Clone Sequence Records
BO15301.5prime Sequence
578 bp (577 high quality bases) assembled on 2006-06-16
> BO15301.5prime
GAAGTTATCAGTCGACATGAGCCCCTCAATCAGCGCGGAAGACAAGCTAG
ACTATGTAAAGAGCAAGATTGGCGAGTATCCGAACTTCCCAAAGGAGGGC
ATTCTGTTCCGTGACATATTCGGAGCCCTCACCGATCCGAAGGCATGTGT
GTACTTGCGCGATTTGCTTGTTGATCACATCCGGGAAAGTGCTCCCGAGG
CGGAGGTCATCGTGGGACTGGACTCGCGGGGCTTCCTCTTTAATCTCCTC
ATAGCCACCGAGCTGGGCCTGGGATGTGCTCCGATTCGCAAGAAGGGCAA
GCTGGCGGGAGAAGTGGTTTCCGTGGAATACAAACTGGAGTACGGTATTG
ACACCTTTGAGCTGCAAAAATCCGCCATCAAGCCCGGCCAAAAAGTCGTT
GTCGTTGACGATCTACTAGCCACAGGTGGTTCCCTGGTGGCCGCCACTGA
ACTCATCGGCAAGGTGGGTGGCGTTGTCGTGGAGAGCCTGGTGGTCATGG
AACTAGTTGGACTGGAGGGTCGCAAAAGGCTGGATGGAAAAGTGCATTCC
CTCATTAAGTACGCAAGCTTTCTAGACC
BO15301.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18315-PA | 549 | Aprt-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
CG18315-PB | 99 | Aprt-RB | 1..95 | 17..111 | 475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aprt-RD | 924 | CG18315-RD | 235..780 | 17..562 | 2730 | 100 | Plus |
Aprt-RC | 894 | CG18315-RC | 108..653 | 17..562 | 2730 | 100 | Plus |
Aprt-RA | 797 | CG18315-RA | 108..653 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1884322..1884561 | 350..111 | 1200 | 100 | Minus |
3L | 28110227 | 3L | 1884036..1884248 | 562..350 | 1065 | 100 | Minus |
3L | 28110227 | 3L | 1884691..1884785 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:36:36 has no hits.
BO15301.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:51 Download gff for
BO15301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-PA | 1..549 | 17..565 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:54 Download gff for
BO15301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18315-PA | 1..549 | 17..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:02:06 Download gff for
BO15301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 92..654 | 10..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:47 Download gff for
BO15301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 99..661 | 10..570 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:47 Download gff for
BO15301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1884028..1884248 | 350..570 | 98 | <- | Minus |
3L | 1884323..1884560 | 112..349 | 100 | <- | Minus |
3L | 1884691..1884791 | 10..111 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:02:06 Download gff for
BO15301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1884028..1884248 | 350..570 | 98 | <- | Minus |
arm_3L | 1884323..1884560 | 112..349 | 100 | <- | Minus |
arm_3L | 1884691..1884791 | 10..111 | 96 | | Minus |
BO15301.3prime Sequence
578 bp (577 high quality bases) assembled on 2006-05-29
> BO15301.3prime
ATGGTCTAGAAAGCTTGCGTACTTAATGAGGGAATGCACTTTTCCATCCA
GCCTTTTGCGACCCTCCAGTCCAACTAGTTCCATGACCACCAGGCTCTCC
ACGACAACGCCACCCACCTTGCCGATGAGTTCAGTGGCGGCCACCAGGGA
ACCACCTGTGGCTAGTAGATCGTCAACGACAACGACTTTTTGGCCGGGCT
TGATGGCGGATTTTTGCAGCTCAAAGGTGTCAATACCGTACTCCAGTTTG
TATTCCACGGAAACCACTTCTCCCGCCAGCTTGCCCTTCTTGCGAATCGG
AGCACATCCCAGGCCCAGCTCGGTGGCTATGAGGAGATTAAAGAGGAAGC
CCCGCGAGTCCAGTCCCACGATGACCTCCGCCTCGGGAGCACTTTCCCGG
ATGTGATCAACAAGCAAATCGCGCAAGTACACACATGCCTTCGGATCGGT
GAGGGCTCCGAATATGTCACGGAACAGAATGCCCTCCTTTGGGAAGTTCG
GATACTCGCCAATCTTGCTCTTTACATAGTCTAGCTTGTCTTCCGCGCTG
ATTGAGGGGCTCATGTCGACTGATAACT
BO15301.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18315-PA | 549 | Aprt-RA | 1..546 | 564..19 | 2730 | 100 | Minus |
CG18315-PB | 99 | Aprt-RB | 1..95 | 564..470 | 475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aprt-RD | 924 | CG18315-RD | 235..780 | 564..19 | 2730 | 100 | Minus |
Aprt-RC | 894 | CG18315-RC | 108..653 | 564..19 | 2730 | 100 | Minus |
Aprt-RA | 797 | CG18315-RA | 108..653 | 564..19 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1884322..1884561 | 231..470 | 1200 | 100 | Plus |
3L | 28110227 | 3L | 1884036..1884248 | 19..231 | 1065 | 100 | Plus |
3L | 28110227 | 3L | 1884691..1884785 | 470..564 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:44:12 has no hits.
