Clone Sequence Records
BO15246.5prime Sequence
824 bp (796 high quality bases) assembled on 2006-06-16
> BO15246.5prime
GAAGTTATCAGTCGACATGTCGAGCAGTGCAACCATCGCAACGCCGCTGC
CGCAGCCGCAGCACCAGCAATTCGCCCTGCTGCCGAAGATCATTAACGGC
GGAATTGCGGGAATCATCGGAGTGACATGCGTCTTCCCACTGGACTTGGT
CAAGACGAGGCTGCAAAACCAGCAGATCGGACCCAATGGCGAACGCATGT
ACAACAGCATGTTCGATTGCTTCCGCAAGACGTACAAGGCCGAAGGATAC
TTTGGCATGTACCGCGGCTCTGGCGTGAACATCCTGCTAATCACACCTGA
GAAGGCCATCAAGTTGACCGCCAACGATTACTTCCGCCACAAGCTGACCA
CCAAGGATGGCAAACTTCCGCTGACCAGTCAGATGGTTGCCGGCGGTCTG
GCCGGTGCATTCCAAATTATCGTCACCACGCCCATGGAGCTTCTCAAGAT
CCAGATGCAGGATGCGGGTCGCGTGGCGGCGGCGGCCAAATTGGCTGGAA
AGACGGTGGAGAAGGTGTCGGCCACCCAATTGGCTTCCCAGCTTATCAAG
GACAAGGGCATCTTTGGCCTGTACAAGGGTATCGGTGCCACAGGACTGCG
AGATGTCACCTTCTCTATCATTTACTTCCCCCTTTTCGCTACTCTCAATG
ACCTGGGTCCACGACGAAACGATGGATCTGGCGAGGCTGTGTTCTGGTGC
TCCTTCCTGGCGGGCTTGGCGGCCGGTTCCACCGCTGCCCTCGCAGTTAA
TCCCTTCGACGTGGTCAAGACGCGTCTGCAGGCGATTAAGAAGGCCGACG
GTGAGAAGGAGTTCAAGGGCATAT
BO15246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18347-PA | 966 | CG18347-RA | 1..808 | 17..824 | 4015 | 99.8 | Plus |
CG12201-PA | 723 | CG12201-RA | 166..206 | 422..462 | 155 | 95.1 | Plus |
CG12201-PB | 960 | CG12201-RB | 403..443 | 422..462 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GC1-RB | 1658 | CG18347-RB | 182..989 | 17..824 | 4025 | 99.9 | Plus |
GC1-RA | 1450 | CG18347-RA | 182..989 | 17..824 | 4025 | 99.9 | Plus |
GC2-RB | 1070 | CG12201-RB | 146..540 | 83..477 | 460 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11970288..11970775 | 211..698 | 2425 | 99.8 | Plus |
3R | 32079331 | 3R | 11970095..11970231 | 76..212 | 685 | 100 | Plus |
3R | 32079331 | 3R | 11970833..11970961 | 696..824 | 645 | 100 | Plus |
3R | 32079331 | 3R | 11969218..11969276 | 17..75 | 295 | 100 | Plus |
3R | 32079331 | 3R | 11972130..11972366 | 241..477 | 285 | 74.7 | Plus |
3R | 32079331 | 3R | 11971901..11972030 | 83..212 | 245 | 79.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:53:18 has no hits.
BO15246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:09 Download gff for
BO15246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-PA | 1..808 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:02 Download gff for
BO15246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-PA | 1..808 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:51:44 Download gff for
BO15246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-RA | 173..989 | 10..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:51 Download gff for
BO15246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GC1-RA | 173..989 | 10..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:51 Download gff for
BO15246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11969211..11969276 | 8..75 | 94 | -> | Plus |
3R | 11970095..11970229 | 76..210 | 100 | -> | Plus |
3R | 11970288..11970773 | 211..696 | 99 | -> | Plus |
3R | 11970834..11970961 | 697..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:51:44 Download gff for
BO15246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7794933..7794998 | 8..75 | 94 | -> | Plus |
arm_3R | 7795817..7795951 | 76..210 | 100 | -> | Plus |
arm_3R | 7796010..7796495 | 211..696 | 99 | -> | Plus |
arm_3R | 7796556..7796683 | 697..824 | 100 | | Plus |
BO15246.3prime Sequence
860 bp (857 high quality bases) assembled on 2006-06-16
> BO15246.3prime
ATGGTCTAGAAAGCTTGCCTTTTTCTGATAGCCCAGCAGGCCCTCGGCCA
CGCCCAGATAGTAGACCGTTTGAGCGATTCCGAACAGAGGAGCAATCACA
ATCATTCGGCACAGGCCGCCCTTGAAGAAGGCGGTGGGTCCCTCGTGCTT
CAGTGTCTTAGTGATACAATCTGATATGCCCTTGAACTCCTTCTCACCGT
CGGCCTTCTTAATCGCCTGCAGACGCGTCTTGACCACGTCGAAGGGATTA
ACTGCGAGGGCAGCGGTGGAACCGGCCGCCAAGCCCGCCAGGAAGGAGCA
CCAGAACACAGCCTCGCCAGATCCATCGTTTCGTCGTGGACCCAGGTCAT
