Clone BO15315 Report

Search the DGRC for BO15315

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptskpF-RA
Protein status:BO15315.pep: validated full length
Sequenced Size:547

Clone Sequence Records

BO15315.3prime Sequence

545 bp (544 high quality bases) assembled on 2006-06-16

> BO15315.3prime
ATGGTCTAGAAAGCTTGCTATAATTTCGCCGTACTCTATCGCCTCGTCCT
CCTGCGGGACTTCCGACTCCATCGTCATCAAATCCTCCTCGGAGGGCGAG
AAATCGTTGGTTATGTGAAAGGTCTGGCGAATCTCCTCCGTCGTGCGGCC
TTTAATCATGTTGGCCACCGTCATGCAGGCGGCGTTCAGCAGATTGGGAA
TGTCCAGGTAGTTGGCCGCCAAGATGAGTTCGAAGAGCGTGCCCTGATCC
ATGGACAGGAACTCGGCGTCCCAGGGGGTGATCTGCACAGCGACGGACTT
GGCCGCTTCCTCTTCGTTCTCCTCTGCAATGTCCTCGCGATGATGCTTGG
CCCAAATGAGGACCTTCTTCAGGATCGTCGAGTTCACATTGGGCAGCGGG
ATAAGAGTGTCGTTCTCCGCTTCCACTGGACAATCCTCCAATAGGGTCTT
AATGGTGCTCGAGCACTTGGCAGTCTCGATGTCGGTCTCGAAAATTTCGC
CATCGGAGGACTGCAATTTGATGACTGGCATGTCGACTGATAACT

BO15315.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12227-PA 516 skpF-RA 1..513 531..19 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
SkpF-RA 695 CG12227-RA 73..586 532..19 2570 100 Minus
SkpB-RA 877 CG8881-RA 530..628 246..148 195 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23458174..23458687 19..532 2570 100 Plus
2R 25286936 2R 12139544..12139642 148..246 195 79.8 Plus
Blast to na_te.dros performed on 2015-02-12 11:42:43 has no hits.

BO15315.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:04 Download gff for BO15315.3prime
Subject Subject Range Query Range Percent Splice Strand
skpF-PA 1..516 15..531 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:11 Download gff for BO15315.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12227-PA 1..516 15..531 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:22 Download gff for BO15315.3prime
Subject Subject Range Query Range Percent Splice Strand
skpF-RA 73..592 11..532 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:24 Download gff for BO15315.3prime
Subject Subject Range Query Range Percent Splice Strand
SkpF-RA 73..592 11..532 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:24 Download gff for BO15315.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23458168..23458687 11..532 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:22 Download gff for BO15315.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19345691..19346210 11..532 99   Plus

BO15315.5prime Sequence

545 bp (544 high quality bases) assembled on 2006-06-16

> BO15315.5prime
GAAGTTATCAGTCGACATGCCAGTCATCAAATTGCAGTCCTCCGATGGCG
AAATTTTCGAGACCGACATCGAGACTGCCAAGTGCTCGAGCACCATTAAG
ACCCTATTGGAGGATTGTCCAGTGGAAGCGGAGAACGACACTCTTATCCC
GCTGCCCAATGTGAACTCGACGATCCTGAAGAAGGTCCTCATTTGGGCCA
AGCATCATCGCGAGGACATTGCAGAGGAGAACGAAGAGGAAGCGGCCAAG
TCCGTCGCTGTGCAGATCACCCCCTGGGACGCCGAGTTCCTGTCCATGGA
TCAGGGCACGCTCTTCGAACTCATCTTGGCGGCCAACTACCTGGACATTC
CCAATCTGCTGAACGCCGCCTGCATGACGGTGGCCAACATGATTAAAGGC
CGCACGACGGAGGAGATTCGCCAGACCTTTCACATAACCAACGATTTCTC
GCCCTCCGAGGAGGATTTGATGACGATGGAGTCGGAAGTCCCGCAGGAGG
ACGAGGCGATAGAGTACGGCGAAATTATAGCAAGCTTTCTAGACC

BO15315.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12227-PA 516 skpF-RA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
SkpF-RA 695 CG12227-RA 73..586 16..529 2570 100 Plus
SkpB-RA 877 CG8881-RA 530..628 302..400 195 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23458174..23458687 529..16 2570 100 Minus
2R 25286936 2R 12139544..12139642 400..302 195 79.8 Minus
Blast to na_te.dros performed on 2015-02-02 07:58:15 has no hits.