BO15301.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:50 Download gff for
BO15301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-PA | 1..549 | 16..564 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:53 Download gff for
BO15301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18315-PA | 1..549 | 16..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:49:33 Download gff for
BO15301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 92..654 | 11..571 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:03:43 Download gff for
BO15301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 99..661 | 11..571 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:03:43 Download gff for
BO15301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1884028..1884248 | 11..231 | 98 | <- | Plus |
3L | 1884323..1884560 | 232..469 | 100 | <- | Plus |
3L | 1884691..1884791 | 470..571 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:49:33 Download gff for
BO15301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1884028..1884248 | 11..231 | 98 | <- | Plus |
arm_3L | 1884323..1884560 | 232..469 | 100 | <- | Plus |
arm_3L | 1884691..1884791 | 470..571 | 96 | | Plus |
BO15301.complete Sequence
580 bp (580 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633397
> BO15301.complete
GAAGTTATCAGTCGACATGAGCCCCTCAATCAGCGCGGAAGACAAGCTAG
ACTATGTAAAGAGCAAGATTGGCGAGTATCCGAACTTCCCAAAGGAGGGC
ATTCTGTTCCGTGACATATTCGGAGCCCTCACCGATCCGAAGGCATGTGT
GTACTTGCGCGATTTGCTTGTTGATCACATCCGGGAAAGTGCTCCCGAGG
CGGAGGTCATCGTGGGACTGGACTCGCGGGGCTTCCTCTTTAATCTCCTC
ATAGCCACCGAGCTGGGCCTGGGATGTGCTCCGATTCGCAAGAAGGGCAA
GCTGGCGGGAGAAGTGGTTTCCGTGGAATACAAACTGGAGTACGGTATTG
ACACCTTTGAGCTGCAAAAATCCGCCATCAAGCCCGGCCAAAAAGTCGTT
GTCGTTGACGATCTACTAGCCACAGGTGGTTCCCTGGTGGCCGCCACTGA
ACTCATCGGCAAGGTGGGTGGCGTTGTCGTGGAGAGCCTGGTGGTCATGG
AACTAGTTGGACTGGAGGGTCGCAAAAGGCTGGATGGAAAAGTGCATTCC
CTCATTAAGTACGCAAGCTTTCTAGACCAT
BO15301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aprt-RD | 549 | CG18315-PD | 1..546 | 17..562 | 2730 | 100 | Plus |
Aprt-RC | 549 | CG18315-PC | 1..546 | 17..562 | 2730 | 100 | Plus |
Aprt-RA | 549 | CG18315-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aprt-RD | 924 | CG18315-RD | 235..780 | 17..562 | 2730 | 100 | Plus |
Aprt-RC | 894 | CG18315-RC | 108..653 | 17..562 | 2730 | 100 | Plus |
Aprt-RA | 797 | CG18315-RA | 108..653 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1884322..1884561 | 350..111 | 1200 | 100 | Minus |
3L | 28110227 | 3L | 1884036..1884248 | 562..350 | 1065 | 100 | Minus |
3L | 28110227 | 3L | 1884691..1884785 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:32:22 has no hits.
BO15301.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:24 Download gff for
BO15301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 1..549 | 17..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:45 Download gff for
BO15301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 92..654 | 10..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:24 Download gff for
BO15301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 101..646 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:25 Download gff for
BO15301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 92..654 | 10..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:52 Download gff for
BO15301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aprt-RA | 108..653 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:52 Download gff for
BO15301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1884033..1884248 | 350..564 | 99 | <- | Minus |
3L | 1884323..1884560 | 112..349 | 100 | <- | Minus |
3L | 1884691..1884785 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:24 Download gff for
BO15301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1884033..1884248 | 350..564 | 99 | <- | Minus |
arm_3L | 1884323..1884560 | 112..349 | 100 | <- | Minus |
arm_3L | 1884691..1884785 | 17..111 | 100 | | Minus |
BO15301.pep Sequence
Translation from 16 to 580
> BO15301.pep
MSPSISAEDKLDYVKSKIGEYPNFPKEGILFRDIFGALTDPKACVYLRDL
LVDHIRESAPEAEVIVGLDSRGFLFNLLIATELGLGCAPIRKKGKLAGEV
VSVEYKLEYGIDTFELQKSAIKPGQKVVVVDDLLATGGSLVAATELIGKV
GGVVVESLVVMELVGLEGRKRLDGKVHSLIKYASFLDH
BO15301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aprt-PD | 182 | CG18315-PD | 1..182 | 1..182 | 908 | 100 | Plus |
Aprt-PC | 182 | CG18315-PC | 1..182 | 1..182 | 908 | 100 | Plus |
Aprt-PA | 182 | CG18315-PA | 1..182 | 1..182 | 908 | 100 | Plus |