Clone BO15313 Report

Search the DGRC for BO15313

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG4741-RA
Protein status:BO15313.pep: validated full length
Sequenced Size:655

Clone Sequence Records

BO15313.3prime Sequence

653 bp (652 high quality bases) assembled on 2006-06-16

> BO15313.3prime
ATGGTCTAGAAAGCTTGCCACCACTGGTGGTTGGCCGTTGACCAAAAATA
CGGTGGTGGTGGTGGAAGTGGTGGTTGTGGCCACGTTCGCCTCGTAAACC
GGCGGTGGTTCGTTAATTCCAACCGCCAAATTGGGATTGCTCGCTTCCAA
GCTGGTGGCTATGGTCAGTGTGCTGTCCTGCTTTCGCTCGCTAAAAGCGG
CCTCGTCGTAGCTGGGCGGCAAATCCAAGGTCTTGGGCAGGACACTAACT
TCGTTCTGGCTGTTTGAGCACACGTTTCCGACTCCTCCGGAGCCGCCGTT
GCAATTGTTCGTCACATTGATCTCCATTTGGCGACGGGCTCGTTGTCTCT
GCTGGGCCAGATTCCGCACATTGGTCTCTCGCTTGCGTTTGGCGCTCATA
ATCATGGCCAGAGGAAAGGCGATGACGAAGAGGAAGACCAGCACAATGTA
AATGACATAGCTGGGATAAAATAACATGTATGGACCATCGTAGCCGCCAC
CGTTGATCCAAATTGTGACGGAAGTGGTGTTAACGTATTCCCAATCCGAT
GTCGTACTTTCAGTGGTGTTAAGTGTTCCGTTGGCCACCGTGGTGGAGTC
AAAAGGGGTGCTGACCGTCGCGTTTATGGCAGGGGCCATGTCGACTGATA
ACT

BO15313.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-PA 624 CG4741-RA 1..621 639..19 3105 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-RA 881 CG4741-RA 97..719 641..19 3115 100 Minus
CG4741-RB 854 CG4741-RB 367..692 344..19 1615 99.7 Minus
CG4741-RC 880 CG4741-RC 437..758 340..19 1610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24610963..24611284 19..340 1610 100 Plus
2R 25286936 2R 24614033..24614277 397..641 1225 100 Plus
2R 25286936 2R 24613914..24613972 339..397 295 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:25:39 has no hits.

BO15313.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:00 Download gff for BO15313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-PA 1..624 15..639 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:06 Download gff for BO15313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-PA 1..624 15..639 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:39:12 Download gff for BO15313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 94..722 15..644 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:46 Download gff for BO15313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 94..722 15..644 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:46 Download gff for BO15313.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24610960..24611282 15..338 99 <- Plus
2R 24613914..24613971 339..396 100 <- Plus
2R 24614033..24614280 397..644 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:39:12 Download gff for BO15313.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20498483..20498805 15..338 99 <- Plus
arm_2R 20501437..20501494 339..396 100 <- Plus
arm_2R 20501556..20501803 397..644 99   Plus

BO15313.5prime Sequence

653 bp (652 high quality bases) assembled on 2006-06-16

> BO15313.5prime
GAAGTTATCAGTCGACATGGCCCCTGCCATAAACGCGACGGTCAGCACCC
CTTTTGACTCCACCACGGTGGCCAACGGAACACTTAACACCACTGAAAGT
ACGACATCGGATTGGGAATACGTTAACACCACTTCCGTCACAATTTGGAT
CAACGGTGGCGGCTACGATGGTCCATACATGTTATTTTATCCCAGCTATG
TCATTTACATTGTGCTGGTCTTCCTCTTCGTCATCGCCTTTCCTCTGGCC
ATGATTATGAGCGCCAAACGCAAGCGAGAGACCAATGTGCGGAATCTGGC
CCAGCAGAGACAACGAGCCCGTCGCCAAATGGAGATCAATGTGACGAACA
ATTGCAACGGCGGCTCCGGAGGAGTCGGAAACGTGTGCTCAAACAGCCAG
AACGAAGTTAGTGTCCTGCCCAAGACCTTGGATTTGCCGCCCAGCTACGA
CGAGGCCGCTTTTAGCGAGCGAAAGCAGGACAGCACACTGACCATAGCCA
CCAGCTTGGAAGCGAGCAATCCCAATTTGGCGGTTGGAATTAACGAACCA
CCGCCGGTTTACGAGGCGAACGTGGCCACAACCACCACTTCCACCACCAC
CACCGTATTTTTGGTCAACGGCCAACCACCAGTGGTGGCAAGCTTTCTAG
ACC

BO15313.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-PA 624 CG4741-RA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-RA 881 CG4741-RA 97..719 15..637 3115 100 Plus
CG4741-RB 854 CG4741-RB 367..692 312..637 1615 99.7 Plus
CG4741-RC 880 CG4741-RC 437..758 316..637 1610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24610963..24611284 637..316 1610 100 Minus
2R 25286936 2R 24614033..24614277 259..15 1225 100 Minus
2R 25286936 2R 24613914..24613972 317..259 295 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:31:42 has no hits.