BO15315.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:05 Download gff for BO15315.5prime
Subject Subject Range Query Range Percent Splice Strand
skpF-PA 1..516 17..533 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:13 Download gff for BO15315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12227-PA 1..516 17..533 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:55 Download gff for BO15315.5prime
Subject Subject Range Query Range Percent Splice Strand
skpF-RA 73..592 16..537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:16:24 Download gff for BO15315.5prime
Subject Subject Range Query Range Percent Splice Strand
SkpF-RA 73..592 16..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:16:24 Download gff for BO15315.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23458168..23458687 16..537 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:55 Download gff for BO15315.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19345691..19346210 16..537 99   Minus

BO15315.complete Sequence

547 bp (547 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633403

> BO15315.complete
GAAGTTATCAGTCGACATGCCAGTCATCAAATTGCAGTCCTCCGATGGCG
AAATTTTCGAGACCGACATCGAGACTGCCAAGTGCTCGAGCACCATTAAG
ACCCTATTGGAGGATTGTCCAGTGGAAGCGGAGAACGACACTCTTATCCC
GCTGCCCAATGTGAACTCGACGATCCTGAAGAAGGTCCTCATTTGGGCCA
AGCATCATCGCGAGGACATTGCAGAGGAGAACGAAGAGGAAGCGGCCAAG
TCCGTCGCTGTGCAGATCACCCCCTGGGACGCCGAGTTCCTGTCCATGGA
TCAGGGCACGCTCTTCGAACTCATCTTGGCGGCCAACTACCTGGACATTC
CCAATCTGCTGAACGCCGCCTGCATGACGGTGGCCAACATGATTAAAGGC
CGCACGACGGAGGAGATTCGCCAGACCTTTCACATAACCAACGATTTCTC
GCCCTCCGAGGAGGATTTGATGACGATGGAGTCGGAAGTCCCGCAGGAGG
ACGAGGCGATAGAGTACGGCGAAATTATAGCAAGCTTTCTAGACCAT

BO15315.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
SkpF-RA 516 CG12227-PA 1..513 17..529 2565 100 Plus
SkpB-RA 486 CG8881-PA 283..381 302..400 195 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
SkpF-RA 695 CG12227-RA 73..586 16..529 2570 100 Plus
SkpB-RA 877 CG8881-RA 530..628 302..400 195 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23458174..23458687 529..16 2570 100 Minus
2R 25286936 2R 12139544..12139642 400..302 195 79.8 Minus
Blast to na_te.dros performed on 2014-11-28 01:04:50 has no hits.

BO15315.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:37 Download gff for BO15315.complete
Subject Subject Range Query Range Percent Splice Strand
skpF-RA 1..516 17..533 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:52 Download gff for BO15315.complete
Subject Subject Range Query Range Percent Splice Strand
skpF-RA 73..592 16..537 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:26 Download gff for BO15315.complete
Subject Subject Range Query Range Percent Splice Strand
skpF-RA 74..586 17..531 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:38 Download gff for BO15315.complete
Subject Subject Range Query Range Percent Splice Strand
skpF-RA 73..592 16..537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:05 Download gff for BO15315.complete
Subject Subject Range Query Range Percent Splice Strand
SkpF-RA 74..586 17..531 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:05 Download gff for BO15315.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23458172..23458686 17..531 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:26 Download gff for BO15315.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19345695..19346209 17..531 99   Minus

BO15315.pep Sequence

Translation from 16 to 547

> BO15315.pep
MPVIKLQSSDGEIFETDIETAKCSSTIKTLLEDCPVEAENDTLIPLPNVN
STILKKVLIWAKHHREDIAEENEEEAAKSVAVQITPWDAEFLSMDQGTLF
ELILAANYLDIPNLLNAACMTVANMIKGRTTEEIRQTFHITNDFSPSEED
LMTMESEVPQEDEAIEYGEIIASFLDH

BO15315.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
SkpF-PA 171 CG12227-PA 1..171 1..171 873 100 Plus
SkpA-PI 162 CG16983-PI 1..161 1..161 506 60.2 Plus
SkpA-PH 162 CG16983-PH 1..161 1..161 506 60.2 Plus
SkpA-PA 162 CG16983-PA 1..161 1..161 506 60.2 Plus
SkpA-PD 162 CG16983-PD 1..161 1..161 506 60.2 Plus