Clone Sequence Records
BO15315.3prime Sequence
545 bp (544 high quality bases) assembled on 2006-06-16
> BO15315.3prime
ATGGTCTAGAAAGCTTGCTATAATTTCGCCGTACTCTATCGCCTCGTCCT
CCTGCGGGACTTCCGACTCCATCGTCATCAAATCCTCCTCGGAGGGCGAG
AAATCGTTGGTTATGTGAAAGGTCTGGCGAATCTCCTCCGTCGTGCGGCC
TTTAATCATGTTGGCCACCGTCATGCAGGCGGCGTTCAGCAGATTGGGAA
TGTCCAGGTAGTTGGCCGCCAAGATGAGTTCGAAGAGCGTGCCCTGATCC
ATGGACAGGAACTCGGCGTCCCAGGGGGTGATCTGCACAGCGACGGACTT
GGCCGCTTCCTCTTCGTTCTCCTCTGCAATGTCCTCGCGATGATGCTTGG
CCCAAATGAGGACCTTCTTCAGGATCGTCGAGTTCACATTGGGCAGCGGG
ATAAGAGTGTCGTTCTCCGCTTCCACTGGACAATCCTCCAATAGGGTCTT
AATGGTGCTCGAGCACTTGGCAGTCTCGATGTCGGTCTCGAAAATTTCGC
CATCGGAGGACTGCAATTTGATGACTGGCATGTCGACTGATAACT
BO15315.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12227-PA | 516 | skpF-RA | 1..513 | 531..19 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpF-RA | 695 | CG12227-RA | 73..586 | 532..19 | 2570 | 100 | Minus |
SkpB-RA | 877 | CG8881-RA | 530..628 | 246..148 | 195 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23458174..23458687 | 19..532 | 2570 | 100 | Plus |
2R | 25286936 | 2R | 12139544..12139642 | 148..246 | 195 | 79.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:42:43 has no hits.
BO15315.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:04 Download gff for
BO15315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpF-PA | 1..516 | 15..531 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:11 Download gff for
BO15315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12227-PA | 1..516 | 15..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:22 Download gff for
BO15315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpF-RA | 73..592 | 11..532 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:24 Download gff for
BO15315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpF-RA | 73..592 | 11..532 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:24 Download gff for
BO15315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23458168..23458687 | 11..532 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:22 Download gff for
BO15315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19345691..19346210 | 11..532 | 99 | | Plus |
BO15315.5prime Sequence
545 bp (544 high quality bases) assembled on 2006-06-16
> BO15315.5prime
GAAGTTATCAGTCGACATGCCAGTCATCAAATTGCAGTCCTCCGATGGCG
AAATTTTCGAGACCGACATCGAGACTGCCAAGTGCTCGAGCACCATTAAG
ACCCTATTGGAGGATTGTCCAGTGGAAGCGGAGAACGACACTCTTATCCC
GCTGCCCAATGTGAACTCGACGATCCTGAAGAAGGTCCTCATTTGGGCCA
AGCATCATCGCGAGGACATTGCAGAGGAGAACGAAGAGGAAGCGGCCAAG
TCCGTCGCTGTGCAGATCACCCCCTGGGACGCCGAGTTCCTGTCCATGGA
TCAGGGCACGCTCTTCGAACTCATCTTGGCGGCCAACTACCTGGACATTC
CCAATCTGCTGAACGCCGCCTGCATGACGGTGGCCAACATGATTAAAGGC
CGCACGACGGAGGAGATTCGCCAGACCTTTCACATAACCAACGATTTCTC
GCCCTCCGAGGAGGATTTGATGACGATGGAGTCGGAAGTCCCGCAGGAGG
ACGAGGCGATAGAGTACGGCGAAATTATAGCAAGCTTTCTAGACC
BO15315.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12227-PA | 516 | skpF-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpF-RA | 695 | CG12227-RA | 73..586 | 16..529 | 2570 | 100 | Plus |
SkpB-RA | 877 | CG8881-RA | 530..628 | 302..400 | 195 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23458174..23458687 | 529..16 | 2570 | 100 | Minus |
2R | 25286936 | 2R | 12139544..12139642 | 400..302 | 195 | 79.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 07:58:15 has no hits.
