Clone Sequence Records
BO15263.3prime Sequence
473 bp (472 high quality bases) assembled on 2006-06-16
> BO15263.3prime
ATGGTCTAGAAAGCTTGCACGCTCATCGATGGCCTGATTGGGCTGCTCCT
CCGGTCCTTTGGCATTGTAAACATTGCGATTCTGGGACAGATGCCATAGG
GCTAGCAGGCGGGCCAGCTCCGTGTAGGTTAGCTTGCGCAGATCACGTCG
ATCGGCCAGCTTAACTCCGGCGGCCTCTAGCTCCTCCACCAATGTGACGG
CATCGTATTCATCCTCCGGATTCTGCTCATTGCGTGGCGCAATTTTTCCG
ACGAACTCCGACTCTGGCACCGCTTCGCTCTTCACCATGCGCTGCATCTG
CTGCACATGCTGCTGTTTATGCTGACGTTGCTGACCCAATGGCTCGTCGA
CATCTTTTAGCTCCTGTTCGGGATTCATGGGCAGCGAATTGGCCAGGCTG
ACCATGCCGAGGATCACCAGGAAGATGACCGGAATATTGTTGCACCCAAT
GGGTTTCATGTCGACTGATAACT
BO15263.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15209-PA | 444 | CG15209-RA | 1..441 | 459..19 | 2205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15209-RA | 791 | CG15209-RA | 40..482 | 461..19 | 2215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10842244..10842686 | 461..19 | 2215 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 18:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2391 | 333..291 | 116 | 74.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6854..6889 | 333..298 | 108 | 77.8 | Minus |
gtwin | 7411 | gtwin GTWIN 7411bp | 2392..2423 | 379..348 | 106 | 81.2 | Minus |
BO15263.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:20 Download gff for
BO15263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-PA | 1..444 | 15..459 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:16 Download gff for
BO15263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-PA | 1..444 | 15..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:50:26 Download gff for
BO15263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 86..538 | 10..465 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:17 Download gff for
BO15263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 36..488 | 10..465 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:17 Download gff for
BO15263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10842240..10842692 | 10..465 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:50:26 Download gff for
BO15263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10736273..10736725 | 10..465 | 98 | | Minus |
BO15263.5prime Sequence
473 bp (472 high quality bases) assembled on 2006-06-16
> BO15263.5prime
GAAGTTATCAGTCGACATGAAACCCATTGGGTGCAACAATATTCCGGTCA
TCTTCCTGGTGATCCTCGGCATGGTCAGCCTGGCCAATTCGCTGCCCATG
AATCCCGAACAGGAGCTAAAAGATGTCGACGAGCCATTGGGTCAGCAACG
TCAGCATAAACAGCAGCATGTGCAGCAGATGCAGCGCATGGTGAAGAGCG
AAGCGGTGCCAGAGTCGGAGTTCGTCGGAAAAATTGCGCCACGCAATGAG
CAGAATCCGGAGGATGAATACGATGCCGTCACATTGGTGGAGGAGCTAGA
GGCCGCCGGAGTTAAGCTGGCCGATCGACGTGATCTGCGCAAGCTAACCT
ACACGGAGCTGGCCCGCCTGCTAGCCCTATGGCATCTGTCCCAGAATCGC
AATGTTTACAATGCCAAAGGACCGGAGGAGCAGCCCAATCAGGCCATCGA
TGAGCGTGCAAGCTTTCTAGACC
BO15263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15209-PA | 444 | CG15209-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15209-RA | 791 | CG15209-RA | 40..482 | 15..457 | 2215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10842244..10842686 | 15..457 | 2215 | 100 | Plus |
Blast to na_te.dros performed 2015-02-09 22:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2391 | 143..185 | 116 | 74.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6854..6889 | 143..178 | 108 | 77.8 | Plus |
gtwin | 7411 | gtwin GTWIN 7411bp | 2392..2423 | 97..128 | 106 | 81.2 | Plus |
BO15263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:21 Download gff for
BO15263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-PA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:17 Download gff for
BO15263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-PA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:21 Download gff for
BO15263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 86..538 | 11..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:32 Download gff for
BO15263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 36..488 | 11..466 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:32 Download gff for
BO15263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10842240..10842692 | 11..466 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:21 Download gff for
BO15263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10736273..10736725 | 11..466 | 98 | | Plus |
BO15263.complete Sequence
475 bp (475 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633391
> BO15263.complete
GAAGTTATCAGTCGACATGAAACCCATTGGGTGCAACAATATTCCGGTCA
TCTTCCTGGTGATCCTCGGCATGGTCAGCCTGGCCAATTCGCTGCCCATG
AATCCCGAACAGGAGCTAAAAGATGTCGACGAGCCATTGGGTCAGCAACG
TCAGCATAAACAGCAGCATGTGCAGCAGATGCAGCGCATGGTGAAGAGCG
AAGCGGTGCCAGAGTCGGAGTTCGTCGGAAAAATTGCGCCACGCAATGAG
CAGAATCCGGAGGATGAATACGATGCCGTCACATTGGTGGAGGAGCTAGA
GGCCGCCGGAGTTAAGCTGGCCGATCGACGTGATCTGCGCAAGCTAACCT
ACACGGAGCTGGCCCGCCTGCTAGCCCTATGGCATCTGTCCCAGAATCGC
AATGTTTACAATGCCAAAGGACCGGAGGAGCAGCCCAATCAGGCCATCGA
TGAGCGTGCAAGCTTTCTAGACCAT
BO15263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15209-RA | 444 | CG15209-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15209-RA | 791 | CG15209-RA | 40..482 | 15..457 | 2215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10842244..10842686 | 15..457 | 2215 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2391 | 143..185 | 116 | 74.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6854..6889 | 143..178 | 108 | 77.8 | Plus |
gtwin | 7411 | gtwin GTWIN 7411bp | 2392..2423 | 97..128 | 106 | 81.2 | Plus |
BO15263.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:42 Download gff for
BO15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:59 Download gff for
BO15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 86..538 | 11..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:18 Download gff for
BO15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 92..532 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:43 Download gff for
BO15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 86..538 | 11..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:36 Download gff for
BO15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15209-RA | 42..482 | 17..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:36 Download gff for
BO15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10842246..10842686 | 17..459 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:18 Download gff for
BO15263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10736279..10736719 | 17..459 | 99 | | Plus |
BO15263.pep Sequence
Translation from 16 to 475
> BO15263.pep
MKPIGCNNIPVIFLVILGMVSLANSLPMNPEQELKDVDEPLGQQRQHKQQ
HVQQMQRMVKSEAVPESEFVGKIAPRNEQNPEDEYDAVTLVEELEAAGVK
LADRRDLRKLTYTELARLLALWHLSQNRNVYNAKGPEEQPNQAIDERASF
LDH
BO15263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15209-PA | 147 | CG15209-PA | 1..147 | 1..147 | 755 | 100 | Plus |