Clone BO15316 Report

Search the DGRC for BO15316

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG9040-RA
Protein status:BO15316.pep: validated full length
Sequenced Size:517

Clone Sequence Records

BO15316.3prime Sequence

515 bp (514 high quality bases) assembled on 2006-06-16

> BO15316.3prime
ATGGTCTAGAAAGCTTGCGCCTGTGCGTTTGCGTTTGTTGGCGGCAGTAT
TCGCCTTCTTCTTGGCTGCCACAGGTGTCTTCTTCTTTTGGGCAACAGGT
GTTTGCTTCTTGGCAGACGCGGCTGCCGCTACTTTGCGTTTGGGAGCAGC
GGTGGTGGTGCGCCTGCGCCGTCTAGCTCTGCGTGCAGCAGTTTTCTTGG
CTTTTTCTGCCTTGGTTGGAGTTGAACTGGAGGTCGTTTCGGCGGAGGAA
CCATCTCCAGAAGTTTCTGAAGAACTACCTGTATCGGAAGCTTCGCCGGA
GGAACTGTCCTCGGAGGTACTAGCATCATCTTCTGAGCTACTGGATGCAC
CAACACCACTTTCCGAACTGGACTCTACATCAGAGTCGTCATAGTAGTCA
TCACCATAGTCGTAATAATCGTAATAGTCATCGTCAGTGTCATCAGCACC
CGTTACGAAGGCAACCAATATGGCCAGGCTTAAAACCAACAGCAGCCTCA
TGTCGACTGATAACT

BO15316.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9040-PA 486 CG9040-RA 1..483 501..19 2415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9040-RA 749 CG9040-RA 65..547 501..19 2415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13987942..13988424 501..19 2415 100 Minus
Blast to na_te.dros performed on 2015-02-06 11:10:42 has no hits.

BO15316.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:06 Download gff for BO15316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9040-PA 1..486 15..501 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:15 Download gff for BO15316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9040-PA 1..486 15..501 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:49:11 Download gff for BO15316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 65..557 9..501 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:32:00 Download gff for BO15316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 65..557 9..501 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:32:00 Download gff for BO15316.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13987942..13988434 9..501 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:49:11 Download gff for BO15316.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13981042..13981534 9..501 99   Minus

BO15316.5prime Sequence

515 bp (514 high quality bases) assembled on 2006-06-16

> BO15316.5prime
GAAGTTATCAGTCGACATGAGGCTGCTGTTGGTTTTAAGCCTGGCCATAT
TGGTTGCCTTCGTAACGGGTGCTGATGACACTGACGATGACTATTACGAT
TATTACGACTATGGTGATGACTACTATGACGACTCTGATGTAGAGTCCAG
TTCGGAAAGTGGTGTTGGTGCATCCAGTAGCTCAGAAGATGATGCTAGTA
CCTCCGAGGACAGTTCCTCCGGCGAAGCTTCCGATACAGGTAGTTCTTCA
GAAACTTCTGGAGATGGTTCCTCCGCCGAAACGACCTCCAGTTCAACTCC
AACCAAGGCAGAAAAAGCCAAGAAAACTGCTGCACGCAGAGCTAGACGGC
GCAGGCGCACCACCACCGCTGCTCCCAAACGCAAAGTAGCGGCAGCCGCG
TCTGCCAAGAAGCAAACACCTGTTGCCCAAAAGAAGAAGACACCTGTGGC
AGCCAAGAAGAAGGCGAATACTGCCGCCAACAAACGCAAACGCACAGGCG
CAAGCTTTCTAGACC

BO15316.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9040-PA 486 CG9040-RA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9040-RA 749 CG9040-RA 65..547 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13987942..13988424 17..499 2415 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:02:26 has no hits.

BO15316.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:07 Download gff for BO15316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9040-PA 1..486 17..503 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:16 Download gff for BO15316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9040-PA 1..486 17..503 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:09:43 Download gff for BO15316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 65..557 17..509 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:58 Download gff for BO15316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 65..557 17..509 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:58 Download gff for BO15316.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13987942..13988434 17..509 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:09:43 Download gff for BO15316.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13981042..13981534 17..509 99   Plus

BO15316.complete Sequence

517 bp assembled on 2007-10-17

GenBank Submission: FJ633404

> BO15316.complete
GAAGTTATCAGTCGACATGAGGCTGCTGTTGGTTTTAAGCCTGGCCATAT
TGGTTGCCTTCGTAACGGGTGCTGATGACACTGACGATGACTATTACGAT
TATTACGACTATGGTGATGACTACTATGACGACTCTGATGTAGAGTCCAG
TTCGGAAAGTGGTGTTGGTGCATCCAGTAGCTCAGAAGATGATGCTAGTA
CCTCCGAGGACAGTTCCTCCGGCGAAGCTTCCGATACAGGTAGTTCTTCA
GAAACTTCTGGAGATGGTTCCTCCGCCGAAACGACCTCCAGTTCAACTCC
AACCAAGGCAGAAAAAGCCAAGAAAACTGCTGCACGCAGAGCTAGACGGC
GCAGGCGCACCACCACCGCTGCTCCCAAACGCAAAGTAGCGGCAGCCGCG
TCTGCCAAGAAGCAAACACCTGTTGCCCAAAAGAAGAAGACACCTGTGGC
AGCCAAGAAGAAGGCGAATACTGCCGCCAACAAACGCAAACGCACAGGCG
CAAGCTTTCTAGACCAT

BO15316.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9040-RA 486 CG9040-PA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9040-RA 749 CG9040-RA 65..547 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13987942..13988424 17..499 2415 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:06:29 has no hits.

BO15316.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:45 Download gff for BO15316.complete
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 1..486 17..503 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:10 Download gff for BO15316.complete
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 44..536 17..509 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:24 Download gff for BO15316.complete
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 65..547 17..501 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:03 Download gff for BO15316.complete
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 44..526 17..501 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:05 Download gff for BO15316.complete
Subject Subject Range Query Range Percent Splice Strand
CG9040-RA 65..547 17..501 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:05 Download gff for BO15316.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13987942..13988424 17..501 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:24 Download gff for BO15316.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13981042..13981524 17..501 99   Plus

BO15316.pep Sequence

Translation from 16 to 517

> BO15316.pep
MRLLLVLSLAILVAFVTGADDTDDDYYDYYDYGDDYYDDSDVESSSESGV
GASSSSEDDASTSEDSSSGEASDTGSSSETSGDGSSAETTSSSTPTKAEK
AKKTAARRARRRRRTTTAAPKRKVAAAASAKKQTPVAQKKKTPVAAKKKA
NTAANKRKRTGASFLDH

BO15316.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9040-PA 161 CG9040-PA 1..161 1..161 790 100 Plus
CG17362-PB 153 CG17362-PB 1..153 1..161 253 42.9 Plus
CG14265-PB 119 CG14265-PB 26..108 40..127 136 39.8 Plus