BO15315.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:05 Download gff for
BO15315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpF-PA | 1..516 | 17..533 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:13 Download gff for
BO15315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12227-PA | 1..516 | 17..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:55 Download gff for
BO15315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpF-RA | 73..592 | 16..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:16:24 Download gff for
BO15315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpF-RA | 73..592 | 16..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:16:24 Download gff for
BO15315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23458168..23458687 | 16..537 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:55 Download gff for
BO15315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19345691..19346210 | 16..537 | 99 | | Minus |
BO15315.complete Sequence
547 bp (547 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633403
> BO15315.complete
GAAGTTATCAGTCGACATGCCAGTCATCAAATTGCAGTCCTCCGATGGCG
AAATTTTCGAGACCGACATCGAGACTGCCAAGTGCTCGAGCACCATTAAG
ACCCTATTGGAGGATTGTCCAGTGGAAGCGGAGAACGACACTCTTATCCC
GCTGCCCAATGTGAACTCGACGATCCTGAAGAAGGTCCTCATTTGGGCCA
AGCATCATCGCGAGGACATTGCAGAGGAGAACGAAGAGGAAGCGGCCAAG
TCCGTCGCTGTGCAGATCACCCCCTGGGACGCCGAGTTCCTGTCCATGGA
TCAGGGCACGCTCTTCGAACTCATCTTGGCGGCCAACTACCTGGACATTC
CCAATCTGCTGAACGCCGCCTGCATGACGGTGGCCAACATGATTAAAGGC
CGCACGACGGAGGAGATTCGCCAGACCTTTCACATAACCAACGATTTCTC
GCCCTCCGAGGAGGATTTGATGACGATGGAGTCGGAAGTCCCGCAGGAGG
ACGAGGCGATAGAGTACGGCGAAATTATAGCAAGCTTTCTAGACCAT
BO15315.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpF-RA | 516 | CG12227-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
SkpB-RA | 486 | CG8881-PA | 283..381 | 302..400 | 195 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpF-RA | 695 | CG12227-RA | 73..586 | 16..529 | 2570 | 100 | Plus |
SkpB-RA | 877 | CG8881-RA | 530..628 | 302..400 | 195 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23458174..23458687 | 529..16 | 2570 | 100 | Minus |
2R | 25286936 | 2R | 12139544..12139642 | 400..302 | 195 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:04:50 has no hits.
BO15315.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:37 Download gff for
BO15315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpF-RA | 1..516 | 17..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:52 Download gff for
BO15315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpF-RA | 73..592 | 16..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:26 Download gff for
BO15315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpF-RA | 74..586 | 17..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:38 Download gff for
BO15315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpF-RA | 73..592 | 16..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:05 Download gff for
BO15315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpF-RA | 74..586 | 17..531 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:05 Download gff for
BO15315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23458172..23458686 | 17..531 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:26 Download gff for
BO15315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19345695..19346209 | 17..531 | 99 | | Minus |
BO15315.pep Sequence
Translation from 16 to 547
> BO15315.pep
MPVIKLQSSDGEIFETDIETAKCSSTIKTLLEDCPVEAENDTLIPLPNVN
STILKKVLIWAKHHREDIAEENEEEAAKSVAVQITPWDAEFLSMDQGTLF
ELILAANYLDIPNLLNAACMTVANMIKGRTTEEIRQTFHITNDFSPSEED
LMTMESEVPQEDEAIEYGEIIASFLDH
BO15315.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpF-PA | 171 | CG12227-PA | 1..171 | 1..171 | 873 | 100 | Plus |
SkpA-PI | 162 | CG16983-PI | 1..161 | 1..161 | 506 | 60.2 | Plus |
SkpA-PH | 162 | CG16983-PH | 1..161 | 1..161 | 506 | 60.2 | Plus |
SkpA-PA | 162 | CG16983-PA | 1..161 | 1..161 | 506 | 60.2 | Plus |
SkpA-PD | 162 | CG16983-PD | 1..161 | 1..161 | 506 | 60.2 | Plus |