Clone BO15306 Report

Search the DGRC for BO15306

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG17721-RA
Protein status:BO15306.pep: validated full length
Sequenced Size:445

Clone Sequence Records

BO15306.3prime Sequence

443 bp (442 high quality bases) assembled on 2006-06-16

> BO15306.3prime
ATGGTCTAGAAAGCTTGCCTCCTTAATTCCCATTCTGCAGACCGGACAGT
GGCGGCCACCATTAGCCTGGTACTGGTGGAGGCACTTCTCATGCAAGGCG
TGGCTGCAGCGCAGATACACCATGGTGTAAACACTTAGGGGATCTAAACA
AATCGTGCACAAGTCACCGGCTATATTGACATTAACCACCTTATCGCACT
CGAGGCACTTTCTATGGGAATAGCGAAACACCAAGTAGCAGAGATTGTGC
ATGGCATGTCCACACCTCATGCGGCGCCGGTCGTCATCACTCAGTTCATA
CTGGCAAAAGGTGCACCTGCCATTCGGCGACCTGGAGTAAGGCGAACTGC
GGTCGTTATGCCAATTGAAATAGGCGAAAGCGGCAACGGACACCAGGCCC
AAGCCTATTATTAGATTCACGTAGACCATGTCGACTGATAACT

BO15306.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-PA 414 CG17721-RA 1..411 429..19 2055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-RB 601 CG17721-RB 27..437 429..19 2055 100 Minus
CG17721-RA 844 CG17721-RA 270..680 429..19 2055 100 Minus
CG17721-RC 637 CG17721-RC 158..473 334..19 1580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11235598..11235913 334..19 1580 100 Minus
3R 32079331 3R 11235409..11235508 429..330 500 100 Minus
Blast to na_te.dros performed 2015-02-12 04:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ivk 5402 Ivk IVK 5402bp 4466..4528 108..171 111 70.1 Plus

BO15306.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:54 Download gff for BO15306.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-PA 1..414 18..429 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:46:58 Download gff for BO15306.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-PA 1..414 18..429 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:39:08 Download gff for BO15306.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 261..680 19..437 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:02 Download gff for BO15306.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 261..680 19..437 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:02 Download gff for BO15306.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11235400..11235506 332..437 96 -> Minus
3R 11235601..11235916 14..331 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:39:08 Download gff for BO15306.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7061122..7061228 332..437 96 -> Minus
arm_3R 7061323..7061638 14..331 99 -> Minus

BO15306.5prime Sequence

443 bp (442 high quality bases) assembled on 2006-06-16

> BO15306.5prime
GAAGTTATCAGTCGACATGGTCTACGTGAATCTAATAATAGGCTTGGGCC
TGGTGTCCGTTGCCGCTTTCGCCTATTTCAATTGGCATAACGACCGCAGT
TCGCCTTACTCCAGGTCGCCGAATGGCAGGTGCACCTTTTGCCAGTATGA
ACTGAGTGATGACGACCGGCGCCGCATGAGGTGTGGACATGCCATGCACA
ATCTCTGCTACTTGGTGTTTCGCTATTCCCATAGAAAGTGCCTCGAGTGC
GATAAGGTGGTTAATGTCAATATAGCCGGTGACTTGTGCACGATTTGTTT
AGATCCCCTAAGTGTTTACACCATGGTGTATCTGCGCTGCAGCCACGCCT
TGCATGAGAAGTGCCTCCACCAGTACCAGGCTAATGGTGGCCGCCACTGT
CCGGTCTGCAGAATGGGAATTAAGGAGGCAAGCTTTCTAGACC

BO15306.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-PA 414 CG17721-RA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-RB 601 CG17721-RB 27..437 17..427 2055 100 Plus
CG17721-RA 844 CG17721-RA 270..680 17..427 2055 100 Plus
CG17721-RC 637 CG17721-RC 158..473 112..427 1580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11235598..11235913 112..427 1580 100 Plus
3R 32079331 3R 11235409..11235508 17..116 500 100 Plus
Blast to na_te.dros performed 2015-02-11 04:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ivk 5402 Ivk IVK 5402bp 4466..4528 338..275 111 70.1 Minus