TGAGAGTAGCGAAAAGGGGGAAGTAAATGATAGAGAAGGTGACATCTCGC
AGTCCTGTGGCACCGATACCCTTGTACAGGCCAAAGATGCCCTTGTCCTT
GATAAGCTGGGAAGCCAATTGGGTGGCCGACACCTTCTCCACCGTCTTTC
CAGCCAATTTGGCCGCCGCCGCCACGCGACCCGCATCCTGCATCTGGATC
TTGAGAAGCTCCATGGGCGTGGTGACGATAATTTGGAATGCACCGGCCAG
ACCGCCGGCAACCATCTGACTGGTCAGCGGAAGTTTGCCATCCTTGGTGG
TCAGCTTGTGGCGGAAGTAATCGTTGGCGGTCAACTTGATGGCCTTCTCA
GGTGTGATTAGCAGGATGTTCACGCCAGAGCCGCGGTACATGCCAAAGTA
TCCTTCGGCCTTGTACGTCTTGCGGAAGCAATCGAACATGCTGTTGTACA
TGCGTTCGCCATTGGGTCCGATCTGCTGGTTTTGCAGCCTCGTCTTGACC
AAGTCCAGTG
BO15246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18347-PA | 966 | CG18347-RA | 122..963 | 860..19 | 4185 | 99.8 | Minus |
CG12201-PA | 723 | CG12201-RA | 166..206 | 576..536 | 155 | 95.1 | Minus |
CG12201-PB | 960 | CG12201-RB | 403..443 | 576..536 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GC1-RB | 1658 | CG18347-RB | 303..1144 | 860..19 | 4195 | 99.9 | Minus |
GC1-RA | 1450 | CG18347-RA | 303..1144 | 860..19 | 4195 | 99.9 | Minus |
Tango9-RB | 3673 | CG10007-RB | 3508..3649 | 19..160 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11970288..11970775 | 787..300 | 2425 | 99.8 | Minus |
3R | 32079331 | 3R | 11970833..11970974 | 302..161 | 710 | 100 | Minus |
3R | 32079331 | 3R | 11971031..11971172 | 160..19 | 710 | 100 | Minus |
3R | 32079331 | 3R | 11970157..11970231 | 860..786 | 375 | 100 | Minus |
3R | 32079331 | 3R | 11972130..11972366 | 757..521 | 285 | 74.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:46:17 has no hits.
BO15246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:08 Download gff for
BO15246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-PA | 122..966 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:01 Download gff for
BO15246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-PA | 122..966 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:49:43 Download gff for
BO15246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-RA | 303..1144 | 19..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:03:58 Download gff for
BO15246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GC1-RA | 303..1144 | 19..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:03:58 Download gff for
BO15246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11970157..11970229 | 788..860 | 100 | -> | Minus |
3R | 11970288..11970773 | 302..787 | 99 | -> | Minus |
3R | 11970834..11970974 | 161..301 | 100 | -> | Minus |
3R | 11971031..11971172 | 19..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:49:43 Download gff for
BO15246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7795879..7795951 | 788..860 | 100 | -> | Minus |
arm_3R | 7796010..7796495 | 302..787 | 99 | -> | Minus |
arm_3R | 7796556..7796696 | 161..301 | 100 | -> | Minus |
arm_3R | 7796753..7796894 | 19..160 | 100 | | Minus |
BO15246.complete Sequence
997 bp (997 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633390
> BO15246.complete
GAAGTTATCAGTCGACATGTCGAGCAGTGCAACCATCGCAACGCCGCTGC
CGCAGCCGCAGCACCAGCAATTCGCCCTGCTGCCGAAGATCATTAACGGC
GGAATTGCGGGAATCATCGGAGTGACATGCGTCTTCCCACTGGACTTGGT
CAAGACGAGGCTGCAAAACCAGCAGATCGGACCCAATGGCGAACGCATGT
ACAACAGCATGTTCGATTGCTTCCGCAAGACGTACAAGGCCGAAGGATAC
TTTGGCATGTACCGCGGCTCTGGCGTGAACATCCTGCTAATCACACCTGA
GAAGGCCATCAAGTTGACCGCCAACGATTACTTCCGCCACAAGCTGACCA
CCAAGGATGGCAAACTTCCGCTGACCAGTCAGATGGTTGCCGGCGGTCTG
GCCGGTGCATTCCAAATTATCGTCACCACGCCCATGGAGCTTCTCAAGAT
CCAGATGCAGGATGCGGGTCGCGTGGCGGCGGCGGCCAAATTGGCTGGAA
AGACGGTGGAGAAGGTGTCGGCCACCCAATTGGCTTCCCAGCTTATCAAG
GACAAGGGCATCTTTGGCCTGTACAAGGGTATCGGTGCCACAGGACTGCG
AGATGTCACCTTCTCTATCATTTACTTCCCCCTTTTCGCTACTCTCAATG
ACCTGGGTCCACGACGAAACGATGGATCTGGCGAGGCTGTGTTCTGGTGC
TCCTTCCTGGCGGGCTTGGCGGCCGGTTCCACCGCTGCCCTCGCAGTTAA
