Clone Sequence Records
BO15313.3prime Sequence
653 bp (652 high quality bases) assembled on 2006-06-16
> BO15313.3prime
ATGGTCTAGAAAGCTTGCCACCACTGGTGGTTGGCCGTTGACCAAAAATA
CGGTGGTGGTGGTGGAAGTGGTGGTTGTGGCCACGTTCGCCTCGTAAACC
GGCGGTGGTTCGTTAATTCCAACCGCCAAATTGGGATTGCTCGCTTCCAA
GCTGGTGGCTATGGTCAGTGTGCTGTCCTGCTTTCGCTCGCTAAAAGCGG
CCTCGTCGTAGCTGGGCGGCAAATCCAAGGTCTTGGGCAGGACACTAACT
TCGTTCTGGCTGTTTGAGCACACGTTTCCGACTCCTCCGGAGCCGCCGTT
GCAATTGTTCGTCACATTGATCTCCATTTGGCGACGGGCTCGTTGTCTCT
GCTGGGCCAGATTCCGCACATTGGTCTCTCGCTTGCGTTTGGCGCTCATA
ATCATGGCCAGAGGAAAGGCGATGACGAAGAGGAAGACCAGCACAATGTA
AATGACATAGCTGGGATAAAATAACATGTATGGACCATCGTAGCCGCCAC
CGTTGATCCAAATTGTGACGGAAGTGGTGTTAACGTATTCCCAATCCGAT
GTCGTACTTTCAGTGGTGTTAAGTGTTCCGTTGGCCACCGTGGTGGAGTC
AAAAGGGGTGCTGACCGTCGCGTTTATGGCAGGGGCCATGTCGACTGATA
ACT
BO15313.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-PA | 624 | CG4741-RA | 1..621 | 639..19 | 3105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-RA | 881 | CG4741-RA | 97..719 | 641..19 | 3115 | 100 | Minus |
CG4741-RB | 854 | CG4741-RB | 367..692 | 344..19 | 1615 | 99.7 | Minus |
CG4741-RC | 880 | CG4741-RC | 437..758 | 340..19 | 1610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24610963..24611284 | 19..340 | 1610 | 100 | Plus |
2R | 25286936 | 2R | 24614033..24614277 | 397..641 | 1225 | 100 | Plus |
2R | 25286936 | 2R | 24613914..24613972 | 339..397 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:25:39 has no hits.
BO15313.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:00 Download gff for
BO15313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-PA | 1..624 | 15..639 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:06 Download gff for
BO15313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-PA | 1..624 | 15..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:39:12 Download gff for
BO15313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 94..722 | 15..644 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:46 Download gff for
BO15313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 94..722 | 15..644 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:46 Download gff for
BO15313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24610960..24611282 | 15..338 | 99 | <- | Plus |
2R | 24613914..24613971 | 339..396 | 100 | <- | Plus |
2R | 24614033..24614280 | 397..644 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:39:12 Download gff for
BO15313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20498483..20498805 | 15..338 | 99 | <- | Plus |
arm_2R | 20501437..20501494 | 339..396 | 100 | <- | Plus |
arm_2R | 20501556..20501803 | 397..644 | 99 | | Plus |
BO15313.5prime Sequence
653 bp (652 high quality bases) assembled on 2006-06-16
> BO15313.5prime
GAAGTTATCAGTCGACATGGCCCCTGCCATAAACGCGACGGTCAGCACCC
CTTTTGACTCCACCACGGTGGCCAACGGAACACTTAACACCACTGAAAGT
ACGACATCGGATTGGGAATACGTTAACACCACTTCCGTCACAATTTGGAT
CAACGGTGGCGGCTACGATGGTCCATACATGTTATTTTATCCCAGCTATG
TCATTTACATTGTGCTGGTCTTCCTCTTCGTCATCGCCTTTCCTCTGGCC
ATGATTATGAGCGCCAAACGCAAGCGAGAGACCAATGTGCGGAATCTGGC
CCAGCAGAGACAACGAGCCCGTCGCCAAATGGAGATCAATGTGACGAACA
ATTGCAACGGCGGCTCCGGAGGAGTCGGAAACGTGTGCTCAAACAGCCAG
AACGAAGTTAGTGTCCTGCCCAAGACCTTGGATTTGCCGCCCAGCTACGA
CGAGGCCGCTTTTAGCGAGCGAAAGCAGGACAGCACACTGACCATAGCCA
CCAGCTTGGAAGCGAGCAATCCCAATTTGGCGGTTGGAATTAACGAACCA
CCGCCGGTTTACGAGGCGAACGTGGCCACAACCACCACTTCCACCACCAC
CACCGTATTTTTGGTCAACGGCCAACCACCAGTGGTGGCAAGCTTTCTAG
ACC
BO15313.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-PA | 624 | CG4741-RA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-RA | 881 | CG4741-RA | 97..719 | 15..637 | 3115 | 100 | Plus |
CG4741-RB | 854 | CG4741-RB | 367..692 | 312..637 | 1615 | 99.7 | Plus |
CG4741-RC | 880 | CG4741-RC | 437..758 | 316..637 | 1610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24610963..24611284 | 637..316 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 24614033..24614277 | 259..15 | 1225 | 100 | Minus |
2R | 25286936 | 2R | 24613914..24613972 | 317..259 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:31:42 has no hits.
