Clone BO15273 Report

Search the DGRC for BO15273

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:152
Well:73
Vector:pDNR-Dual
Associated Gene/Transcriptcv-RA
Protein status:BO15273.pep: validated full length
Sequenced Size:805

Clone Sequence Records

BO15273.3prime Sequence

803 bp (797 high quality bases) assembled on 2006-06-16

> BO15273.3prime
ATGGTCTAGAAAGCTTGCGTAGTTGTTGTTCACGGGTCCATCGAACGGAC
CCATGCTCTCCCCGAAGTCCTGCATCTCCTCCTCCATGGGATCGTCCAGC
TCGTCGCCCAGTTCGCCCTTTGACTCCGGGCACTTTCTACAGCGGCTCTC
GTTTACGCCGTAGTTGATGCACGTGGATCCCACACATTCGCAGCAGCCGT
CGTGGAACCATCTCGTACTGCTGGCGCCTGTCGTCTGGCAGCTGGTGCGG
CACTTGTTCCACGACACGCACTGATCCAGATATATAACCGTGCAGTTTAC
GGTCACAATGTTGTCACGCTCCTGAATCGCTTCGTCCAGGTTCTTATCAT
TGGTTCTCAAGAAGTAATGACCGTCCTTCTCCAGCTTGGGTCCCTTCAAG
TACTTGTCGAAATCCACTTGAAACGTGAACACGTTCCAGTTGTATCCGAA
GCTGTCGCCCTCATCCGGAGTGGCCACGGCGTTGAAGAGCTCCGGCACTC
CATCGAAATCCTCCACGTGGGACTTCTTGGACAGCGAGTTGCGGGTGTCG
TTGGGCTTCGGACAGAGTTCCACACAGCTGCAGCACTCCTCGTAGTTCTT
GCCCAGGCATTTGAGGCACTCCTTGCAGCAGGAGCAGTTCTTCAGCTCGC
ACTTGCAGCTCTGGGTGAGCATGCACTTGGAGACGATCGAGGCGCAGACG
ACCTCGTTGCAGGACTCCACGGTGCCGTAGAAGCAGACGATGGCCAATAG
CACGATGGTGCCCACTGTGAGCGAGCGCCAAATTTCCATGTCGACTGATA
ACT

BO15273.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12410-PA 774 cv-RA 1..771 789..19 3855 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
cv-RC 1742 CG12410-RC 767..1538 790..19 3860 100 Minus
cv-RB 1308 CG12410-RB 333..1104 790..19 3860 100 Minus
cv-RA 1893 CG12410-RA 607..1378 790..19 3860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5690768..5690988 790..570 1105 100 Minus
X 23542271 X 5691891..5692105 570..356 1075 100 Minus
X 23542271 X 5692375..5692569 213..19 975 100 Minus
X 23542271 X 5692165..5692309 356..212 725 100 Minus
X 23542271 X 11988727..11988837 601..711 210 79.3 Plus
Blast to na_te.dros performed on 2015-01-30 18:43:43 has no hits.

BO15273.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:44:29 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:27 Download gff for BO15273.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12410-PA 1..774 16..789 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:01:26 Download gff for BO15273.3prime
Subject Subject Range Query Range Percent Splice Strand
cv-RA 603..1383 13..793 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:14:28 Download gff for BO15273.3prime
Subject Subject Range Query Range Percent Splice Strand
cv-RA 603..1383 13..793 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:14:28 Download gff for BO15273.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5692377..5692574 13..211 98   Minus
X 5690764..5690988 570..793 99 -> Minus
X 5691892..5692104 357..569 100 -> Minus
X 5692165..5692309 212..356 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:01:26 Download gff for BO15273.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5586410..5586607 13..211 98   Minus
arm_X 5584797..5585021 570..793 99 -> Minus
arm_X 5585925..5586137 357..569 100 -> Minus
arm_X 5586198..5586342 212..356 100 -> Minus

