Clone BO15314 Report

Search the DGRC for BO15314

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptLysX-RA
Protein status:BO15314.pep: validated full length
Sequenced Size:460

Clone Sequence Records

BO15314.3prime Sequence

458 bp (457 high quality bases) assembled on 2006-06-16

> BO15314.3prime
ATGGTCTAGAAAGCTTGCAACAAAGCAATCATCGATCGGGGGCAGGTATC
CACTGCAGTAGTGCCAGGTGGACCAGGCTGACCAGCCCTGTTGACCCAGG
ACCTTTAGGGCACATCTTACGGAACTTTTGATGTCATCGGTCAAGAGAGC
GTTGCAACTCACATCGCAGCCATTGTGGGAGAACTTTCCACTGGACGGCT
GGCACCAGTACATGTCGTTGATCTGGAAAATGCCATAGTCGTTGGATCCA
TCGGTGTTGGGAGGCCCCACCACTCCGGTGCGGTAGGAGCTCTCGTGCTC
TGCAATGCACGCCCACTTGGACAACTGGTCACGAGAAACACCCATATTGG
CCATCTCGCGCGCCAGTGAGCAGCGATCCATGGTGCGACCCAGGACAGCT
GGAGTGACTAGTGCCAGGACACAGATTCCTAGGAGGGCTCTCATGTCGAC
TGATAACT

BO15314.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9120-PA 429 LysX-RA 1..426 444..19 2130 100 Minus
CG1165-PA 423 LysS-RA 159..246 286..199 165 87.5 Minus
CG9111-PA 390 LysC-RA 305..342 53..90 140 94.7 Plus
CG1179-PA 423 LysB-RA 352..389 90..53 140 94.7 Minus
CG1180-PA 423 LysE-RA 352..389 90..53 140 94.7 Minus
CG9118-PA 423 LysD-RA 352..389 90..53 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
LysX-RA 564 CG9120-RA 3..433 449..19 2140 99.8 Minus
LysD-RA 480 CG9118-RA 71..438 390..23 625 78.3 Minus
LysB-RB 611 CG1179-RB 75..442 390..23 625 78 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1194870..1195300 19..449 2140 99.8 Plus
3L 28110227 3L 1207445..1207812 390..23 625 78 Minus
3L 28110227 3L 1210759..1211126 23..390 625 78 Plus
3L 28110227 3L 1213003..1213370 390..23 595 77.4 Minus
3L 28110227 3L 1227826..1228190 390..23 560 77.4 Minus
3L 28110227 3L 1210536..1210724 390..202 420 81.5 Minus
Blast to na_te.dros performed on 2015-02-11 18:07:45 has no hits.

BO15314.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:02 Download gff for BO15314.3prime
Subject Subject Range Query Range Percent Splice Strand
LysX-PA 1..429 15..444 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:08 Download gff for BO15314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9120-PA 1..429 15..444 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:29:39 Download gff for BO15314.3prime
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..438 11..451 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:39:01 Download gff for BO15314.3prime
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..438 11..451 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:39:01 Download gff for BO15314.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1194865..1195300 11..449 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:29:39 Download gff for BO15314.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1194865..1195300 11..449 98   Plus

BO15314.5prime Sequence

458 bp (457 high quality bases) assembled on 2006-06-16

> BO15314.5prime
GAAGTTATCAGTCGACATGAGAGCCCTCCTAGGAATCTGTGTCCTGGCAC
TAGTCACTCCAGCTGTCCTGGGTCGCACCATGGATCGCTGCTCACTGGCG
CGCGAGATGGCCAATATGGGTGTTTCTCGTGACCAGTTGTCCAAGTGGGC
GTGCATTGCAGAGCACGAGAGCTCCTACCGCACCGGAGTGGTGGGGCCTC
CCAACACCGATGGATCCAACGACTATGGCATTTTCCAGATCAACGACATG
TACTGGTGCCAGCCGTCCAGTGGAAAGTTCTCCCACAATGGCTGCGATGT
GAGTTGCAACGCTCTCTTGACCGATGACATCAAAAGTTCCGTAAGATGTG
CCCTAAAGGTCCTGGGTCAACAGGGCTGGTCAGCCTGGTCCACCTGGCAC
TACTGCAGTGGATACCTGCCCCCGATCGATGATTGCTTTGTTGCAAGCTT
TCTAGACC