BO15313.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:01 Download gff for
BO15313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-PA | 1..624 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:07 Download gff for
BO15313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-PA | 1..624 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:10:25 Download gff for
BO15313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 94..722 | 12..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:52 Download gff for
BO15313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 94..722 | 12..641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:52 Download gff for
BO15313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24610960..24611282 | 318..641 | 99 | <- | Minus |
2R | 24613914..24613971 | 260..317 | 100 | <- | Minus |
2R | 24614033..24614280 | 12..259 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:10:25 Download gff for
BO15313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20498483..20498805 | 318..641 | 99 | <- | Minus |
arm_2R | 20501437..20501494 | 260..317 | 100 | <- | Minus |
arm_2R | 20501556..20501803 | 12..259 | 99 | | Minus |
BO15313.complete Sequence
655 bp assembled on 2007-10-17
GenBank Submission: FJ633401
> BO15313.complete
GAAGTTATCAGTCGACATGGCCCCTGCCATAAACGCGACGGTCAGCACCC
CTTTTGACTCCACCACGGTGGCCAACGGAACACTTAACACCACTGAAAGT
ACGACATCGGATTGGGAATACGTTAACACCACTTCCGTCACAATTTGGAT
CAACGGTGGCGGCTACGATGGTCCATACATGTTATTTTATCCCAGCTATG
TCATTTACATTGTGCTGGTCTTCCTCTTCGTCATCGCCTTTCCTCTGGCC
ATGATTATGAGCGCCAAACGCAAGCGAGAGACCAATGTGCGGAATCTGGC
CCAGCAGAGACAACGAGCCCGTCGCCAAATGGAGATCAATGTGACGAACA
ATTGCAACGGCGGCTCCGGAGGAGTCGGAAACGTGTGCTCAAACAGCCAG
AACGAAGTTAGTGTCCTGCCCAAGACCTTGGATTTGCCGCCCAGCTACGA
CGAGGCCGCTTTTAGCGAGCGAAAGCAGGACAGCACACTGACCATAGCCA
CCAGCTTGGAAGCGAGCAATCCCAATTTGGCGGTTGGAATTAACGAACCA
CCGCCGGTTTACGAGGCGAACGTGGCCACAACCACCACTTCCACCACCAC
CACCGTATTTTTGGTCAACGGCCAACCACCAGTGGTGGCAAGCTTTCTAG
ACCAT
BO15313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-RA | 624 | CG4741-PA | 1..621 | 17..637 | 3105 | 100 | Plus |
CG4741-RB | 447 | CG4741-PB | 119..444 | 312..637 | 1615 | 99.7 | Plus |
CG4741-RC | 312 | CG4741-PC | 1..309 | 329..637 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-RA | 881 | CG4741-RA | 97..719 | 15..637 | 3115 | 100 | Plus |
CG4741-RB | 854 | CG4741-RB | 367..692 | 312..637 | 1615 | 99.7 | Plus |
CG4741-RC | 880 | CG4741-RC | 437..758 | 316..637 | 1610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24610963..24611284 | 637..316 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 24614033..24614277 | 259..15 | 1225 | 100 | Minus |
2R | 25286936 | 2R | 24613914..24613972 | 317..259 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:43:54 has no hits.
BO15313.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:42 Download gff for
BO15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 1..624 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:08 Download gff for
BO15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 77..705 | 12..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:22 Download gff for
BO15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 99..719 | 17..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:25 Download gff for
BO15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 82..702 | 17..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:40 Download gff for
BO15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4741-RA | 99..719 | 17..639 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:40 Download gff for
BO15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24610961..24611282 | 318..639 | 99 | <- | Minus |
2R | 24613914..24613971 | 260..317 | 100 | <- | Minus |
2R | 24614033..24614275 | 17..259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:22 Download gff for
BO15313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20498484..20498805 | 318..639 | 99 | <- | Minus |
arm_2R | 20501437..20501494 | 260..317 | 100 | <- | Minus |
arm_2R | 20501556..20501798 | 17..259 | 100 | | Minus |
BO15313.pep Sequence
Translation from 16 to 655
> BO15313.pep
MAPAINATVSTPFDSTTVANGTLNTTESTTSDWEYVNTTSVTIWINGGGY
DGPYMLFYPSYVIYIVLVFLFVIAFPLAMIMSAKRKRETNVRNLAQQRQR
ARRQMEINVTNNCNGGSGGVGNVCSNSQNEVSVLPKTLDLPPSYDEAAFS
ERKQDSTLTIATSLEASNPNLAVGINEPPPVYEANVATTTTSTTTTVFLV
NGQPPVVASFLDH
BO15313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4741-PA | 207 | CG4741-PA | 1..207 | 1..207 | 1066 | 100 | Plus |
CG4741-PB | 148 | CG4741-PB | 6..148 | 62..207 | 569 | 78.8 | Plus |
CG4741-PC | 103 | CG4741-PC | 1..103 | 105..207 | 530 | 100 | Plus |