BO15273.5prime Sequence

803 bp (797 high quality bases) assembled on 2006-06-16

> BO15273.5prime
GAAGTTATCAGTCGACATGGAAATTTGGCGCTCGCTCACAGTGGGCACCA
TCGTGCTATTGGCCATCGTCTGCTTCTACGGCACCGTGGAGTCCTGCAAC
GAGGTCGTCTGCGCCTCGATCGTCTCCAAGTGCATGCTCACCCAGAGCTG
CAAGTGCGAGCTGAAGAACTGCTCCTGCTGCAAGGAGTGCCTCAAATGCC
TGGGCAAGAACTACGAGGAGTGCTGCAGCTGTGTGGAACTCTGTCCGAAG
CCCAACGACACCCGCAACTCGCTGTCCAAGAAGTCCCACGTGGAGGATTT
CGATGGAGTGCCGGAGCTCTTCAACGCCGTGGCCACTCCGGATGAGGGCG
ACAGCTTCGGATACAACTGGAACGTGTTCACGTTTCAAGTGGATTTCGAC
AAGTACTTGAAGGGACCCAAGCTGGAGAAGGACGGTCATTACTTCTTGAG
AACCAATGATAAGAACCTGGACGAAGCGATTCAGGAGCGTGACAACATTG
TGACCGTAAACTGCACGGTTATATATCTGGATCAGTGCGTGTCGTGGAAC
AAGTGCCGCACCAGCTGCCAGACGACAGGCGCCAGCAGTACGAGATGGTT
CCACGACGGCTGCTGCGAATGTGTGGGATCCACGTGCATCAACTACGGCG
TAAACGAGAGCCGCTGTAGAAAGTGCCCGGAGTCAAAGGGCGAACTGGGC
GACGAGCTGGACGATCCCATGGAGGAGGAGATGCAGGACTTCGGGGAGAG
CATGGGTCCGTTCGATGGACCCGTGAACAACAACTACGCAAGCTTTCTAG
ACC

BO15273.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12410-PA 774 cv-RA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
cv-RC 1742 CG12410-RC 767..1538 16..787 3860 100 Plus
cv-RB 1308 CG12410-RB 333..1104 16..787 3860 100 Plus
cv-RA 1893 CG12410-RA 607..1378 16..787 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5690768..5690988 16..236 1105 100 Plus
X 23542271 X 5691891..5692105 236..450 1075 100 Plus
X 23542271 X 5692375..5692569 593..787 975 100 Plus
X 23542271 X 5692165..5692309 450..594 725 100 Plus
X 23542271 X 11988727..11988837 205..95 210 79.3 Minus
Blast to na_te.dros performed on 2015-02-12 19:52:34 has no hits.

BO15273.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:44:30 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:28 Download gff for BO15273.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12410-PA 1..774 17..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:07 Download gff for BO15273.5prime
Subject Subject Range Query Range Percent Splice Strand
cv-RA 603..1383 13..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:51 Download gff for BO15273.5prime
Subject Subject Range Query Range Percent Splice Strand
cv-RA 603..1383 13..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:51 Download gff for BO15273.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5690764..5690988 13..236 99 -> Plus
X 5691892..5692104 237..449 100 -> Plus
X 5692165..5692309 450..594 100 -> Plus
X 5692377..5692574 595..793 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:07 Download gff for BO15273.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5584797..5585021 13..236 99 -> Plus
arm_X 5585925..5586137 237..449 100 -> Plus
arm_X 5586198..5586342 450..594 100 -> Plus
arm_X 5586410..5586607 595..793 98   Plus