TCCCTTCGACGTGGTCAAGACGCGTCTGCAGGCGATTAAGAAGGCCGACG
GTGAGAAGGAGTTCAAGGGCATATCAGATTGTATCACTAAGACACTGAAG
CACGAGGGACCCACCGCCTTCTTCAAGGGCGGCCTGTGCCGAATGATTGT
GATTGCTCCTCTGTTCGGAATCGCTCAAACGGTCTACTATCTGGGCGTGG
CCGAGGGCCTGCTGGGCTATCAGAAAAAGGCAAGCTTTCTAGACCAT
BO15246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GC1-RB | 966 | CG18347-PB | 1..963 | 17..979 | 4800 | 99.9 | Plus |
GC1-RA | 966 | CG18347-PA | 1..963 | 17..979 | 4800 | 99.9 | Plus |
GC2-RB | 960 | CG12201-PB | 64..458 | 83..477 | 460 | 74.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GC1-RB | 1658 | CG18347-RB | 182..1144 | 17..979 | 4800 | 99.9 | Plus |
GC1-RA | 1450 | CG18347-RA | 182..1144 | 17..979 | 4800 | 99.9 | Plus |
Tango9-RB | 3673 | CG10007-RB | 3508..3649 | 979..838 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11970288..11970775 | 211..698 | 2425 | 99.8 | Plus |
3R | 32079331 | 3R | 11970833..11970974 | 696..837 | 710 | 100 | Plus |
3R | 32079331 | 3R | 11971031..11971172 | 838..979 | 710 | 100 | Plus |
3R | 32079331 | 3R | 11970095..11970231 | 76..212 | 685 | 100 | Plus |
3R | 32079331 | 3R | 11969218..11969276 | 17..75 | 295 | 100 | Plus |
3R | 32079331 | 3R | 11972130..11972366 | 241..477 | 285 | 74.7 | Plus |
3R | 32079331 | 3R | 11971901..11972030 | 83..212 | 245 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:37:35 has no hits.
BO15246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:21 Download gff for
BO15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-RA | 1..966 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:43 Download gff for
BO15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-RA | 152..1123 | 10..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:31 Download gff for
BO15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-RA | 182..1144 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:22 Download gff for
BO15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18347-RA | 152..1123 | 10..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:55 Download gff for
BO15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GC1-RA | 182..1144 | 17..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:55 Download gff for
BO15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11969218..11969276 | 17..75 | 100 | -> | Plus |
3R | 11970095..11970229 | 76..210 | 100 | -> | Plus |
3R | 11970288..11970773 | 211..696 | 99 | -> | Plus |
3R | 11970834..11970974 | 697..837 | 100 | -> | Plus |
3R | 11971031..11971172 | 838..981 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:31 Download gff for
BO15246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7794940..7794998 | 17..75 | 100 | -> | Plus |
arm_3R | 7795817..7795951 | 76..210 | 100 | -> | Plus |
arm_3R | 7796010..7796495 | 211..696 | 99 | -> | Plus |
arm_3R | 7796556..7796696 | 697..837 | 100 | -> | Plus |
arm_3R | 7796753..7796894 | 838..981 | 98 | | Plus |
BO15246.pep Sequence
Translation from 16 to 997
> BO15246.pep
MSSSATIATPLPQPQHQQFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQ
NQQIGPNGERMYNSMFDCFRKTYKAEGYFGMYRGSGVNILLITPEKAIKL
TANDYFRHKLTTKDGKLPLTSQMVAGGLAGAFQIIVTTPMELLKIQMQDA
GRVAAAAKLAGKTVEKVSATQLASQLIKDKGIFGLYKGIGATGLRDVTFS
IIYFPLFATLNDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDVV
KTRLQAIKKADGEKEFKGISDCITKTLKHEGPTAFFKGGLCRMIVIAPLF
GIAQTVYYLGVAEGLLGYQKKASFLDH
BO15246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GC1-PB | 321 | CG18347-PB | 1..321 | 1..321 | 1642 | 100 | Plus |
GC1-PA | 321 | CG18347-PA | 1..321 | 1..321 | 1642 | 100 | Plus |
GC2-PB | 319 | CG12201-PB | 12..318 | 13..323 | 1114 | 67.5 | Plus |
GC2-PD | 240 | CG12201-PD | 1..239 | 81..323 | 839 | 65.8 | Plus |
aralar1-PB | 679 | CG2139-PB | 333..599 | 28..309 | 544 | 41.7 | Plus |