Clone Sequence Records
BO15312.3prime Sequence
851 bp (728 high quality bases) assembled on 2006-06-16
> BO15312.3prime
ATGGTCTAGAAAGCTTGCGCTATGCATAGTGACTATTATAAATGCTACGA
ATACCTTGTGAGTTGCCGCCAACGAGAATCGATCGAATACCACCGCGCCC
ATCAGCAGGAACAGCCCAGAGAAGTAGAGGATTCCCCCGGCCAGAGTTAC
GCCGCTAGTTCCATTCAGTCCACCCAATGTGATCAATCCGAAGGTGCCGT
TGCCGTTGGTCTCCGTATCCAAAATGCTCCGATTGGCGTGCTGCATGGCC
GCCGTTTTCTCACCCCTTAGAACATGCACTGTAATGCTGGCAGGACGGGC
ATTTGATGGAGCACATGTATAGTTGCCGGCATGACGGAAATTGACTTGCT
TCACAGTAAGCACACTGACCGAGGGATTCAGGAGATAGGCGGATTGATGC
TGTTGCGTCATATAGGGCGTGGAGGAGGGCACATTGGCGGCCGGTGCCTT
GATAGCATCCGAGCTGCCCAGCAGGCTGTTGAGCACCCCATTGCTGGACT
CCATGGGCATGGTGGCGCGCGATTTGTTCGCCGGCGAGCTACGGTAAAAC
TGGCCACTCTGCGGATTGCTTTGCCCAATCGATGTCACAACGAAGCCGCC
TTGTGAGTCGTAATTGATCATTTTACTATCATGGTACCAAAAAACAAATG
CAGGATTCTCGGTAGCTCGCTTCAGTTTGCATTCGAGTCGCAGAGTAGAA
GTCTCATCAATATGCAATTCCGGTGCACTAGGAATCTCAGCTACCGCTTC
GACAATCTTTAATTCTATAACTATTGACTGAGTTGGATAAATAGACAATT
GACACTCGTAAAAACCGCGATCTTCCTCCCCAACTGGCTTAATTCTCAGG
G
BO15312.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13140-PA | 1158 | dpr19-RA | 323..1155 | 851..19 | 4090 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr19-RC | 2162 | CG13140-RC | 592..1424 | 851..19 | 4120 | 99.6 | Minus |
dpr19-RB | 2353 | CG13140-RB | 783..1615 | 851..19 | 4120 | 99.6 | Minus |
dpr19-RA | 2374 | CG13140-RA | 804..1636 | 851..19 | 4120 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10378486..10378870 | 642..258 | 1895 | 99.5 | Minus |
2L | 23513712 | 2L | 10378922..10379167 | 264..19 | 1230 | 100 | Minus |
2L | 23513712 | 2L | 10378287..10378402 | 750..635 | 565 | 99.1 | Minus |
2L | 23513712 | 2L | 10378120..10378221 | 851..750 | 480 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:39:22 has no hits.
BO15312.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:57 Download gff for
BO15312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-PA | 323..1158 | 16..851 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:03 Download gff for
BO15312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13140-PA | 323..1158 | 16..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:12:52 Download gff for
BO15312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 804..1647 | 7..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:03 Download gff for
BO15312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 804..1647 | 7..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:03 Download gff for
BO15312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10378120..10378221 | 750..851 | 98 | -> | Minus |
2L | 10378288..10378399 | 638..749 | 99 | -> | Minus |
2L | 10378491..10378864 | 264..637 | 100 | -> | Minus |
2L | 10378923..10379178 | 7..263 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:12:52 Download gff for
BO15312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10378120..10378221 | 750..851 | 98 | -> | Minus |
arm_2L | 10378288..10378399 | 638..749 | 99 | -> | Minus |
arm_2L | 10378491..10378864 | 264..637 | 100 | -> | Minus |
arm_2L | 10378923..10379178 | 7..263 | 98 | | Minus |
BO15312.5prime Sequence
784 bp (708 high quality bases) assembled on 2006-05-29
> BO15312.5prime
GAAGTTATCAGTCGACATGGAACCGAAAAGATGGCACTTGCATTTATCAT
GTTTTTTGCTACTCCTTAGTTCAACTTTTTCTGATGTCGGGAAGATCACT
GCNTCTCNNNNTCNTTTTGGTNNCNCCTTNCNNNGTTCTTTTNNTNCGAA
GAACAACACTCGAGTTATTGCACAAAAGGGAGGACTTGCCATTCTGCCCT
GTGTGGTCAAAGTTAACTCCCCAGCCACGGTTTCCTGGATACGTAGAAAG
GACTTCCAGCTCCTGACAGTGGGCCTATCCACCCACAGTAGTGACAAGCG
ATTCTTGGTGGAGCACACGCGGCACATGGGCCACTGGTCCCTGAGAATTA
AGGCAGTTCGGGAGGAAGATCGCGGTTTTTACGAGTGTCAATTGTCTATT
TATCCAACTCAGTCAATAGTTATAGAATTAAAGATTGTCGAAGCGGTAGC
TGAGATTTCTAGTGCACCGGAATTGCATATTGATGAGACTTCTACTCTGC
GACTCGAATGCAAACTGAAGCGAGCTACCGAGAATCCTGCATTTGTTTTT
