Clone BO15312 Report

Search the DGRC for BO15312

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptdpr19-RA
Protein status:BO15312.pep: validated full length
Sequenced Size:1189

Clone Sequence Records

BO15312.3prime Sequence

851 bp (728 high quality bases) assembled on 2006-06-16

> BO15312.3prime
ATGGTCTAGAAAGCTTGCGCTATGCATAGTGACTATTATAAATGCTACGA
ATACCTTGTGAGTTGCCGCCAACGAGAATCGATCGAATACCACCGCGCCC
ATCAGCAGGAACAGCCCAGAGAAGTAGAGGATTCCCCCGGCCAGAGTTAC
GCCGCTAGTTCCATTCAGTCCACCCAATGTGATCAATCCGAAGGTGCCGT
TGCCGTTGGTCTCCGTATCCAAAATGCTCCGATTGGCGTGCTGCATGGCC
GCCGTTTTCTCACCCCTTAGAACATGCACTGTAATGCTGGCAGGACGGGC
ATTTGATGGAGCACATGTATAGTTGCCGGCATGACGGAAATTGACTTGCT
TCACAGTAAGCACACTGACCGAGGGATTCAGGAGATAGGCGGATTGATGC
TGTTGCGTCATATAGGGCGTGGAGGAGGGCACATTGGCGGCCGGTGCCTT
GATAGCATCCGAGCTGCCCAGCAGGCTGTTGAGCACCCCATTGCTGGACT
CCATGGGCATGGTGGCGCGCGATTTGTTCGCCGGCGAGCTACGGTAAAAC
TGGCCACTCTGCGGATTGCTTTGCCCAATCGATGTCACAACGAAGCCGCC
TTGTGAGTCGTAATTGATCATTTTACTATCATGGTACCAAAAAACAAATG
CAGGATTCTCGGTAGCTCGCTTCAGTTTGCATTCGAGTCGCAGAGTAGAA
GTCTCATCAATATGCAATTCCGGTGCACTAGGAATCTCAGCTACCGCTTC
GACAATCTTTAATTCTATAACTATTGACTGAGTTGGATAAATAGACAATT
GACACTCGTAAAAACCGCGATCTTCCTCCCCAACTGGCTTAATTCTCAGG
G

BO15312.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13140-PA 1158 dpr19-RA 323..1155 851..19 4090 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
dpr19-RC 2162 CG13140-RC 592..1424 851..19 4120 99.6 Minus
dpr19-RB 2353 CG13140-RB 783..1615 851..19 4120 99.6 Minus
dpr19-RA 2374 CG13140-RA 804..1636 851..19 4120 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10378486..10378870 642..258 1895 99.5 Minus
2L 23513712 2L 10378922..10379167 264..19 1230 100 Minus
2L 23513712 2L 10378287..10378402 750..635 565 99.1 Minus
2L 23513712 2L 10378120..10378221 851..750 480 98 Minus
Blast to na_te.dros performed on 2015-02-10 22:39:22 has no hits.

BO15312.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:57 Download gff for BO15312.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr19-PA 323..1158 16..851 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:03 Download gff for BO15312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13140-PA 323..1158 16..851 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:12:52 Download gff for BO15312.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 804..1647 7..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:03 Download gff for BO15312.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 804..1647 7..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:03 Download gff for BO15312.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10378120..10378221 750..851 98 -> Minus
2L 10378288..10378399 638..749 99 -> Minus
2L 10378491..10378864 264..637 100 -> Minus
2L 10378923..10379178 7..263 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:12:52 Download gff for BO15312.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10378120..10378221 750..851 98 -> Minus
arm_2L 10378288..10378399 638..749 99 -> Minus
arm_2L 10378491..10378864 264..637 100 -> Minus
arm_2L 10378923..10379178 7..263 98   Minus

