Clone Sequence Records
BO15314.3prime Sequence
458 bp (457 high quality bases) assembled on 2006-06-16
> BO15314.3prime
ATGGTCTAGAAAGCTTGCAACAAAGCAATCATCGATCGGGGGCAGGTATC
CACTGCAGTAGTGCCAGGTGGACCAGGCTGACCAGCCCTGTTGACCCAGG
ACCTTTAGGGCACATCTTACGGAACTTTTGATGTCATCGGTCAAGAGAGC
GTTGCAACTCACATCGCAGCCATTGTGGGAGAACTTTCCACTGGACGGCT
GGCACCAGTACATGTCGTTGATCTGGAAAATGCCATAGTCGTTGGATCCA
TCGGTGTTGGGAGGCCCCACCACTCCGGTGCGGTAGGAGCTCTCGTGCTC
TGCAATGCACGCCCACTTGGACAACTGGTCACGAGAAACACCCATATTGG
CCATCTCGCGCGCCAGTGAGCAGCGATCCATGGTGCGACCCAGGACAGCT
GGAGTGACTAGTGCCAGGACACAGATTCCTAGGAGGGCTCTCATGTCGAC
TGATAACT
BO15314.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9120-PA | 429 | LysX-RA | 1..426 | 444..19 | 2130 | 100 | Minus |
CG1165-PA | 423 | LysS-RA | 159..246 | 286..199 | 165 | 87.5 | Minus |
CG9111-PA | 390 | LysC-RA | 305..342 | 53..90 | 140 | 94.7 | Plus |
CG1179-PA | 423 | LysB-RA | 352..389 | 90..53 | 140 | 94.7 | Minus |
CG1180-PA | 423 | LysE-RA | 352..389 | 90..53 | 140 | 94.7 | Minus |
CG9118-PA | 423 | LysD-RA | 352..389 | 90..53 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysX-RA | 564 | CG9120-RA | 3..433 | 449..19 | 2140 | 99.8 | Minus |
LysD-RA | 480 | CG9118-RA | 71..438 | 390..23 | 625 | 78.3 | Minus |
LysB-RB | 611 | CG1179-RB | 75..442 | 390..23 | 625 | 78 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1194870..1195300 | 19..449 | 2140 | 99.8 | Plus |
3L | 28110227 | 3L | 1207445..1207812 | 390..23 | 625 | 78 | Minus |
3L | 28110227 | 3L | 1210759..1211126 | 23..390 | 625 | 78 | Plus |
3L | 28110227 | 3L | 1213003..1213370 | 390..23 | 595 | 77.4 | Minus |
3L | 28110227 | 3L | 1227826..1228190 | 390..23 | 560 | 77.4 | Minus |
3L | 28110227 | 3L | 1210536..1210724 | 390..202 | 420 | 81.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:07:45 has no hits.
BO15314.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:02 Download gff for
BO15314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-PA | 1..429 | 15..444 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:08 Download gff for
BO15314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9120-PA | 1..429 | 15..444 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:29:39 Download gff for
BO15314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..438 | 11..451 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:39:01 Download gff for
BO15314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..438 | 11..451 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:39:01 Download gff for
BO15314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1194865..1195300 | 11..449 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:29:39 Download gff for
BO15314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1194865..1195300 | 11..449 | 98 | | Plus |
BO15314.5prime Sequence
458 bp (457 high quality bases) assembled on 2006-06-16
> BO15314.5prime
GAAGTTATCAGTCGACATGAGAGCCCTCCTAGGAATCTGTGTCCTGGCAC
TAGTCACTCCAGCTGTCCTGGGTCGCACCATGGATCGCTGCTCACTGGCG
CGCGAGATGGCCAATATGGGTGTTTCTCGTGACCAGTTGTCCAAGTGGGC
GTGCATTGCAGAGCACGAGAGCTCCTACCGCACCGGAGTGGTGGGGCCTC
CCAACACCGATGGATCCAACGACTATGGCATTTTCCAGATCAACGACATG
TACTGGTGCCAGCCGTCCAGTGGAAAGTTCTCCCACAATGGCTGCGATGT
GAGTTGCAACGCTCTCTTGACCGATGACATCAAAAGTTCCGTAAGATGTG
CCCTAAAGGTCCTGGGTCAACAGGGCTGGTCAGCCTGGTCCACCTGGCAC
TACTGCAGTGGATACCTGCCCCCGATCGATGATTGCTTTGTTGCAAGCTT
TCTAGACC
BO15314.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9120-PA | 429 | LysX-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
CG1165-PA | 423 | LysS-RA | 159..246 | 175..262 | 165 | 87.5 | Plus |
CG9111-PA | 390 | LysC-RA | 305..342 | 408..371 | 140 | 94.7 | Minus |
CG1179-PA | 423 | LysB-RA | 352..389 | 371..408 | 140 | 94.7 | Plus |
CG1180-PA | 423 | LysE-RA | 352..389 | 371..408 | 140 | 94.7 | Plus |
CG9118-PA | 423 | LysD-RA | 352..389 | 371..408 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysX-RA | 564 | CG9120-RA | 3..433 | 12..442 | 2140 | 99.8 | Plus |
LysD-RA | 480 | CG9118-RA | 71..438 | 71..438 | 625 | 78.3 | Plus |
LysB-RB | 611 | CG1179-RB | 75..442 | 71..438 | 625 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1194870..1195300 | 442..12 | 2140 | 99.8 | Minus |
3L | 28110227 | 3L | 1207445..1207812 | 71..438 | 625 | 78 | Plus |
3L | 28110227 | 3L | 1210759..1211126 | 438..71 | 625 | 78 | Minus |
3L | 28110227 | 3L | 1213003..1213370 | 71..438 | 595 | 77.4 | Plus |
3L | 28110227 | 3L | 1227826..1228190 | 71..438 | 560 | 77.4 | Plus |
3L | 28110227 | 3L | 1210536..1210724 | 71..259 | 420 | 81.5 | Plus |
Blast to na_te.dros performed on 2015-02-09 11:00:05 has no hits.
