Clone Sequence Records
BO15316.3prime Sequence
515 bp (514 high quality bases) assembled on 2006-06-16
> BO15316.3prime
ATGGTCTAGAAAGCTTGCGCCTGTGCGTTTGCGTTTGTTGGCGGCAGTAT
TCGCCTTCTTCTTGGCTGCCACAGGTGTCTTCTTCTTTTGGGCAACAGGT
GTTTGCTTCTTGGCAGACGCGGCTGCCGCTACTTTGCGTTTGGGAGCAGC
GGTGGTGGTGCGCCTGCGCCGTCTAGCTCTGCGTGCAGCAGTTTTCTTGG
CTTTTTCTGCCTTGGTTGGAGTTGAACTGGAGGTCGTTTCGGCGGAGGAA
CCATCTCCAGAAGTTTCTGAAGAACTACCTGTATCGGAAGCTTCGCCGGA
GGAACTGTCCTCGGAGGTACTAGCATCATCTTCTGAGCTACTGGATGCAC
CAACACCACTTTCCGAACTGGACTCTACATCAGAGTCGTCATAGTAGTCA
TCACCATAGTCGTAATAATCGTAATAGTCATCGTCAGTGTCATCAGCACC
CGTTACGAAGGCAACCAATATGGCCAGGCTTAAAACCAACAGCAGCCTCA
TGTCGACTGATAACT
BO15316.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9040-PA | 486 | CG9040-RA | 1..483 | 501..19 | 2415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9040-RA | 749 | CG9040-RA | 65..547 | 501..19 | 2415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13987942..13988424 | 501..19 | 2415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:10:42 has no hits.
BO15316.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:06 Download gff for
BO15316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-PA | 1..486 | 15..501 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:15 Download gff for
BO15316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-PA | 1..486 | 15..501 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:49:11 Download gff for
BO15316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 65..557 | 9..501 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:32:00 Download gff for
BO15316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 65..557 | 9..501 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:32:00 Download gff for
BO15316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13987942..13988434 | 9..501 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:49:11 Download gff for
BO15316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13981042..13981534 | 9..501 | 99 | | Minus |
BO15316.5prime Sequence
515 bp (514 high quality bases) assembled on 2006-06-16
> BO15316.5prime
GAAGTTATCAGTCGACATGAGGCTGCTGTTGGTTTTAAGCCTGGCCATAT
TGGTTGCCTTCGTAACGGGTGCTGATGACACTGACGATGACTATTACGAT
TATTACGACTATGGTGATGACTACTATGACGACTCTGATGTAGAGTCCAG
TTCGGAAAGTGGTGTTGGTGCATCCAGTAGCTCAGAAGATGATGCTAGTA
CCTCCGAGGACAGTTCCTCCGGCGAAGCTTCCGATACAGGTAGTTCTTCA
GAAACTTCTGGAGATGGTTCCTCCGCCGAAACGACCTCCAGTTCAACTCC
AACCAAGGCAGAAAAAGCCAAGAAAACTGCTGCACGCAGAGCTAGACGGC
GCAGGCGCACCACCACCGCTGCTCCCAAACGCAAAGTAGCGGCAGCCGCG
TCTGCCAAGAAGCAAACACCTGTTGCCCAAAAGAAGAAGACACCTGTGGC
AGCCAAGAAGAAGGCGAATACTGCCGCCAACAAACGCAAACGCACAGGCG
CAAGCTTTCTAGACC
BO15316.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9040-PA | 486 | CG9040-RA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9040-RA | 749 | CG9040-RA | 65..547 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13987942..13988424 | 17..499 | 2415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:02:26 has no hits.
BO15316.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:07 Download gff for
BO15316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-PA | 1..486 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:16 Download gff for
BO15316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-PA | 1..486 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:09:43 Download gff for
BO15316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 65..557 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:58 Download gff for
BO15316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 65..557 | 17..509 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:58 Download gff for
BO15316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13987942..13988434 | 17..509 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:09:43 Download gff for
BO15316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13981042..13981534 | 17..509 | 99 | | Plus |
BO15316.complete Sequence
517 bp assembled on 2007-10-17
GenBank Submission: FJ633404
> BO15316.complete
GAAGTTATCAGTCGACATGAGGCTGCTGTTGGTTTTAAGCCTGGCCATAT
TGGTTGCCTTCGTAACGGGTGCTGATGACACTGACGATGACTATTACGAT
TATTACGACTATGGTGATGACTACTATGACGACTCTGATGTAGAGTCCAG
TTCGGAAAGTGGTGTTGGTGCATCCAGTAGCTCAGAAGATGATGCTAGTA
CCTCCGAGGACAGTTCCTCCGGCGAAGCTTCCGATACAGGTAGTTCTTCA
GAAACTTCTGGAGATGGTTCCTCCGCCGAAACGACCTCCAGTTCAACTCC
AACCAAGGCAGAAAAAGCCAAGAAAACTGCTGCACGCAGAGCTAGACGGC
GCAGGCGCACCACCACCGCTGCTCCCAAACGCAAAGTAGCGGCAGCCGCG
TCTGCCAAGAAGCAAACACCTGTTGCCCAAAAGAAGAAGACACCTGTGGC
AGCCAAGAAGAAGGCGAATACTGCCGCCAACAAACGCAAACGCACAGGCG
CAAGCTTTCTAGACCAT
BO15316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9040-RA | 486 | CG9040-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9040-RA | 749 | CG9040-RA | 65..547 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13987942..13988424 | 17..499 | 2415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:06:29 has no hits.
BO15316.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:45 Download gff for
BO15316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 1..486 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:10 Download gff for
BO15316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 44..536 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:24 Download gff for
BO15316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 65..547 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:03 Download gff for
BO15316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 44..526 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:05 Download gff for
BO15316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9040-RA | 65..547 | 17..501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:05 Download gff for
BO15316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13987942..13988424 | 17..501 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:24 Download gff for
BO15316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13981042..13981524 | 17..501 | 99 | | Plus |
BO15316.pep Sequence
Translation from 16 to 517
> BO15316.pep
MRLLLVLSLAILVAFVTGADDTDDDYYDYYDYGDDYYDDSDVESSSESGV
GASSSSEDDASTSEDSSSGEASDTGSSSETSGDGSSAETTSSSTPTKAEK
AKKTAARRARRRRRTTTAAPKRKVAAAASAKKQTPVAQKKKTPVAAKKKA
NTAANKRKRTGASFLDH
BO15316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9040-PA | 161 | CG9040-PA | 1..161 | 1..161 | 790 | 100 | Plus |
CG17362-PB | 153 | CG17362-PB | 1..153 | 1..161 | 253 | 42.9 | Plus |
CG14265-PB | 119 | CG14265-PB | 26..108 | 40..127 | 136 | 39.8 | Plus |