Clone Sequence Records
BO15273.3prime Sequence
803 bp (797 high quality bases) assembled on 2006-06-16
> BO15273.3prime
ATGGTCTAGAAAGCTTGCGTAGTTGTTGTTCACGGGTCCATCGAACGGAC
CCATGCTCTCCCCGAAGTCCTGCATCTCCTCCTCCATGGGATCGTCCAGC
TCGTCGCCCAGTTCGCCCTTTGACTCCGGGCACTTTCTACAGCGGCTCTC
GTTTACGCCGTAGTTGATGCACGTGGATCCCACACATTCGCAGCAGCCGT
CGTGGAACCATCTCGTACTGCTGGCGCCTGTCGTCTGGCAGCTGGTGCGG
CACTTGTTCCACGACACGCACTGATCCAGATATATAACCGTGCAGTTTAC
GGTCACAATGTTGTCACGCTCCTGAATCGCTTCGTCCAGGTTCTTATCAT
TGGTTCTCAAGAAGTAATGACCGTCCTTCTCCAGCTTGGGTCCCTTCAAG
TACTTGTCGAAATCCACTTGAAACGTGAACACGTTCCAGTTGTATCCGAA
GCTGTCGCCCTCATCCGGAGTGGCCACGGCGTTGAAGAGCTCCGGCACTC
CATCGAAATCCTCCACGTGGGACTTCTTGGACAGCGAGTTGCGGGTGTCG
TTGGGCTTCGGACAGAGTTCCACACAGCTGCAGCACTCCTCGTAGTTCTT
GCCCAGGCATTTGAGGCACTCCTTGCAGCAGGAGCAGTTCTTCAGCTCGC
ACTTGCAGCTCTGGGTGAGCATGCACTTGGAGACGATCGAGGCGCAGACG
ACCTCGTTGCAGGACTCCACGGTGCCGTAGAAGCAGACGATGGCCAATAG
CACGATGGTGCCCACTGTGAGCGAGCGCCAAATTTCCATGTCGACTGATA
ACT
BO15273.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12410-PA | 774 | cv-RA | 1..771 | 789..19 | 3855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cv-RC | 1742 | CG12410-RC | 767..1538 | 790..19 | 3860 | 100 | Minus |
cv-RB | 1308 | CG12410-RB | 333..1104 | 790..19 | 3860 | 100 | Minus |
cv-RA | 1893 | CG12410-RA | 607..1378 | 790..19 | 3860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5690768..5690988 | 790..570 | 1105 | 100 | Minus |
X | 23542271 | X | 5691891..5692105 | 570..356 | 1075 | 100 | Minus |
X | 23542271 | X | 5692375..5692569 | 213..19 | 975 | 100 | Minus |
X | 23542271 | X | 5692165..5692309 | 356..212 | 725 | 100 | Minus |
X | 23542271 | X | 11988727..11988837 | 601..711 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:43:43 has no hits.
BO15273.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:44:29 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:27 Download gff for
BO15273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12410-PA | 1..774 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:01:26 Download gff for
BO15273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 603..1383 | 13..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:14:28 Download gff for
BO15273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 603..1383 | 13..793 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:14:28 Download gff for
BO15273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5692377..5692574 | 13..211 | 98 | | Minus |
X | 5690764..5690988 | 570..793 | 99 | -> | Minus |
X | 5691892..5692104 | 357..569 | 100 | -> | Minus |
X | 5692165..5692309 | 212..356 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:01:26 Download gff for
BO15273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5586410..5586607 | 13..211 | 98 | | Minus |
arm_X | 5584797..5585021 | 570..793 | 99 | -> | Minus |
arm_X | 5585925..5586137 | 357..569 | 100 | -> | Minus |
arm_X | 5586198..5586342 | 212..356 | 100 | -> | Minus |
BO15273.5prime Sequence
803 bp (797 high quality bases) assembled on 2006-06-16
> BO15273.5prime
GAAGTTATCAGTCGACATGGAAATTTGGCGCTCGCTCACAGTGGGCACCA
TCGTGCTATTGGCCATCGTCTGCTTCTACGGCACCGTGGAGTCCTGCAAC
GAGGTCGTCTGCGCCTCGATCGTCTCCAAGTGCATGCTCACCCAGAGCTG
CAAGTGCGAGCTGAAGAACTGCTCCTGCTGCAAGGAGTGCCTCAAATGCC
