Clone Sequence Records
BO15295.3prime Sequence
668 bp (667 high quality bases) assembled on 2006-06-16
> BO15295.3prime
ATGGTCTAGAAAGCTTGCCCGATCGGCCCTTATATCCGCCCCCGATTCGT
TATTGGACCGCTCCGGCTGCTCTACCTCGCTGTCTATGTCCCCCTCGTAG
CCCGAATTTGTTTTCGAGGCAACGGGAAGGGGATTGTGCCCTTTAGACAG
GAAGGACTCGTCCAAGGTGCAGCAGCTACAAAAGCACTCCTTAAAATGAC
GGCAGGTATCCCCAAGTTTCTCGGGGGCCGCCTCTAAGACCTTGTTGAAT
GCTTCGATCTTCTCGCGCAGGCTGCGGCTGGCACTGGGACACCCAAAGAG
CTGACTTCCTTGTGGAGACGGCCGTGAAGATTCGCTGCCAATCTTCTCTA
GAAAGCCGAGAACCTTCTCCAGTGAGTCTCGGGCACGTTTGAAGTTCTCC
TGGCTCTCCCGCAGAACTTGGCTTTCATTGAGGTGCTCAAATTCCACCAA
TAGACCTTGAATCTCGGTGAGGTCAGAAGGCAAACTCATGCCCGCCACGG
CGGAGGTTTGCGGGGCGTTCACAGCATTAACCGTCTCGAAACCCACGATC
AGTCGCTGTATCTTGGAGGCCCCGGCGCGGTGGCCACACCTCGCGAGCTG
CATCATGTCGTTCACATCGCCCACCTCCTTGAGCAACTGCACCGACGACT
GCATGTCGACTGATAACT
BO15295.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PA | 792 | CG1971-RA | 154..789 | 654..19 | 3180 | 100 | Minus |
CG1971-PB | 639 | CG1971-RB | 1..636 | 654..19 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RD | 1028 | CG1971-RD | 133..768 | 654..19 | 3180 | 100 | Minus |
CG1971-RC | 1034 | CG1971-RC | 139..774 | 654..19 | 3180 | 100 | Minus |
CG1971-RB | 1106 | CG1971-RB | 211..846 | 654..19 | 3180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805874..31806509 | 654..19 | 3180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:44:40 has no hits.
BO15295.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:46 Download gff for
BO15295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PB | 1..639 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:49 Download gff for
BO15295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PB | 1..639 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:49:36 Download gff for
BO15295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 277..918 | 15..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:03:47 Download gff for
BO15295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RB | 208..849 | 15..660 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:03:47 Download gff for
BO15295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805871..31806512 | 15..660 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:49:36 Download gff for
BO15295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631593..27632234 | 15..660 | 99 | | Minus |
BO15295.5prime Sequence
668 bp (667 high quality bases) assembled on 2006-05-29
> BO15295.5prime
GAAGTTATCAGTCGACATGCAGTCGTCGGTGCAGTTGCTCAAGGAGGTGG
GCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCCGGG
GCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGCTGT
GAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTGACC
TCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAAAGC
CAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTCACT
GGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCACGGC
CGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGCAGC
CTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCCCGA
GAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCTGCT
GCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCCGTT
GCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGTAGA
GCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCGATC
GGGCAAGCTTTCTAGACC
BO15295.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PA | 792 | CG1971-RA | 154..789 | 17..652 | 3180 | 100 | Plus |
CG1971-PB | 639 | CG1971-RB | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RD | 1028 | CG1971-RD | 133..768 | 17..652 | 3180 | 100 | Plus |
CG1971-RC | 1034 | CG1971-RC | 139..774 | 17..652 | 3180 | 100 | Plus |
CG1971-RB | 1106 | CG1971-RB | 211..846 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805874..31806509 | 17..652 | 3180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:03:18 has no hits.
BO15295.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:47 Download gff for
BO15295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PB | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:50 Download gff for
BO15295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PB | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:09 Download gff for
BO15295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 277..918 | 11..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:27 Download gff for
BO15295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RB | 208..849 | 11..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:27 Download gff for
BO15295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805871..31806512 | 11..656 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:09 Download gff for
BO15295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631593..27632234 | 11..656 | 99 | | Plus |
BO15295.complete Sequence
670 bp (670 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633396
> BO15295.complete
GAAGTTATCAGTCGACATGCAGTCGTCGGTGCAGTTGCTCAAGGAGGTGG
GCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCCGGG
GCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGCTGT
GAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTGACC
TCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAAAGC
CAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTCACT
GGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCACGGC
CGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGCAGC
CTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCCCGA
GAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCTGCT
GCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCCGTT
GCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGTAGA
GCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCGATC
GGGCAAGCTTTCTAGACCAT
BO15295.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RD | 639 | CG1971-PD | 1..636 | 17..652 | 3180 | 100 | Plus |
CG1971-RC | 639 | CG1971-PC | 1..636 | 17..652 | 3180 | 100 | Plus |
CG1971-RB | 639 | CG1971-PB | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RD | 1028 | CG1971-RD | 133..768 | 17..652 | 3180 | 100 | Plus |
CG1971-RC | 1034 | CG1971-RC | 139..774 | 17..652 | 3180 | 100 | Plus |
CG1971-RB | 1106 | CG1971-RB | 211..846 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805874..31806509 | 17..652 | 3180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:01:56 has no hits.
BO15295.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:08 Download gff for
BO15295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RB | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:44 Download gff for
BO15295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RB | 136..777 | 11..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:23 Download gff for
BO15295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 280..915 | 17..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:08 Download gff for
BO15295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RB | 136..777 | 11..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:58 Download gff for
BO15295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RB | 211..846 | 17..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:58 Download gff for
BO15295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805874..31806509 | 17..654 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:23 Download gff for
BO15295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631596..27632231 | 17..654 | 99 | | Plus |
BO15295.pep Sequence
Translation from 16 to 670
> BO15295.pep
MQSSVQLLKEVGDVNDMMQLARCGHRAGASKIQRLIVGFETVNAVNAPQT
SAVAGMSLPSDLTEIQGLLVEFEHLNESQVLRESQENFKRARDSLEKVLG
FLEKIGSESSRPSPQGSQLFGCPSASRSLREKIEAFNKVLEAAPEKLGDT
CRHFKECFCSCCTLDESFLSKGHNPLPVASKTNSGYEGDIDSEVEQPERS
NNESGADIRADRASFLDH
BO15295.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PD | 212 | CG1971-PD | 1..212 | 1..212 | 1084 | 100 | Plus |
CG1971-PC | 212 | CG1971-PC | 1..212 | 1..212 | 1084 | 100 | Plus |
CG1971-PB | 212 | CG1971-PB | 1..212 | 1..212 | 1084 | 100 | Plus |
CG1971-PA | 263 | CG1971-PA | 52..263 | 1..212 | 1084 | 100 | Plus |