BO15273.complete Sequence

805 bp (805 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633394

> BO15273.complete
GAAGTTATCAGTCGACATGGAAATTTGGCGCTCGCTCACAGTGGGCACCA
TCGTGCTATTGGCCATCGTCTGCTTCTACGGCACCGTGGAGTCCTGCAAC
GAGGTCGTCTGCGCCTCGATCGTCTCCAAGTGCATGCTCACCCAGAGCTG
CAAGTGCGAGCTGAAGAACTGCTCCTGCTGCAAGGAGTGCCTCAAATGCC
TGGGCAAGAACTACGAGGAGTGCTGCAGCTGTGTGGAACTCTGTCCGAAG
CCCAACGACACCCGCAACTCGCTGTCCAAGAAGTCCCACGTGGAGGATTT
CGATGGAGTGCCGGAGCTCTTCAACGCCGTGGCCACTCCGGATGAGGGCG
ACAGCTTCGGATACAACTGGAACGTGTTCACGTTTCAAGTGGATTTCGAC
AAGTACTTGAAGGGACCCAAGCTGGAGAAGGACGGTCATTACTTCTTGAG
AACCAATGATAAGAACCTGGACGAAGCGATTCAGGAGCGTGACAACATTG
TGACCGTAAACTGCACGGTTATATATCTGGATCAGTGCGTGTCGTGGAAC
AAGTGCCGCACCAGCTGCCAGACGACAGGCGCCAGCAGTACGAGATGGTT
CCACGACGGCTGCTGCGAATGTGTGGGATCCACGTGCATCAACTACGGCG
TAAACGAGAGCCGCTGTAGAAAGTGCCCGGAGTCAAAGGGCGAACTGGGC
GACGAGCTGGACGATCCCATGGAGGAGGAGATGCAGGACTTCGGGGAGAG
CATGGGTCCGTTCGATGGACCCGTGAACAACAACTACGCAAGCTTTCTAG
ACCAT

BO15273.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
cv-RC 774 CG12410-PC 1..771 17..787 3855 100 Plus
cv-RB 774 CG12410-PB 1..771 17..787 3855 100 Plus
cv-RA 774 CG12410-PA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
cv-RC 1742 CG12410-RC 767..1538 16..787 3860 100 Plus
cv-RB 1308 CG12410-RB 333..1104 16..787 3860 100 Plus
cv-RA 1893 CG12410-RA 607..1378 16..787 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5690768..5690988 16..236 1105 100 Plus
X 23542271 X 5691891..5692105 236..450 1075 100 Plus
X 23542271 X 5692375..5692569 593..787 975 100 Plus
X 23542271 X 5692165..5692309 450..594 725 100 Plus
X 23542271 X 11988727..11988837 205..95 210 79.3 Minus
Blast to na_te.dros performed on 2014-11-28 01:02:57 has no hits.

BO15273.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:06 Download gff for BO15273.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 1..774 17..790 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:53 Download gff for BO15273.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 609..1389 13..793 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:26 Download gff for BO15273.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 608..1378 17..789 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:06 Download gff for BO15273.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 609..1389 13..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:09 Download gff for BO15273.complete
Subject Subject Range Query Range Percent Splice Strand
cv-RA 608..1378 17..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:09 Download gff for BO15273.complete
Subject Subject Range Query Range Percent Splice Strand
X 5692165..5692309 450..594 100 -> Plus
X 5692377..5692569 595..789 98   Plus
X 5690769..5690988 17..236 100 -> Plus
X 5691892..5692104 237..449 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:26 Download gff for BO15273.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5584802..5585021 17..236 100 -> Plus
arm_X 5585925..5586137 237..449 100 -> Plus
arm_X 5586198..5586342 450..594 100 -> Plus
arm_X 5586410..5586602 595..789 98   Plus

BO15273.pep Sequence

Translation from 16 to 805

> BO15273.pep
MEIWRSLTVGTIVLLAIVCFYGTVESCNEVVCASIVSKCMLTQSCKCELK
NCSCCKECLKCLGKNYEECCSCVELCPKPNDTRNSLSKKSHVEDFDGVPE
LFNAVATPDEGDSFGYNWNVFTFQVDFDKYLKGPKLEKDGHYFLRTNDKN
LDEAIQERDNIVTVNCTVIYLDQCVSWNKCRTSCQTTGASSTRWFHDGCC
ECVGSTCINYGVNESRCRKCPESKGELGDELDDPMEEEMQDFGESMGPFD
GPVNNNYASFLDH

BO15273.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
cv-PC 257 CG12410-PC 1..257 1..257 1446 100 Plus
cv-PB 257 CG12410-PB 1..257 1..257 1446 100 Plus
cv-PA 257 CG12410-PA 1..257 1..257 1446 100 Plus
tsg-PA 249 CG1502-PA 24..230 25..242 540 43.2 Plus
srw-PB 136 CG11582-PB 24..128 86..222 342 48.2 Plus