Clone Sequence Records
BO15306.3prime Sequence
443 bp (442 high quality bases) assembled on 2006-06-16
> BO15306.3prime
ATGGTCTAGAAAGCTTGCCTCCTTAATTCCCATTCTGCAGACCGGACAGT
GGCGGCCACCATTAGCCTGGTACTGGTGGAGGCACTTCTCATGCAAGGCG
TGGCTGCAGCGCAGATACACCATGGTGTAAACACTTAGGGGATCTAAACA
AATCGTGCACAAGTCACCGGCTATATTGACATTAACCACCTTATCGCACT
CGAGGCACTTTCTATGGGAATAGCGAAACACCAAGTAGCAGAGATTGTGC
ATGGCATGTCCACACCTCATGCGGCGCCGGTCGTCATCACTCAGTTCATA
CTGGCAAAAGGTGCACCTGCCATTCGGCGACCTGGAGTAAGGCGAACTGC
GGTCGTTATGCCAATTGAAATAGGCGAAAGCGGCAACGGACACCAGGCCC
AAGCCTATTATTAGATTCACGTAGACCATGTCGACTGATAACT
BO15306.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-PA | 414 | CG17721-RA | 1..411 | 429..19 | 2055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-RB | 601 | CG17721-RB | 27..437 | 429..19 | 2055 | 100 | Minus |
CG17721-RA | 844 | CG17721-RA | 270..680 | 429..19 | 2055 | 100 | Minus |
CG17721-RC | 637 | CG17721-RC | 158..473 | 334..19 | 1580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11235598..11235913 | 334..19 | 1580 | 100 | Minus |
3R | 32079331 | 3R | 11235409..11235508 | 429..330 | 500 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 04:25:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ivk | 5402 | Ivk IVK 5402bp | 4466..4528 | 108..171 | 111 | 70.1 | Plus |
BO15306.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:54 Download gff for
BO15306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-PA | 1..414 | 18..429 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:58 Download gff for
BO15306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-PA | 1..414 | 18..429 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:39:08 Download gff for
BO15306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 261..680 | 19..437 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:02 Download gff for
BO15306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 261..680 | 19..437 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:02 Download gff for
BO15306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11235400..11235506 | 332..437 | 96 | -> | Minus |
3R | 11235601..11235916 | 14..331 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:39:08 Download gff for
BO15306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7061122..7061228 | 332..437 | 96 | -> | Minus |
arm_3R | 7061323..7061638 | 14..331 | 99 | -> | Minus |
BO15306.5prime Sequence
443 bp (442 high quality bases) assembled on 2006-06-16
> BO15306.5prime
GAAGTTATCAGTCGACATGGTCTACGTGAATCTAATAATAGGCTTGGGCC
TGGTGTCCGTTGCCGCTTTCGCCTATTTCAATTGGCATAACGACCGCAGT
TCGCCTTACTCCAGGTCGCCGAATGGCAGGTGCACCTTTTGCCAGTATGA
ACTGAGTGATGACGACCGGCGCCGCATGAGGTGTGGACATGCCATGCACA
ATCTCTGCTACTTGGTGTTTCGCTATTCCCATAGAAAGTGCCTCGAGTGC
GATAAGGTGGTTAATGTCAATATAGCCGGTGACTTGTGCACGATTTGTTT
AGATCCCCTAAGTGTTTACACCATGGTGTATCTGCGCTGCAGCCACGCCT
TGCATGAGAAGTGCCTCCACCAGTACCAGGCTAATGGTGGCCGCCACTGT
CCGGTCTGCAGAATGGGAATTAAGGAGGCAAGCTTTCTAGACC
BO15306.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-PA | 414 | CG17721-RA | 1..411 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-RB | 601 | CG17721-RB | 27..437 | 17..427 | 2055 | 100 | Plus |
CG17721-RA | 844 | CG17721-RA | 270..680 | 17..427 | 2055 | 100 | Plus |
CG17721-RC | 637 | CG17721-RC | 158..473 | 112..427 | 1580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11235598..11235913 | 112..427 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 11235409..11235508 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 04:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ivk | 5402 | Ivk IVK 5402bp | 4466..4528 | 338..275 | 111 | 70.1 | Minus |
BO15306.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:55 Download gff for
BO15306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-PA | 1..414 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:00 Download gff for