BO15314.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9120-PA 429 LysX-RA 1..426 17..442 2130 100 Plus
CG1165-PA 423 LysS-RA 159..246 175..262 165 87.5 Plus
CG9111-PA 390 LysC-RA 305..342 408..371 140 94.7 Minus
CG1179-PA 423 LysB-RA 352..389 371..408 140 94.7 Plus
CG1180-PA 423 LysE-RA 352..389 371..408 140 94.7 Plus
CG9118-PA 423 LysD-RA 352..389 371..408 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
LysX-RA 564 CG9120-RA 3..433 12..442 2140 99.8 Plus
LysD-RA 480 CG9118-RA 71..438 71..438 625 78.3 Plus
LysB-RB 611 CG1179-RB 75..442 71..438 625 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1194870..1195300 442..12 2140 99.8 Minus
3L 28110227 3L 1207445..1207812 71..438 625 78 Plus
3L 28110227 3L 1210759..1211126 438..71 625 78 Minus
3L 28110227 3L 1213003..1213370 71..438 595 77.4 Plus
3L 28110227 3L 1227826..1228190 71..438 560 77.4 Plus
3L 28110227 3L 1210536..1210724 71..259 420 81.5 Plus
Blast to na_te.dros performed on 2015-02-09 11:00:05 has no hits.

BO15314.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:03 Download gff for BO15314.5prime
Subject Subject Range Query Range Percent Splice Strand
LysX-PA 1..429 17..446 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:10 Download gff for BO15314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9120-PA 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:02 Download gff for BO15314.5prime
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..438 10..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:23 Download gff for BO15314.5prime
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..438 10..450 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:23 Download gff for BO15314.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1194865..1195300 12..450 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:02 Download gff for BO15314.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1194865..1195300 12..450 98   Minus

BO15314.complete Sequence

460 bp (460 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633402

> BO15314.complete
GAAGTTATCAGTCGACATGAGAGCCCTCCTAGGAATCTGTGTCCTGGCAC
TAGTCACTCCAGCTGTCCTGGGTCGCACCATGGATCGCTGCTCACTGGCG
CGCGAGATGGCCAATATGGGTGTTTCTCGTGACCAGTTGTCCAAGTGGGC
GTGCATTGCAGAGCACGAGAGCTCCTACCGCACCGGAGTGGTGGGGCCTC
CCAACACCGATGGATCCAACGACTATGGCATTTTCCAGATCAACGACATG
TACTGGTGCCAGCCGTCCAGTGGAAAGTTCTCCCACAATGGCTGCGATGT
GAGTTGCAACGCTCTCTTGACCGATGACATCAAAAGTTCCGTAAGATGTG
CCCTAAAGGTCCTGGGTCAACAGGGCTGGTCAGCCTGGTCCACCTGGCAC
TACTGCAGTGGATACCTGCCCCCGATCGATGATTGCTTTGTTGCAAGCTT
TCTAGACCAT

BO15314.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
LysX-RA 429 CG9120-PA 1..426 17..442 2130 100 Plus
LysD-RA 423 CG9118-PA 52..419 71..438 625 78 Plus
LysB-RB 423 CG1179-PB 52..419 71..438 625 78 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
LysX-RA 564 CG9120-RA 3..433 12..442 2140 99.8 Plus
LysD-RA 480 CG9118-RA 71..438 71..438 625 78 Plus
LysB-RB 611 CG1179-RB 75..442 71..438 625 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1194870..1195300 442..12 2140 99.8 Minus
3L 28110227 3L 1207445..1207812 71..438 625 78 Plus
3L 28110227 3L 1210759..1211126 438..71 625 78 Minus
3L 28110227 3L 1213003..1213370 71..438 595 77.4 Plus
3L 28110227 3L 1227826..1228190 71..438 560 77.4 Plus
3L 28110227 3L 1210536..1210724 71..259 420 81.5 Plus
Blast to na_te.dros performed on 2014-11-27 14:32:22 has no hits.

BO15314.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:26 Download gff for BO15314.complete
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:37 Download gff for BO15314.complete
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..438 10..450 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:46 Download gff for BO15314.complete
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 8..433 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:26 Download gff for BO15314.complete
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 1..438 10..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:35 Download gff for BO15314.complete
Subject Subject Range Query Range Percent Splice Strand
LysX-RA 8..433 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:35 Download gff for BO15314.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1194868..1195295 17..444 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:46 Download gff for BO15314.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1194868..1195295 17..444 99   Minus

BO15314.pep Sequence

Translation from 16 to 460

> BO15314.pep
MRALLGICVLALVTPAVLGRTMDRCSLAREMANMGVSRDQLSKWACIAEH
ESSYRTGVVGPPNTDGSNDYGIFQINDMYWCQPSSGKFSHNGCDVSCNAL
LTDDIKSSVRCALKVLGQQGWSAWSTWHYCSGYLPPIDDCFVASFLDH

BO15314.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
LysX-PA 142 CG9120-PA 1..142 1..142 785 100 Plus
LysB-PB 140 CG1179-PB 1..140 1..141 605 77.3 Plus
LysB-PA 140 CG1179-PA 1..140 1..141 605 77.3 Plus
LysC-PA 140 CG9111-PA 1..140 1..141 599 76.6 Plus
LysD-PA 140 CG9118-PA 1..140 1..141 596 75.9 Plus