BO15306.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:55 Download gff for BO15306.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-PA 1..414 17..428 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:00 Download gff for BO15306.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-PA 1..414 17..428 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:39 Download gff for BO15306.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 261..680 9..427 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:12 Download gff for BO15306.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 261..680 9..427 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:12 Download gff for BO15306.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11235601..11235913 115..427 100   Plus
3R 11235400..11235506 9..114 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:39 Download gff for BO15306.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7061122..7061228 9..114 96 -> Plus
arm_3R 7061323..7061635 115..427 100   Plus

BO15306.complete Sequence

445 bp (445 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633399

> BO15306.complete
GAAGTTATCAGTCGACATGGTCTACGTGAATCTAATAATAGGCTTGGGCC
TGGTGTCCGTTGCCGCTTTCGCCTATTTCAATTGGCATAACGACCGCAGT
TCGCCTTACTCCAGGTCGCCGAATGGCAGGTGCACCTTTTGCCAGTATGA
ACTGAGTGATGACGACCGGCGCCGCATGAGGTGTGGACATGCCATGCACA
ATCTCTGCTACTTGGTGTTTCGCTATTCCCATAGAAAGTGCCTCGAGTGC
GATAAGGTGGTTAATGTCAATATAGCCGGTGACTTGTGCACGATTTGTTT
AGATCCCCTAAGTGTTTACACCATGGTGTATCTGCGCTGCAGCCACGCCT
TGCATGAGAAGTGCCTCCACCAGTACCAGGCTAATGGTGGCCGCCACTGT
CCGGTCTGCAGAATGGGAATTAAGGAGGCAAGCTTTCTAGACCAT

BO15306.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-RB 414 CG17721-PB 1..411 17..427 2055 100 Plus
CG17721-RA 414 CG17721-PA 1..411 17..427 2055 100 Plus
CG17721-RC 450 CG17721-PC 132..447 112..427 1580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-RB 601 CG17721-RB 27..437 17..427 2055 100 Plus
CG17721-RA 844 CG17721-RA 270..680 17..427 2055 100 Plus
CG17721-RC 637 CG17721-RC 158..473 112..427 1580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11235598..11235913 112..427 1580 100 Plus
3R 32079331 3R 11235409..11235508 17..116 500 100 Plus
Blast to na_te.dros performed 2014-11-28 08:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Ivk 5402 Ivk IVK 5402bp 4466..4528 338..275 111 70.1 Minus

BO15306.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:32 Download gff for BO15306.complete
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 1..414 17..428 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:01 Download gff for BO15306.complete
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 27..437 17..429 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:35 Download gff for BO15306.complete
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 270..680 17..429 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:32 Download gff for BO15306.complete
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 18..437 9..427 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:49 Download gff for BO15306.complete
Subject Subject Range Query Range Percent Splice Strand
CG17721-RA 270..680 17..429 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:49 Download gff for BO15306.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11235409..11235506 17..114 100 -> Plus
3R 11235601..11235913 115..429 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:35 Download gff for BO15306.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7061131..7061228 17..114 100 -> Plus
arm_3R 7061323..7061635 115..429 99   Plus

BO15306.pep Sequence

Translation from 16 to 445

> BO15306.pep
MVYVNLIIGLGLVSVAAFAYFNWHNDRSSPYSRSPNGRCTFCQYELSDDD
RRRMRCGHAMHNLCYLVFRYSHRKCLECDKVVNVNIAGDLCTICLDPLSV
YTMVYLRCSHALHEKCLHQYQANGGRHCPVCRMGIKEASFLDH

BO15306.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17721-PB 137 CG17721-PB 1..137 1..137 771 100 Plus
CG17721-PA 137 CG17721-PA 1..137 1..137 771 100 Plus
CG17721-PC 149 CG17721-PC 1..149 1..137 748 91.9 Plus