TGGTACCATGATAGTAAAATGATCAATTACGACTCACATGGCGGCTTCGT
TGTGACATCGATTGGGCAAAGCAATCCGCAGAGTGGCCCGTTTTACCGTA
GCTCGCCGGCGAACAAATCGCGCGCCACCATGCCCCTGGAGTCCAGCAAT
GGGGTGCTCAACGGCCTGCTGGGCAGCTCGGATGCTATCAAGGCCCCGGC
CGCCAATGTGGCCTCCTCCCCGCCCTATATGACG
BO15312.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13140-PA | 1158 | dpr19-RA | 131..768 | 147..784 | 3015 | 98.9 | Plus |
CG13140-PA | 1158 | dpr19-RA | 1..84 | 17..100 | 420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr19-RC | 2162 | CG13140-RC | 270..1037 | 17..784 | 3499 | 96.5 | Plus |
dpr19-RB | 2353 | CG13140-RB | 461..1228 | 17..784 | 3499 | 96.5 | Plus |
dpr19-RA | 2374 | CG13140-RA | 482..1249 | 17..784 | 3499 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10378486..10378722 | 548..784 | 1065 | 96.6 | Plus |
2L | 23513712 | 2L | 10378010..10378221 | 229..440 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 10378287..10378402 | 440..555 | 580 | 100 | Plus |
2L | 23513712 | 2L | 10377791..10377944 | 78..231 | 519 | 86.4 | Plus |
2L | 23513712 | 2L | 10377322..10377388 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 07:47:05 has no hits.
BO15312.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:44:58 Download gff for
BO15312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-PA | 1..768 | 17..784 | 96 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:04 Download gff for
BO15312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13140-PA | 1..768 | 17..784 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:02 Download gff for
BO15312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 482..1249 | 17..784 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:58 Download gff for
BO15312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 482..1249 | 17..784 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:58 Download gff for
BO15312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10377797..10377942 | 84..229 | 86 | -> | Plus |
2L | 10377322..10377388 | 17..83 | 100 | -> | Plus |
2L | 10378011..10378221 | 230..440 | 100 | -> | Plus |
2L | 10378288..10378399 | 441..552 | 100 | -> | Plus |
2L | 10378491..10378722 | 553..784 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:02 Download gff for
BO15312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10377322..10377388 | 17..83 | 100 | -> | Plus |
arm_2L | 10377797..10377942 | 84..229 | 86 | -> | Plus |
arm_2L | 10378011..10378221 | 230..440 | 100 | -> | Plus |
arm_2L | 10378288..10378399 | 441..552 | 100 | -> | Plus |
arm_2L | 10378491..10378722 | 553..784 | 96 | | Plus |
BO15312.complete Sequence
1189 bp (1189 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633400
> BO15312.complete
GAAGTTATCAGTCGACATGGAACCGAAAAGATGGCACTTGCATTTATCAT
GTTTTTTGCTACTCCTTAGTTCAACTTTTTCTGATGTCGGGAAGATCACT
TCGTCTCAAAATCATTTTGGTAACACCTTACAAAGTCAATTTAATACGAA
GAACAACACTCGAGTTATTGCACAAAAGGGAGGACTTGCCATTCTGCCCT
GTGTGGTCAAAGTTAACTCCCCAGCCACGGTTTCCTGGATACGTAGAAAG
GACTTCCAGCTCCTGACAGTGGGCCTATCCACCCACAGTAGTGACAAGCG
ATTCTTGGTGGAGCACACGCGGCACATGGGCCACTGGTCCCTGAGAATTA
AGGCAGTTCGGGAGGAAGATCGCGGTTTTTACGAGTGTCAATTGTCTATT
TATCCAACTCAGTCAATAGTTATAGAATTAAAGATTGTCGAAGCGGTAGC
TGAGATTTCTAGTGCACCGGAATTGCATATTGATGAGACTTCTACTCTGC
GACTCGAATGCAAACTGAAGCGAGCTACCGAGAATCCTGCATTTGTTTTT
TGGTACCATGATAGTAAAATGATCAATTACGACTCACAAGGCGGCTTCGT
TGTGACATCGATTGGGCAAAGCAATCCGCAGAGTGGCCAGTTTTACCGTA
GCTCGCCGGCGAACAAATCGCGCGCCACCATGCCCATGGAGTCCAGCAAT
GGGGTGCTCAACAGCCTGCTGGGCAGCTCGGATGCTATCAAGGCACCGGC
CGCCAATGTGCCCTCCTCCACGCCCTATATGACGCAACAGCATCAATCCG
CCTATCTCCTGAATCCCTCGGTCAGTGTGCTTACTGTGAAGCAAGTCAAT
TTCCGTCATGCCGGCAACTATACATGTGCTCCATCAAATGCCCGTCCTGC
CAGCATTACAGTGCATGTTCTAAGGGGTGAGAAAACGGCGGCCATGCAGC
ACGCCAATCGGAGCATTTTGGATACGGAGACCAACGGCAACGGCACCTTC