BO15312.5prime Sequence

784 bp (708 high quality bases) assembled on 2006-05-29

> BO15312.5prime
GAAGTTATCAGTCGACATGGAACCGAAAAGATGGCACTTGCATTTATCAT
GTTTTTTGCTACTCCTTAGTTCAACTTTTTCTGATGTCGGGAAGATCACT
GCNTCTCNNNNTCNTTTTGGTNNCNCCTTNCNNNGTTCTTTTNNTNCGAA
GAACAACACTCGAGTTATTGCACAAAAGGGAGGACTTGCCATTCTGCCCT
GTGTGGTCAAAGTTAACTCCCCAGCCACGGTTTCCTGGATACGTAGAAAG
GACTTCCAGCTCCTGACAGTGGGCCTATCCACCCACAGTAGTGACAAGCG
ATTCTTGGTGGAGCACACGCGGCACATGGGCCACTGGTCCCTGAGAATTA
AGGCAGTTCGGGAGGAAGATCGCGGTTTTTACGAGTGTCAATTGTCTATT
TATCCAACTCAGTCAATAGTTATAGAATTAAAGATTGTCGAAGCGGTAGC
TGAGATTTCTAGTGCACCGGAATTGCATATTGATGAGACTTCTACTCTGC
GACTCGAATGCAAACTGAAGCGAGCTACCGAGAATCCTGCATTTGTTTTT
TGGTACCATGATAGTAAAATGATCAATTACGACTCACATGGCGGCTTCGT
TGTGACATCGATTGGGCAAAGCAATCCGCAGAGTGGCCCGTTTTACCGTA
GCTCGCCGGCGAACAAATCGCGCGCCACCATGCCCCTGGAGTCCAGCAAT
GGGGTGCTCAACGGCCTGCTGGGCAGCTCGGATGCTATCAAGGCCCCGGC
CGCCAATGTGGCCTCCTCCCCGCCCTATATGACG

BO15312.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13140-PA 1158 dpr19-RA 131..768 147..784 3015 98.9 Plus
CG13140-PA 1158 dpr19-RA 1..84 17..100 420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
dpr19-RC 2162 CG13140-RC 270..1037 17..784 3499 96.5 Plus
dpr19-RB 2353 CG13140-RB 461..1228 17..784 3499 96.5 Plus
dpr19-RA 2374 CG13140-RA 482..1249 17..784 3499 96.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10378486..10378722 548..784 1065 96.6 Plus
2L 23513712 2L 10378010..10378221 229..440 1060 100 Plus
2L 23513712 2L 10378287..10378402 440..555 580 100 Plus
2L 23513712 2L 10377791..10377944 78..231 519 86.4 Plus
2L 23513712 2L 10377322..10377388 17..83 335 100 Plus
Blast to na_te.dros performed on 2015-02-02 07:47:05 has no hits.

BO15312.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:58 Download gff for BO15312.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr19-PA 1..768 17..784 96   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:04 Download gff for BO15312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13140-PA 1..768 17..784 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:02 Download gff for BO15312.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 482..1249 17..784 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:58 Download gff for BO15312.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 482..1249 17..784 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:58 Download gff for BO15312.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10377797..10377942 84..229 86 -> Plus
2L 10377322..10377388 17..83 100 -> Plus
2L 10378011..10378221 230..440 100 -> Plus
2L 10378288..10378399 441..552 100 -> Plus
2L 10378491..10378722 553..784 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:02 Download gff for BO15312.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10377322..10377388 17..83 100 -> Plus
arm_2L 10377797..10377942 84..229 86 -> Plus
arm_2L 10378011..10378221 230..440 100 -> Plus
arm_2L 10378288..10378399 441..552 100 -> Plus
arm_2L 10378491..10378722 553..784 96   Plus

BO15312.complete Sequence

1189 bp (1189 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633400

> BO15312.complete
GAAGTTATCAGTCGACATGGAACCGAAAAGATGGCACTTGCATTTATCAT
GTTTTTTGCTACTCCTTAGTTCAACTTTTTCTGATGTCGGGAAGATCACT
TCGTCTCAAAATCATTTTGGTAACACCTTACAAAGTCAATTTAATACGAA
GAACAACACTCGAGTTATTGCACAAAAGGGAGGACTTGCCATTCTGCCCT
GTGTGGTCAAAGTTAACTCCCCAGCCACGGTTTCCTGGATACGTAGAAAG
GACTTCCAGCTCCTGACAGTGGGCCTATCCACCCACAGTAGTGACAAGCG
ATTCTTGGTGGAGCACACGCGGCACATGGGCCACTGGTCCCTGAGAATTA
AGGCAGTTCGGGAGGAAGATCGCGGTTTTTACGAGTGTCAATTGTCTATT
TATCCAACTCAGTCAATAGTTATAGAATTAAAGATTGTCGAAGCGGTAGC
TGAGATTTCTAGTGCACCGGAATTGCATATTGATGAGACTTCTACTCTGC
GACTCGAATGCAAACTGAAGCGAGCTACCGAGAATCCTGCATTTGTTTTT
TGGTACCATGATAGTAAAATGATCAATTACGACTCACAAGGCGGCTTCGT
TGTGACATCGATTGGGCAAAGCAATCCGCAGAGTGGCCAGTTTTACCGTA
GCTCGCCGGCGAACAAATCGCGCGCCACCATGCCCATGGAGTCCAGCAAT
GGGGTGCTCAACAGCCTGCTGGGCAGCTCGGATGCTATCAAGGCACCGGC
CGCCAATGTGCCCTCCTCCACGCCCTATATGACGCAACAGCATCAATCCG
CCTATCTCCTGAATCCCTCGGTCAGTGTGCTTACTGTGAAGCAAGTCAAT
TTCCGTCATGCCGGCAACTATACATGTGCTCCATCAAATGCCCGTCCTGC
CAGCATTACAGTGCATGTTCTAAGGGGTGAGAAAACGGCGGCCATGCAGC
ACGCCAATCGGAGCATTTTGGATACGGAGACCAACGGCAACGGCACCTTC
GGATTGATCACATTGGGTGGACTGAATGGAACTAGCGGCGTAACTCTGGC
CGGGGGAATCCTCTACTTCTCTGGGCTGTTCCTGCTGATGGGCGCGGTGG
TATTCGATCGATTCTCGTTGGCGGCAACTCACAAGGTATTCGTAGCATTT
ATAATAGTCACTATGCATAGCGCAAGCTTTCTAGACCAT

