Clone BO15301 Report

Search the DGRC for BO15301

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptAprt-RA
Protein status:BO15301.pep: validated full length
Sequenced Size:580

Clone Sequence Records

BO15301.5prime Sequence

578 bp (577 high quality bases) assembled on 2006-06-16

> BO15301.5prime
GAAGTTATCAGTCGACATGAGCCCCTCAATCAGCGCGGAAGACAAGCTAG
ACTATGTAAAGAGCAAGATTGGCGAGTATCCGAACTTCCCAAAGGAGGGC
ATTCTGTTCCGTGACATATTCGGAGCCCTCACCGATCCGAAGGCATGTGT
GTACTTGCGCGATTTGCTTGTTGATCACATCCGGGAAAGTGCTCCCGAGG
CGGAGGTCATCGTGGGACTGGACTCGCGGGGCTTCCTCTTTAATCTCCTC
ATAGCCACCGAGCTGGGCCTGGGATGTGCTCCGATTCGCAAGAAGGGCAA
GCTGGCGGGAGAAGTGGTTTCCGTGGAATACAAACTGGAGTACGGTATTG
ACACCTTTGAGCTGCAAAAATCCGCCATCAAGCCCGGCCAAAAAGTCGTT
GTCGTTGACGATCTACTAGCCACAGGTGGTTCCCTGGTGGCCGCCACTGA
ACTCATCGGCAAGGTGGGTGGCGTTGTCGTGGAGAGCCTGGTGGTCATGG
AACTAGTTGGACTGGAGGGTCGCAAAAGGCTGGATGGAAAAGTGCATTCC
CTCATTAAGTACGCAAGCTTTCTAGACC

BO15301.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG18315-PA 549 Aprt-RA 1..546 17..562 2730 100 Plus
CG18315-PB 99 Aprt-RB 1..95 17..111 475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-RD 924 CG18315-RD 235..780 17..562 2730 100 Plus
Aprt-RC 894 CG18315-RC 108..653 17..562 2730 100 Plus
Aprt-RA 797 CG18315-RA 108..653 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1884322..1884561 350..111 1200 100 Minus
3L 28110227 3L 1884036..1884248 562..350 1065 100 Minus
3L 28110227 3L 1884691..1884785 111..17 475 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:36:36 has no hits.

BO15301.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:51 Download gff for BO15301.5prime
Subject Subject Range Query Range Percent Splice Strand
Aprt-PA 1..549 17..565 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:54 Download gff for BO15301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18315-PA 1..549 17..565 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:02:06 Download gff for BO15301.5prime
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 92..654 10..570 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:47 Download gff for BO15301.5prime
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 99..661 10..570 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:47 Download gff for BO15301.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1884028..1884248 350..570 98 <- Minus
3L 1884323..1884560 112..349 100 <- Minus
3L 1884691..1884791 10..111 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:02:06 Download gff for BO15301.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1884028..1884248 350..570 98 <- Minus
arm_3L 1884323..1884560 112..349 100 <- Minus
arm_3L 1884691..1884791 10..111 96   Minus

BO15301.3prime Sequence

578 bp (577 high quality bases) assembled on 2006-05-29

> BO15301.3prime
ATGGTCTAGAAAGCTTGCGTACTTAATGAGGGAATGCACTTTTCCATCCA
GCCTTTTGCGACCCTCCAGTCCAACTAGTTCCATGACCACCAGGCTCTCC
ACGACAACGCCACCCACCTTGCCGATGAGTTCAGTGGCGGCCACCAGGGA
ACCACCTGTGGCTAGTAGATCGTCAACGACAACGACTTTTTGGCCGGGCT
TGATGGCGGATTTTTGCAGCTCAAAGGTGTCAATACCGTACTCCAGTTTG
TATTCCACGGAAACCACTTCTCCCGCCAGCTTGCCCTTCTTGCGAATCGG
AGCACATCCCAGGCCCAGCTCGGTGGCTATGAGGAGATTAAAGAGGAAGC
CCCGCGAGTCCAGTCCCACGATGACCTCCGCCTCGGGAGCACTTTCCCGG
ATGTGATCAACAAGCAAATCGCGCAAGTACACACATGCCTTCGGATCGGT
GAGGGCTCCGAATATGTCACGGAACAGAATGCCCTCCTTTGGGAAGTTCG
GATACTCGCCAATCTTGCTCTTTACATAGTCTAGCTTGTCTTCCGCGCTG
ATTGAGGGGCTCATGTCGACTGATAACT

BO15301.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG18315-PA 549 Aprt-RA 1..546 564..19 2730 100 Minus
CG18315-PB 99 Aprt-RB 1..95 564..470 475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-RD 924 CG18315-RD 235..780 564..19 2730 100 Minus
Aprt-RC 894 CG18315-RC 108..653 564..19 2730 100 Minus
Aprt-RA 797 CG18315-RA 108..653 564..19 2730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1884322..1884561 231..470 1200 100 Plus
3L 28110227 3L 1884036..1884248 19..231 1065 100 Plus
3L 28110227 3L 1884691..1884785 470..564 475 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:44:12 has no hits.