BO15306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-PA | 1..414 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:39 Download gff for
BO15306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 261..680 | 9..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:12 Download gff for
BO15306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 261..680 | 9..427 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:12 Download gff for
BO15306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11235601..11235913 | 115..427 | 100 | | Plus |
3R | 11235400..11235506 | 9..114 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:39 Download gff for
BO15306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7061122..7061228 | 9..114 | 96 | -> | Plus |
arm_3R | 7061323..7061635 | 115..427 | 100 | | Plus |
BO15306.complete Sequence
445 bp (445 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633399
> BO15306.complete
GAAGTTATCAGTCGACATGGTCTACGTGAATCTAATAATAGGCTTGGGCC
TGGTGTCCGTTGCCGCTTTCGCCTATTTCAATTGGCATAACGACCGCAGT
TCGCCTTACTCCAGGTCGCCGAATGGCAGGTGCACCTTTTGCCAGTATGA
ACTGAGTGATGACGACCGGCGCCGCATGAGGTGTGGACATGCCATGCACA
ATCTCTGCTACTTGGTGTTTCGCTATTCCCATAGAAAGTGCCTCGAGTGC
GATAAGGTGGTTAATGTCAATATAGCCGGTGACTTGTGCACGATTTGTTT
AGATCCCCTAAGTGTTTACACCATGGTGTATCTGCGCTGCAGCCACGCCT
TGCATGAGAAGTGCCTCCACCAGTACCAGGCTAATGGTGGCCGCCACTGT
CCGGTCTGCAGAATGGGAATTAAGGAGGCAAGCTTTCTAGACCAT
BO15306.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-RB | 414 | CG17721-PB | 1..411 | 17..427 | 2055 | 100 | Plus |
CG17721-RA | 414 | CG17721-PA | 1..411 | 17..427 | 2055 | 100 | Plus |
CG17721-RC | 450 | CG17721-PC | 132..447 | 112..427 | 1580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-RB | 601 | CG17721-RB | 27..437 | 17..427 | 2055 | 100 | Plus |
CG17721-RA | 844 | CG17721-RA | 270..680 | 17..427 | 2055 | 100 | Plus |
CG17721-RC | 637 | CG17721-RC | 158..473 | 112..427 | 1580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11235598..11235913 | 112..427 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 11235409..11235508 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ivk | 5402 | Ivk IVK 5402bp | 4466..4528 | 338..275 | 111 | 70.1 | Minus |
BO15306.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:32 Download gff for
BO15306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 1..414 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:01 Download gff for
BO15306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 27..437 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:35 Download gff for
BO15306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 270..680 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:32 Download gff for
BO15306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 18..437 | 9..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:49 Download gff for
BO15306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17721-RA | 270..680 | 17..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:49 Download gff for
BO15306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11235409..11235506 | 17..114 | 100 | -> | Plus |
3R | 11235601..11235913 | 115..429 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:35 Download gff for
BO15306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7061131..7061228 | 17..114 | 100 | -> | Plus |
arm_3R | 7061323..7061635 | 115..429 | 99 | | Plus |
BO15306.pep Sequence
Translation from 16 to 445
> BO15306.pep
MVYVNLIIGLGLVSVAAFAYFNWHNDRSSPYSRSPNGRCTFCQYELSDDD
RRRMRCGHAMHNLCYLVFRYSHRKCLECDKVVNVNIAGDLCTICLDPLSV
YTMVYLRCSHALHEKCLHQYQANGGRHCPVCRMGIKEASFLDH
BO15306.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17721-PB | 137 | CG17721-PB | 1..137 | 1..137 | 771 | 100 | Plus |
CG17721-PA | 137 | CG17721-PA | 1..137 | 1..137 | 771 | 100 | Plus |
CG17721-PC | 149 | CG17721-PC | 1..149 | 1..137 | 748 | 91.9 | Plus |