GGATTGATCACATTGGGTGGACTGAATGGAACTAGCGGCGTAACTCTGGC
CGGGGGAATCCTCTACTTCTCTGGGCTGTTCCTGCTGATGGGCGCGGTGG
TATTCGATCGATTCTCGTTGGCGGCAACTCACAAGGTATTCGTAGCATTT
ATAATAGTCACTATGCATAGCGCAAGCTTTCTAGACCAT
BO15312.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr19-RC | 1158 | CG13140-PC | 1..1155 | 17..1171 | 5775 | 100 | Plus |
dpr19-RB | 1158 | CG13140-PB | 1..1155 | 17..1171 | 5775 | 100 | Plus |
dpr19-RA | 1158 | CG13140-PA | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr19-RC | 2162 | CG13140-RC | 270..1424 | 17..1171 | 5775 | 100 | Plus |
dpr19-RB | 2353 | CG13140-RB | 461..1615 | 17..1171 | 5775 | 100 | Plus |
dpr19-RA | 2374 | CG13140-RA | 482..1636 | 17..1171 | 5775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10378486..10378870 | 548..932 | 1895 | 99.5 | Plus |
2L | 23513712 | 2L | 10378922..10379167 | 926..1171 | 1230 | 100 | Plus |
2L | 23513712 | 2L | 10378010..10378221 | 229..440 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 10377791..10377944 | 78..231 | 755 | 99.4 | Plus |
2L | 23513712 | 2L | 10378287..10378402 | 440..555 | 580 | 100 | Plus |
2L | 23513712 | 2L | 10377322..10377388 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:14:51 has no hits.
BO15312.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:34 Download gff for
BO15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 1..1158 | 17..1174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:50 Download gff for
BO15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 468..1633 | 17..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:44 Download gff for
BO15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 482..1636 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:35 Download gff for
BO15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 468..1633 | 17..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:47 Download gff for
BO15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr19-RA | 482..1636 | 17..1173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:47 Download gff for
BO15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10377322..10377388 | 17..83 | 100 | -> | Plus |
2L | 10377797..10377942 | 84..229 | 100 | -> | Plus |
2L | 10378011..10378221 | 230..440 | 100 | -> | Plus |
2L | 10378288..10378399 | 441..552 | 100 | -> | Plus |
2L | 10378491..10378864 | 553..926 | 100 | -> | Plus |
2L | 10378923..10379167 | 927..1173 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:44 Download gff for
BO15312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10377797..10377942 | 84..229 | 100 | -> | Plus |
arm_2L | 10377322..10377388 | 17..83 | 100 | -> | Plus |
arm_2L | 10378011..10378221 | 230..440 | 100 | -> | Plus |
arm_2L | 10378288..10378399 | 441..552 | 100 | -> | Plus |
arm_2L | 10378491..10378864 | 553..926 | 100 | -> | Plus |
arm_2L | 10378923..10379167 | 927..1173 | 99 | | Plus |
BO15312.pep Sequence
Translation from 16 to 1189
> BO15312.pep
MEPKRWHLHLSCFLLLLSSTFSDVGKITSSQNHFGNTLQSQFNTKNNTRV
IAQKGGLAILPCVVKVNSPATVSWIRRKDFQLLTVGLSTHSSDKRFLVEH
TRHMGHWSLRIKAVREEDRGFYECQLSIYPTQSIVIELKIVEAVAEISSA
PELHIDETSTLRLECKLKRATENPAFVFWYHDSKMINYDSQGGFVVTSIG
QSNPQSGQFYRSSPANKSRATMPMESSNGVLNSLLGSSDAIKAPAANVPS
STPYMTQQHQSAYLLNPSVSVLTVKQVNFRHAGNYTCAPSNARPASITVH
VLRGEKTAAMQHANRSILDTETNGNGTFGLITLGGLNGTSGVTLAGGILY
FSGLFLLMGAVVFDRFSLAATHKVFVAFIIVTMHSASFLDH
BO15312.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr19-PC | 385 | CG13140-PC | 1..385 | 1..385 | 1981 | 100 | Plus |
dpr19-PB | 385 | CG13140-PB | 1..385 | 1..385 | 1981 | 100 | Plus |
dpr19-PA | 385 | CG13140-PA | 1..385 | 1..385 | 1981 | 100 | Plus |
dpr13-PB | 419 | CG33996-PB | 177..333 | 42..198 | 393 | 47.8 | Plus |
dpr13-PC | 418 | CG33996-PC | 177..332 | 42..198 | 376 | 47.1 | Plus |