BO15301.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:50 Download gff for BO15301.3prime
Subject Subject Range Query Range Percent Splice Strand
Aprt-PA 1..549 16..564 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:53 Download gff for BO15301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18315-PA 1..549 16..564 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:49:33 Download gff for BO15301.3prime
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 92..654 11..571 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:03:43 Download gff for BO15301.3prime
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 99..661 11..571 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:03:43 Download gff for BO15301.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1884028..1884248 11..231 98 <- Plus
3L 1884323..1884560 232..469 100 <- Plus
3L 1884691..1884791 470..571 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:49:33 Download gff for BO15301.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1884028..1884248 11..231 98 <- Plus
arm_3L 1884323..1884560 232..469 100 <- Plus
arm_3L 1884691..1884791 470..571 96   Plus

BO15301.complete Sequence

580 bp (580 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633397

> BO15301.complete
GAAGTTATCAGTCGACATGAGCCCCTCAATCAGCGCGGAAGACAAGCTAG
ACTATGTAAAGAGCAAGATTGGCGAGTATCCGAACTTCCCAAAGGAGGGC
ATTCTGTTCCGTGACATATTCGGAGCCCTCACCGATCCGAAGGCATGTGT
GTACTTGCGCGATTTGCTTGTTGATCACATCCGGGAAAGTGCTCCCGAGG
CGGAGGTCATCGTGGGACTGGACTCGCGGGGCTTCCTCTTTAATCTCCTC
ATAGCCACCGAGCTGGGCCTGGGATGTGCTCCGATTCGCAAGAAGGGCAA
GCTGGCGGGAGAAGTGGTTTCCGTGGAATACAAACTGGAGTACGGTATTG
ACACCTTTGAGCTGCAAAAATCCGCCATCAAGCCCGGCCAAAAAGTCGTT
GTCGTTGACGATCTACTAGCCACAGGTGGTTCCCTGGTGGCCGCCACTGA
ACTCATCGGCAAGGTGGGTGGCGTTGTCGTGGAGAGCCTGGTGGTCATGG
AACTAGTTGGACTGGAGGGTCGCAAAAGGCTGGATGGAAAAGTGCATTCC
CTCATTAAGTACGCAAGCTTTCTAGACCAT

BO15301.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-RD 549 CG18315-PD 1..546 17..562 2730 100 Plus
Aprt-RC 549 CG18315-PC 1..546 17..562 2730 100 Plus
Aprt-RA 549 CG18315-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-RD 924 CG18315-RD 235..780 17..562 2730 100 Plus
Aprt-RC 894 CG18315-RC 108..653 17..562 2730 100 Plus
Aprt-RA 797 CG18315-RA 108..653 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1884322..1884561 350..111 1200 100 Minus
3L 28110227 3L 1884036..1884248 562..350 1065 100 Minus
3L 28110227 3L 1884691..1884785 111..17 475 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:32:22 has no hits.

BO15301.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:24 Download gff for BO15301.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 1..549 17..565 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:45 Download gff for BO15301.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 92..654 10..570 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:24 Download gff for BO15301.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 101..646 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:25 Download gff for BO15301.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 92..654 10..570 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:52 Download gff for BO15301.complete
Subject Subject Range Query Range Percent Splice Strand
Aprt-RA 108..653 17..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:52 Download gff for BO15301.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1884033..1884248 350..564 99 <- Minus
3L 1884323..1884560 112..349 100 <- Minus
3L 1884691..1884785 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:24 Download gff for BO15301.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1884033..1884248 350..564 99 <- Minus
arm_3L 1884323..1884560 112..349 100 <- Minus
arm_3L 1884691..1884785 17..111 100   Minus

BO15301.pep Sequence

Translation from 16 to 580

> BO15301.pep
MSPSISAEDKLDYVKSKIGEYPNFPKEGILFRDIFGALTDPKACVYLRDL
LVDHIRESAPEAEVIVGLDSRGFLFNLLIATELGLGCAPIRKKGKLAGEV
VSVEYKLEYGIDTFELQKSAIKPGQKVVVVDDLLATGGSLVAATELIGKV
GGVVVESLVVMELVGLEGRKRLDGKVHSLIKYASFLDH

BO15301.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Aprt-PD 182 CG18315-PD 1..182 1..182 908 100 Plus
Aprt-PC 182 CG18315-PC 1..182 1..182 908 100 Plus
Aprt-PA 182 CG18315-PA 1..182 1..182 908 100 Plus