TGGGCAAGAACTACGAGGAGTGCTGCAGCTGTGTGGAACTCTGTCCGAAG
CCCAACGACACCCGCAACTCGCTGTCCAAGAAGTCCCACGTGGAGGATTT
CGATGGAGTGCCGGAGCTCTTCAACGCCGTGGCCACTCCGGATGAGGGCG
ACAGCTTCGGATACAACTGGAACGTGTTCACGTTTCAAGTGGATTTCGAC
AAGTACTTGAAGGGACCCAAGCTGGAGAAGGACGGTCATTACTTCTTGAG
AACCAATGATAAGAACCTGGACGAAGCGATTCAGGAGCGTGACAACATTG
TGACCGTAAACTGCACGGTTATATATCTGGATCAGTGCGTGTCGTGGAAC
AAGTGCCGCACCAGCTGCCAGACGACAGGCGCCAGCAGTACGAGATGGTT
CCACGACGGCTGCTGCGAATGTGTGGGATCCACGTGCATCAACTACGGCG
TAAACGAGAGCCGCTGTAGAAAGTGCCCGGAGTCAAAGGGCGAACTGGGC
GACGAGCTGGACGATCCCATGGAGGAGGAGATGCAGGACTTCGGGGAGAG
CATGGGTCCGTTCGATGGACCCGTGAACAACAACTACGCAAGCTTTCTAG
ACC
BO15273.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12410-PA | 774 | cv-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cv-RC | 1742 | CG12410-RC | 767..1538 | 16..787 | 3860 | 100 | Plus |
cv-RB | 1308 | CG12410-RB | 333..1104 | 16..787 | 3860 | 100 | Plus |
cv-RA | 1893 | CG12410-RA | 607..1378 | 16..787 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5690768..5690988 | 16..236 | 1105 | 100 | Plus |
X | 23542271 | X | 5691891..5692105 | 236..450 | 1075 | 100 | Plus |
X | 23542271 | X | 5692375..5692569 | 593..787 | 975 | 100 | Plus |
X | 23542271 | X | 5692165..5692309 | 450..594 | 725 | 100 | Plus |
X | 23542271 | X | 11988727..11988837 | 205..95 | 210 | 79.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:52:34 has no hits.
BO15273.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:44:30 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:28 Download gff for
BO15273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12410-PA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:07 Download gff for
BO15273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 603..1383 | 13..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:51 Download gff for
BO15273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 603..1383 | 13..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:51 Download gff for
BO15273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5690764..5690988 | 13..236 | 99 | -> | Plus |
X | 5691892..5692104 | 237..449 | 100 | -> | Plus |
X | 5692165..5692309 | 450..594 | 100 | -> | Plus |
X | 5692377..5692574 | 595..793 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:07 Download gff for
BO15273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5584797..5585021 | 13..236 | 99 | -> | Plus |
arm_X | 5585925..5586137 | 237..449 | 100 | -> | Plus |
arm_X | 5586198..5586342 | 450..594 | 100 | -> | Plus |
arm_X | 5586410..5586607 | 595..793 | 98 | | Plus |
BO15273.complete Sequence
805 bp (805 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633394
> BO15273.complete
GAAGTTATCAGTCGACATGGAAATTTGGCGCTCGCTCACAGTGGGCACCA
TCGTGCTATTGGCCATCGTCTGCTTCTACGGCACCGTGGAGTCCTGCAAC
GAGGTCGTCTGCGCCTCGATCGTCTCCAAGTGCATGCTCACCCAGAGCTG
CAAGTGCGAGCTGAAGAACTGCTCCTGCTGCAAGGAGTGCCTCAAATGCC
TGGGCAAGAACTACGAGGAGTGCTGCAGCTGTGTGGAACTCTGTCCGAAG
CCCAACGACACCCGCAACTCGCTGTCCAAGAAGTCCCACGTGGAGGATTT
CGATGGAGTGCCGGAGCTCTTCAACGCCGTGGCCACTCCGGATGAGGGCG
ACAGCTTCGGATACAACTGGAACGTGTTCACGTTTCAAGTGGATTTCGAC
AAGTACTTGAAGGGACCCAAGCTGGAGAAGGACGGTCATTACTTCTTGAG
AACCAATGATAAGAACCTGGACGAAGCGATTCAGGAGCGTGACAACATTG
TGACCGTAAACTGCACGGTTATATATCTGGATCAGTGCGTGTCGTGGAAC