BO15314.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:03 Download gff for
BO15314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-PA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:10 Download gff for
BO15314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9120-PA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:02 Download gff for
BO15314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..438 | 10..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:23 Download gff for
BO15314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..438 | 10..450 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:23 Download gff for
BO15314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1194865..1195300 | 12..450 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:02 Download gff for
BO15314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1194865..1195300 | 12..450 | 98 | | Minus |
BO15314.complete Sequence
460 bp (460 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633402
> BO15314.complete
GAAGTTATCAGTCGACATGAGAGCCCTCCTAGGAATCTGTGTCCTGGCAC
TAGTCACTCCAGCTGTCCTGGGTCGCACCATGGATCGCTGCTCACTGGCG
CGCGAGATGGCCAATATGGGTGTTTCTCGTGACCAGTTGTCCAAGTGGGC
GTGCATTGCAGAGCACGAGAGCTCCTACCGCACCGGAGTGGTGGGGCCTC
CCAACACCGATGGATCCAACGACTATGGCATTTTCCAGATCAACGACATG
TACTGGTGCCAGCCGTCCAGTGGAAAGTTCTCCCACAATGGCTGCGATGT
GAGTTGCAACGCTCTCTTGACCGATGACATCAAAAGTTCCGTAAGATGTG
CCCTAAAGGTCCTGGGTCAACAGGGCTGGTCAGCCTGGTCCACCTGGCAC
TACTGCAGTGGATACCTGCCCCCGATCGATGATTGCTTTGTTGCAAGCTT
TCTAGACCAT
BO15314.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysX-RA | 429 | CG9120-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
LysD-RA | 423 | CG9118-PA | 52..419 | 71..438 | 625 | 78 | Plus |
LysB-RB | 423 | CG1179-PB | 52..419 | 71..438 | 625 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysX-RA | 564 | CG9120-RA | 3..433 | 12..442 | 2140 | 99.8 | Plus |
LysD-RA | 480 | CG9118-RA | 71..438 | 71..438 | 625 | 78 | Plus |
LysB-RB | 611 | CG1179-RB | 75..442 | 71..438 | 625 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1194870..1195300 | 442..12 | 2140 | 99.8 | Minus |
3L | 28110227 | 3L | 1207445..1207812 | 71..438 | 625 | 78 | Plus |
3L | 28110227 | 3L | 1210759..1211126 | 438..71 | 625 | 78 | Minus |
3L | 28110227 | 3L | 1213003..1213370 | 71..438 | 595 | 77.4 | Plus |
3L | 28110227 | 3L | 1227826..1228190 | 71..438 | 560 | 77.4 | Plus |
3L | 28110227 | 3L | 1210536..1210724 | 71..259 | 420 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:32:22 has no hits.
BO15314.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:26 Download gff for
BO15314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:37 Download gff for
BO15314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..438 | 10..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:46 Download gff for
BO15314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 8..433 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:26 Download gff for
BO15314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 1..438 | 10..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:35 Download gff for
BO15314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysX-RA | 8..433 | 17..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:35 Download gff for
BO15314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1194868..1195295 | 17..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:46 Download gff for
BO15314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1194868..1195295 | 17..444 | 99 | | Minus |
BO15314.pep Sequence
Translation from 16 to 460
> BO15314.pep
MRALLGICVLALVTPAVLGRTMDRCSLAREMANMGVSRDQLSKWACIAEH
ESSYRTGVVGPPNTDGSNDYGIFQINDMYWCQPSSGKFSHNGCDVSCNAL
LTDDIKSSVRCALKVLGQQGWSAWSTWHYCSGYLPPIDDCFVASFLDH
BO15314.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysX-PA | 142 | CG9120-PA | 1..142 | 1..142 | 785 | 100 | Plus |
LysB-PB | 140 | CG1179-PB | 1..140 | 1..141 | 605 | 77.3 | Plus |
LysB-PA | 140 | CG1179-PA | 1..140 | 1..141 | 605 | 77.3 | Plus |
LysC-PA | 140 | CG9111-PA | 1..140 | 1..141 | 599 | 76.6 | Plus |
LysD-PA | 140 | CG9118-PA | 1..140 | 1..141 | 596 | 75.9 | Plus |