Clone Sequence Records
BO15267.5prime Sequence
500 bp (500 high quality bases) assembled on 2006-06-16
> BO15267.5prime
GAAGTTATCAGTCGACATGGAGTCCGAGTCGTTTTATGGTGTCACACTCA
GCGAGAAGGAGGCCATCGCACAGTTCGAGGTCCCAGATGTACCCGAGGAG
TACATCGTCCACTCGCACAAGCTCATCATCAAACAGATTTCCCTCGGCCC
AGAAGCGAAGACCGGCGAATTCAACGTTGTACAGGCGGAGACGAACATAA
ACGACGATGGCGAGAAGAAAACCTTGAAGATCCCCATTGCCGTGTTGAAG
GTCGGCGAGACCCGTAGCTTAAGACCAAATGTCGAGTTCCCCAATGGATC
AGTGACCTTCAAACTGGTGCAGGGAAGTGGACCCGTACACGTATGCGGCA
AGGTCGAGATGAACTTTGGCGAGTTTGACGACGGTCAGATTTACGAGGAG
TATTCGGACGAGGAGGAGGATAGCGAACTGGAATTCGACGAAGAAGCAGC
TCCTCAGACGAACGGCAAGAGTAATAAGAAGAAGGCAAGCTTTCTAGACC
BO15267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7911-PA | 471 | CG7911-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7911-RB | 656 | CG7911-RB | 97..564 | 17..484 | 2340 | 100 | Plus |
CG7911-RA | 818 | CG7911-RA | 259..726 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30003988..30004160 | 354..182 | 865 | 100 | Minus |
3R | 32079331 | 3R | 30004303..30004450 | 185..38 | 740 | 100 | Minus |
3R | 32079331 | 3R | 30003773..30003906 | 484..351 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:05:50 has no hits.
BO15267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:43:10 Download gff for
BO15267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7911-PA | 1..471 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:29 Download gff for
BO15267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7911-RA | 259..726 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:42 Download gff for
BO15267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7911-RA | 259..726 | 17..484 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:42 Download gff for
BO15267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30003990..30004157 | 185..352 | 100 | <- | Minus |
3R | 30004304..30004449 | 39..184 | 100 | <- | Minus |
3R | 30004582..30004603 | 17..38 | 100 | | Minus |
3R | 30003773..30003904 | 353..484 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:29 Download gff for
BO15267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25829495..25829626 | 353..484 | 100 | <- | Minus |
arm_3R | 25829712..25829879 | 185..352 | 100 | <- | Minus |
arm_3R | 25830026..25830171 | 39..184 | 100 | <- | Minus |
arm_3R | 25830304..25830325 | 17..38 | 100 | | Minus |
BO15267.3prime Sequence
500 bp (499 high quality bases) assembled on 2006-06-16
> BO15267.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCTTATTACTCTTGCCGTTCGTCTGAG
GAGCTGCTTCTTCGTCGAATTCCAGTTCGCTATCCTCCTCCTCGTCCGAA
TACTCCTCGTAAATCTGACCGTCGTCAAACTCGCCAAAGTTCATCTCGAC
CTTGCCGCATACGTGTACGGGTCCACTTCCCTGCACCAGTTTGAAGGTCA
CTGATCCATTGGGGAACTCGACATTTGGTCTTAAGCTACGGGTCTCGCCG
ACCTTCAACACGGCAATGGGGATCTTCAAGGTTTTCTTCTCGCCATCGTC
GTTTATGTTCGTCTCCGCCTGTACAACGTTGAATTCGCCGGTCTTCGCTT
CTGGGCCGAGGGAAATCTGTTTGATGATGAGCTTGTGCGAGTGGACGATG
TACTCCTCGGGTACATCTGGGACCTCGAACTGTGCGATGGCCTCCTTCTC
GCTGAGTGTGACACCATAAAACGACTCGGACTCCATGTCGACTGATAACT
BO15267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7911-PA | 471 | CG7911-RA | 1..468 | 486..19 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:52:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7911-RB | 656 | CG7911-RB | 97..564 | 486..19 | 2340 | 100 | Minus |
CG7911-RA | 818 | CG7911-RA | 259..726 | 486..19 | 2340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30003988..30004160 | 149..321 | 865 | 100 | Plus |
3R | 32079331 | 3R | 30004303..30004450 | 318..465 | 740 | 100 | Plus |
3R | 32079331 | 3R | 30003773..30003906 | 19..152 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:52:16 has no hits.