BO15312.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
dpr19-RC 1158 CG13140-PC 1..1155 17..1171 5775 100 Plus
dpr19-RB 1158 CG13140-PB 1..1155 17..1171 5775 100 Plus
dpr19-RA 1158 CG13140-PA 1..1155 17..1171 5775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
dpr19-RC 2162 CG13140-RC 270..1424 17..1171 5775 100 Plus
dpr19-RB 2353 CG13140-RB 461..1615 17..1171 5775 100 Plus
dpr19-RA 2374 CG13140-RA 482..1636 17..1171 5775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10378486..10378870 548..932 1895 99.5 Plus
2L 23513712 2L 10378922..10379167 926..1171 1230 100 Plus
2L 23513712 2L 10378010..10378221 229..440 1060 100 Plus
2L 23513712 2L 10377791..10377944 78..231 755 99.4 Plus
2L 23513712 2L 10378287..10378402 440..555 580 100 Plus
2L 23513712 2L 10377322..10377388 17..83 335 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:14:51 has no hits.

BO15312.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:34 Download gff for BO15312.complete
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 1..1158 17..1174 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:50 Download gff for BO15312.complete
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 468..1633 17..1183 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:44 Download gff for BO15312.complete
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 482..1636 17..1173 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:35 Download gff for BO15312.complete
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 468..1633 17..1183 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:47 Download gff for BO15312.complete
Subject Subject Range Query Range Percent Splice Strand
dpr19-RA 482..1636 17..1173 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:47 Download gff for BO15312.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10377322..10377388 17..83 100 -> Plus
2L 10377797..10377942 84..229 100 -> Plus
2L 10378011..10378221 230..440 100 -> Plus
2L 10378288..10378399 441..552 100 -> Plus
2L 10378491..10378864 553..926 100 -> Plus
2L 10378923..10379167 927..1173 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:44 Download gff for BO15312.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10377797..10377942 84..229 100 -> Plus
arm_2L 10377322..10377388 17..83 100 -> Plus
arm_2L 10378011..10378221 230..440 100 -> Plus
arm_2L 10378288..10378399 441..552 100 -> Plus
arm_2L 10378491..10378864 553..926 100 -> Plus
arm_2L 10378923..10379167 927..1173 99   Plus

BO15312.pep Sequence

Translation from 16 to 1189

> BO15312.pep
MEPKRWHLHLSCFLLLLSSTFSDVGKITSSQNHFGNTLQSQFNTKNNTRV
IAQKGGLAILPCVVKVNSPATVSWIRRKDFQLLTVGLSTHSSDKRFLVEH
TRHMGHWSLRIKAVREEDRGFYECQLSIYPTQSIVIELKIVEAVAEISSA
PELHIDETSTLRLECKLKRATENPAFVFWYHDSKMINYDSQGGFVVTSIG
QSNPQSGQFYRSSPANKSRATMPMESSNGVLNSLLGSSDAIKAPAANVPS
STPYMTQQHQSAYLLNPSVSVLTVKQVNFRHAGNYTCAPSNARPASITVH
VLRGEKTAAMQHANRSILDTETNGNGTFGLITLGGLNGTSGVTLAGGILY
FSGLFLLMGAVVFDRFSLAATHKVFVAFIIVTMHSASFLDH

BO15312.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
dpr19-PC 385 CG13140-PC 1..385 1..385 1981 100 Plus
dpr19-PB 385 CG13140-PB 1..385 1..385 1981 100 Plus
dpr19-PA 385 CG13140-PA 1..385 1..385 1981 100 Plus
dpr13-PB 419 CG33996-PB 177..333 42..198 393 47.8 Plus
dpr13-PC 418 CG33996-PC 177..332 42..198 376 47.1 Plus