BO15313.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:01 Download gff for BO15313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-PA 1..624 17..641 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:07 Download gff for BO15313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-PA 1..624 17..641 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:10:25 Download gff for BO15313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 94..722 12..641 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:52 Download gff for BO15313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 94..722 12..641 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:52 Download gff for BO15313.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24610960..24611282 318..641 99 <- Minus
2R 24613914..24613971 260..317 100 <- Minus
2R 24614033..24614280 12..259 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:10:25 Download gff for BO15313.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20498483..20498805 318..641 99 <- Minus
arm_2R 20501437..20501494 260..317 100 <- Minus
arm_2R 20501556..20501803 12..259 99   Minus

BO15313.complete Sequence

655 bp assembled on 2007-10-17

GenBank Submission: FJ633401

> BO15313.complete
GAAGTTATCAGTCGACATGGCCCCTGCCATAAACGCGACGGTCAGCACCC
CTTTTGACTCCACCACGGTGGCCAACGGAACACTTAACACCACTGAAAGT
ACGACATCGGATTGGGAATACGTTAACACCACTTCCGTCACAATTTGGAT
CAACGGTGGCGGCTACGATGGTCCATACATGTTATTTTATCCCAGCTATG
TCATTTACATTGTGCTGGTCTTCCTCTTCGTCATCGCCTTTCCTCTGGCC
ATGATTATGAGCGCCAAACGCAAGCGAGAGACCAATGTGCGGAATCTGGC
CCAGCAGAGACAACGAGCCCGTCGCCAAATGGAGATCAATGTGACGAACA
ATTGCAACGGCGGCTCCGGAGGAGTCGGAAACGTGTGCTCAAACAGCCAG
AACGAAGTTAGTGTCCTGCCCAAGACCTTGGATTTGCCGCCCAGCTACGA
CGAGGCCGCTTTTAGCGAGCGAAAGCAGGACAGCACACTGACCATAGCCA
CCAGCTTGGAAGCGAGCAATCCCAATTTGGCGGTTGGAATTAACGAACCA
CCGCCGGTTTACGAGGCGAACGTGGCCACAACCACCACTTCCACCACCAC
CACCGTATTTTTGGTCAACGGCCAACCACCAGTGGTGGCAAGCTTTCTAG
ACCAT

BO15313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-RA 624 CG4741-PA 1..621 17..637 3105 100 Plus
CG4741-RB 447 CG4741-PB 119..444 312..637 1615 99.7 Plus
CG4741-RC 312 CG4741-PC 1..309 329..637 1545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-RA 881 CG4741-RA 97..719 15..637 3115 100 Plus
CG4741-RB 854 CG4741-RB 367..692 312..637 1615 99.7 Plus
CG4741-RC 880 CG4741-RC 437..758 316..637 1610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24610963..24611284 637..316 1610 100 Minus
2R 25286936 2R 24614033..24614277 259..15 1225 100 Minus
2R 25286936 2R 24613914..24613972 317..259 295 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:43:54 has no hits.

BO15313.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:42 Download gff for BO15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 1..624 17..641 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:08 Download gff for BO15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 77..705 12..641 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:22 Download gff for BO15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 99..719 17..639 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:25 Download gff for BO15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 82..702 17..639 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:40 Download gff for BO15313.complete
Subject Subject Range Query Range Percent Splice Strand
CG4741-RA 99..719 17..639 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:40 Download gff for BO15313.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24610961..24611282 318..639 99 <- Minus
2R 24613914..24613971 260..317 100 <- Minus
2R 24614033..24614275 17..259 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:22 Download gff for BO15313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20498484..20498805 318..639 99 <- Minus
arm_2R 20501437..20501494 260..317 100 <- Minus
arm_2R 20501556..20501798 17..259 100   Minus

BO15313.pep Sequence

Translation from 16 to 655

> BO15313.pep
MAPAINATVSTPFDSTTVANGTLNTTESTTSDWEYVNTTSVTIWINGGGY
DGPYMLFYPSYVIYIVLVFLFVIAFPLAMIMSAKRKRETNVRNLAQQRQR
ARRQMEINVTNNCNGGSGGVGNVCSNSQNEVSVLPKTLDLPPSYDEAAFS
ERKQDSTLTIATSLEASNPNLAVGINEPPPVYEANVATTTTSTTTTVFLV
NGQPPVVASFLDH

BO15313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4741-PA 207 CG4741-PA 1..207 1..207 1066 100 Plus
CG4741-PB 148 CG4741-PB 6..148 62..207 569 78.8 Plus
CG4741-PC 103 CG4741-PC 1..103 105..207 530 100 Plus