BO15267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:25 Download gff for
BO15267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7911-PA | 1..471 | 18..486 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:21 Download gff for
BO15267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7911-PA | 1..471 | 18..486 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:50:14 Download gff for
BO15267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7911-RA | 259..726 | 19..486 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:04:34 Download gff for
BO15267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7911-RA | 259..726 | 19..486 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:04:34 Download gff for
BO15267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30003773..30003904 | 19..150 | 100 | <- | Plus |
3R | 30003990..30004157 | 151..318 | 100 | <- | Plus |
3R | 30004304..30004449 | 319..464 | 100 | <- | Plus |
3R | 30004582..30004603 | 465..486 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:50:14 Download gff for
BO15267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25829495..25829626 | 19..150 | 100 | <- | Plus |
arm_3R | 25829712..25829879 | 151..318 | 100 | <- | Plus |
arm_3R | 25830026..25830171 | 319..464 | 100 | <- | Plus |
arm_3R | 25830304..25830325 | 465..486 | 100 | | Plus |
BO15267.complete Sequence
502 bp assembled on 2008-08-15
GenBank Submission: FJ633393
> BO15267.complete
GAAGTTATCAGTCGACATGGAGTCCGAGTCGTTTTATGGTGTCACACTCA
GCGAGAAGGAGGCCATCGCACAGTTCGAGGTCCCAGATGTACCCGAGGAG
TACATCGTCCACTCGCACAAGCTCATCATCAAACAGATTTCCCTCGGCCC
AGAAGCGAAGACCGGCGAATTCAACGTTGTACAGGCGGAGACGAACATAA
ACGACGATGGCGAGAAGAAAACCTTGAAGATCCCCATTGCCGTGTTGAAG
GTCGGCGAGACCCGTAGCTTAAGACCAAATGTCGAGTTCCCCAATGGATC
AGTGACCTTCAAACTGGTGCAGGGAAGTGGACCCGTACACGTATGCGGCA
AGGTCGAGATGAACTTTGGCGAGTTTGACGACGGTCAGATTTACGAGGAG
TATTCGGACGAGGAGGAGGATAGCGAACTGGAATTCGACGAAGAAGCAGC
TCCTCAGACGAACGGCAAGAGTAATAAGAAGAAGGCAAGCTTTCTAGACC
AT
BO15267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7911-RB | 471 | CG7911-PB | 1..468 | 17..484 | 2340 | 100 | Plus |
CG7911-RA | 471 | CG7911-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7911-RB | 656 | CG7911-RB | 97..564 | 17..484 | 2340 | 100 | Plus |
CG7911-RA | 818 | CG7911-RA | 259..726 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30003988..30004160 | 354..182 | 865 | 100 | Minus |
3R | 32079331 | 3R | 30004303..30004450 | 185..38 | 740 | 100 | Minus |
3R | 32079331 | 3R | 30003773..30003906 | 484..351 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:47:58 has no hits.
BO15267.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:43 Download gff for
BO15267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7911-RB | 79..546 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:44 Download gff for
BO15267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7911-RA | 259..726 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:50 Download gff for
BO15267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7911-RB | 79..546 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:07 Download gff for
BO15267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7911-RA | 259..726 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:07 Download gff for
BO15267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30004582..30004603 | 17..38 | 100 | | Minus |
3R | 30003771..30003904 | 353..486 | 98 | <- | Minus |
3R | 30003990..30004157 | 185..352 | 100 | <- | Minus |
3R | 30004304..30004449 | 39..184 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:44 Download gff for
BO15267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25829493..25829626 | 353..486 | 98 | <- | Minus |
arm_3R | 25829712..25829879 | 185..352 | 100 | <- | Minus |
arm_3R | 25830026..25830171 | 39..184 | 100 | <- | Minus |
arm_3R | 25830304..25830325 | 17..38 | 100 | | Minus |
BO15267.pep Sequence
Translation from 16 to 502
> BO15267.pep
MESESFYGVTLSEKEAIAQFEVPDVPEEYIVHSHKLIIKQISLGPEAKTG
EFNVVQAETNINDDGEKKTLKIPIAVLKVGETRSLRPNVEFPNGSVTFKL
VQGSGPVHVCGKVEMNFGEFDDGQIYEEYSDEEEDSELEFDEEAAPQTNG
KSNKKKASFLDH
BO15267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7911-PB | 156 | CG7911-PB | 1..156 | 1..156 | 804 | 100 | Plus |
CG7911-PA | 156 | CG7911-PA | 1..156 | 1..156 | 804 | 100 | Plus |
Nlp-PB | 152 | CG7917-PB | 1..152 | 1..156 | 283 | 45.7 | Plus |
Nlp-PA | 152 | CG7917-PA | 1..152 | 1..156 | 283 | 45.7 | Plus |