AAGTGCCGCACCAGCTGCCAGACGACAGGCGCCAGCAGTACGAGATGGTT
CCACGACGGCTGCTGCGAATGTGTGGGATCCACGTGCATCAACTACGGCG
TAAACGAGAGCCGCTGTAGAAAGTGCCCGGAGTCAAAGGGCGAACTGGGC
GACGAGCTGGACGATCCCATGGAGGAGGAGATGCAGGACTTCGGGGAGAG
CATGGGTCCGTTCGATGGACCCGTGAACAACAACTACGCAAGCTTTCTAG
ACCAT
BO15273.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cv-RC | 774 | CG12410-PC | 1..771 | 17..787 | 3855 | 100 | Plus |
cv-RB | 774 | CG12410-PB | 1..771 | 17..787 | 3855 | 100 | Plus |
cv-RA | 774 | CG12410-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cv-RC | 1742 | CG12410-RC | 767..1538 | 16..787 | 3860 | 100 | Plus |
cv-RB | 1308 | CG12410-RB | 333..1104 | 16..787 | 3860 | 100 | Plus |
cv-RA | 1893 | CG12410-RA | 607..1378 | 16..787 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5690768..5690988 | 16..236 | 1105 | 100 | Plus |
X | 23542271 | X | 5691891..5692105 | 236..450 | 1075 | 100 | Plus |
X | 23542271 | X | 5692375..5692569 | 593..787 | 975 | 100 | Plus |
X | 23542271 | X | 5692165..5692309 | 450..594 | 725 | 100 | Plus |
X | 23542271 | X | 11988727..11988837 | 205..95 | 210 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:02:57 has no hits.
BO15273.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:06 Download gff for
BO15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:53 Download gff for
BO15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 609..1389 | 13..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:26 Download gff for
BO15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 608..1378 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:06 Download gff for
BO15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 609..1389 | 13..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:09 Download gff for
BO15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cv-RA | 608..1378 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:09 Download gff for
BO15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5692165..5692309 | 450..594 | 100 | -> | Plus |
X | 5692377..5692569 | 595..789 | 98 | | Plus |
X | 5690769..5690988 | 17..236 | 100 | -> | Plus |
X | 5691892..5692104 | 237..449 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:26 Download gff for
BO15273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5584802..5585021 | 17..236 | 100 | -> | Plus |
arm_X | 5585925..5586137 | 237..449 | 100 | -> | Plus |
arm_X | 5586198..5586342 | 450..594 | 100 | -> | Plus |
arm_X | 5586410..5586602 | 595..789 | 98 | | Plus |
BO15273.pep Sequence
Translation from 16 to 805
> BO15273.pep
MEIWRSLTVGTIVLLAIVCFYGTVESCNEVVCASIVSKCMLTQSCKCELK
NCSCCKECLKCLGKNYEECCSCVELCPKPNDTRNSLSKKSHVEDFDGVPE
LFNAVATPDEGDSFGYNWNVFTFQVDFDKYLKGPKLEKDGHYFLRTNDKN
LDEAIQERDNIVTVNCTVIYLDQCVSWNKCRTSCQTTGASSTRWFHDGCC
ECVGSTCINYGVNESRCRKCPESKGELGDELDDPMEEEMQDFGESMGPFD
GPVNNNYASFLDH
BO15273.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cv-PC | 257 | CG12410-PC | 1..257 | 1..257 | 1446 | 100 | Plus |
cv-PB | 257 | CG12410-PB | 1..257 | 1..257 | 1446 | 100 | Plus |
cv-PA | 257 | CG12410-PA | 1..257 | 1..257 | 1446 | 100 | Plus |
tsg-PA | 249 | CG1502-PA | 24..230 | 25..242 | 540 | 43.2 | Plus |
srw-PB | 136 | CG11582-PB | 24..128 | 86..222 | 342 | 48.2 | Plus |