796894 19..160 100   Minus

BO15246.complete Sequence

997 bp (997 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633390

> BO15246.complete
GAAGTTATCAGTCGACATGTCGAGCAGTGCAACCATCGCAACGCCGCTGC
CGCAGCCGCAGCACCAGCAATTCGCCCTGCTGCCGAAGATCATTAACGGC
GGAATTGCGGGAATCATCGGAGTGACATGCGTCTTCCCACTGGACTTGGT
CAAGACGAGGCTGCAAAACCAGCAGATCGGACCCAATGGCGAACGCATGT
ACAACAGCATGTTCGATTGCTTCCGCAAGACGTACAAGGCCGAAGGATAC
TTTGGCATGTACCGCGGCTCTGGCGTGAACATCCTGCTAATCACACCTGA
GAAGGCCATCAAGTTGACCGCCAACGATTACTTCCGCCACAAGCTGACCA
CCAAGGATGGCAAACTTCCGCTGACCAGTCAGATGGTTGCCGGCGGTCTG
GCCGGTGCATTCCAAATTATCGTCACCACGCCCATGGAGCTTCTCAAGAT
CCAGATGCAGGATGCGGGTCGCGTGGCGGCGGCGGCCAAATTGGCTGGAA
AGACGGTGGAGAAGGTGTCGGCCACCCAATTGGCTTCCCAGCTTATCAAG
GACAAGGGCATCTTTGGCCTGTACAAGGGTATCGGTGCCACAGGACTGCG
AGATGTCACCTTCTCTATCATTTACTTCCCCCTTTTCGCTACTCTCAATG
ACCTGGGTCCACGACGAAACGATGGATCTGGCGAGGCTGTGTTCTGGTGC
TCCTTCCTGGCGGGCTTGGCGGCCGGTTCCACCGCTGCCCTCGCAGTTAA
TCCCTTCGACGTGGTCAAGACGCGTCTGCAGGCGATTAAGAAGGCCGACG
GTGAGAAGGAGTTCAAGGGCATATCAGATTGTATCACTAAGACACTGAAG
CACGAGGGACCCACCGCCTTCTTCAAGGGCGGCCTGTGCCGAATGATTGT
GATTGCTCCTCTGTTCGGAATCGCTCAAACGGTCTACTATCTGGGCGTGG
CCGAGGGCCTGCTGGGCTATCAGAAAAAGGCAAGCTTTCTAGACCAT

BO15246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
GC1-RB 966 CG18347-PB 1..963 17..979 4800 99.9 Plus
GC1-RA 966 CG18347-PA 1..963 17..979 4800 99.9 Plus
GC2-RB 960 CG12201-PB 64..458 83..477 460 74.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
GC1-RB 1658 CG18347-RB 182..1144 17..979 4800 99.9 Plus
GC1-RA 1450 CG18347-RA 182..1144 17..979 4800 99.9 Plus
Tango9-RB 3673 CG10007-RB 3508..3649 979..838 710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11970288..11970775 211..698 2425 99.8 Plus
3R 32079331 3R 11970833..11970974 696..837 710 100 Plus
3R 32079331 3R 11971031..11971172 838..979 710 100 Plus
3R 32079331 3R 11970095..11970231 76..212 685 100 Plus
3R 32079331 3R 11969218..11969276 17..75 295 100 Plus
3R 32079331 3R 11972130..11972366 241..477 285 74.7 Plus
3R 32079331 3R 11971901..11972030 83..212 245 79.2 Plus
Blast to na_te.dros performed on 2014-11-27 16:37:35 has no hits.

BO15246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:21 Download gff for BO15246.complete
Subject Subject Range Query Range Percent Splice Strand
CG18347-RA 1..966 17..980 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:43 Download gff for BO15246.complete
Subject Subject Range Query Range Percent Splice Strand
CG18347-RA 152..1123 10..979 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:31 Download gff for BO15246.complete
Subject Subject Range Query Range Percent Splice Strand
CG18347-RA 182..1144 17..981 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:22 Download gff for BO15246.complete
Subject Subject Range Query Range Percent Splice Strand
CG18347-RA 152..1123 10..979 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:55 Download gff for BO15246.complete
Subject Subject Range Query Range Percent Splice Strand
GC1-RA 182..1144 17..981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:55 Download gff for BO15246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11969218..11969276 17..75 100 -> Plus
3R 11970095..11970229 76..210 100 -> Plus
3R 11970288..11970773 211..696 99 -> Plus
3R 11970834..11970974 697..837 100 -> Plus
3R 11971031..11971172 838..981 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:31 Download gff for BO15246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7794940..7794998 17..75 100 -> Plus
arm_3R 7795817..7795951 76..210 100 -> Plus
arm_3R 7796010..7796495 211..696 99 -> Plus
arm_3R 7796556..7796696 697..837 100 -> Plus
arm_3R 7796753..7796894 838..981 98   Plus

BO15246.pep Sequence

Translation from 16 to 997

> BO15246.pep
MSSSATIATPLPQPQHQQFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQ
NQQIGPNGERMYNSMFDCFRKTYKAEGYFGMYRGSGVNILLITPEKAIKL
TANDYFRHKLTTKDGKLPLTSQMVAGGLAGAFQIIVTTPMELLKIQMQDA
GRVAAAAKLAGKTVEKVSATQLASQLIKDKGIFGLYKGIGATGLRDVTFS
IIYFPLFATLNDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDVV
KTRLQAIKKADGEKEFKGISDCITKTLKHEGPTAFFKGGLCRMIVIAPLF
GIAQTVYYLGVAEGLLGYQKKASFLDH

BO15246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
GC1-PB 321 CG18347-PB 1..321 1..321 1642 100 Plus
GC1-PA 321 CG18347-PA 1..321 1..321 1642 100 Plus
GC2-PB 319 CG12201-PB 12..318 13..323 1114 67.5 Plus
GC2-PD 240 CG12201-PD 1..239 81..323 839 65.8 Plus
aralar1-PB 679 CG2139-PB 333..599 28..309 544 41.7 Plus