Clone Sequence Records
BO15318.3prime Sequence
770 bp (769 high quality bases) assembled on 2006-06-16
> BO15318.3prime
ATGGTCTAGAAAGCTTGCGATGGTGGTCGAATAGGACATCAGGGCAATCT
GGGGATGCGACAGCGACACGTCGCGGAACTCATTCGTGAAGGAGAGGATA
AAGAAGCTGAAGACGGTGGCGATGACCCACTCTGAAATAGAGCTGACCAC
GTGGAAGTACCAGCCGCCGTCCGAGGGATACCACTTTCGAGGATTCTGTC
CTTTGAAGAGGATGTGCGACATCACGCCGGTGACCGCCAGCAGGATGAAC
AGGATCGTGCAGACAACGGACATGCCCAGCCGCAAGTGAGCGTTAATGCG
GGTACCCGACATGGGGAAGATCAGATACGAGATGAGCGCCTGCATCCAAA
AGTACAAGGTGCCGCAGCCGAAGCAGCAGAAGGCTCCGATGAAGTGGACA
ATCCGCACGTTCGTCTCCTGAAAGTTGCCCACGAAGCTAATGCCCAGGCA
GGACACCAGTCCGAACCACAAGGCTAGTCGGTTCTGGCGCAGCACCGACC
CGTCCAAATCCGGATGGTGTTCATAAAGCTGCAGCACCTGACGGTAGCGT
ACGTAGATGGTAATTCCAAGCAGAACGCTGCCTATGTTGATAAGCTGCCC
GAACACACAGCTTTCCGGCGAGTAGGTGGCCGCATCGCTGATGTAGGGAA
CCGTGGGCACCACATGCCCCTCCAGCACGGCGAAGATGTACGTGCCAAGA
AAGGTGACCTGGAATATCAGGAACGTGAGCACCGGCAGCAAGTAAACCTG
TGACATGTCGACTGATAACT
BO15318.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-PA | 741 | CG4025-RA | 1..738 | 756..19 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-RA | 1240 | CG4025-RA | 118..855 | 756..19 | 3690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2077452..2077841 | 569..180 | 1950 | 100 | Minus |
X | 23542271 | X | 2077907..2078070 | 182..19 | 820 | 100 | Minus |
X | 23542271 | X | 2077218..2077339 | 691..570 | 610 | 100 | Minus |
X | 23542271 | X | 2077083..2077150 | 756..689 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:13:32 has no hits.
BO15318.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:10 Download gff for
BO15318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-PA | 1..741 | 18..756 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:20 Download gff for
BO15318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-PA | 1..741 | 18..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:49:56 Download gff for
BO15318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 112..863 | 11..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:51 Download gff for
BO15318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 112..863 | 11..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:51 Download gff for
BO15318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2077077..2077147 | 692..763 | 95 | -> | Minus |
X | 2077218..2077339 | 570..691 | 100 | -> | Minus |
X | 2077452..2077839 | 182..569 | 100 | -> | Minus |
X | 2077908..2078078 | 11..181 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:49:56 Download gff for
BO15318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1971110..1971180 | 692..763 | 95 | -> | Minus |
arm_X | 1971251..1971372 | 570..691 | 100 | -> | Minus |
arm_X | 1971485..1971872 | 182..569 | 100 | -> | Minus |
arm_X | 1971941..1972111 | 11..181 | 98 | | Minus |
BO15318.5prime Sequence
770 bp (769 high quality bases) assembled on 2006-06-16
> BO15318.5prime
GAAGTTATCAGTCGACATGTCACAGGTTTACTTGCTGCCGGTGCTCACGT
TCCTGATATTCCAGGTCACCTTTCTTGGCACGTACATCTTCGCCGTGCTG
GAGGGGCATGTGGTGCCCACGGTTCCCTACATCAGCGATGCGGCCACCTA
CTCGCCGGAAAGCTGTGTGTTCGGGCAGCTTATCAACATAGGCAGCGTTC
TGCTTGGAATTACCATCTACGTACGCTACCGTCAGGTGCTGCAGCTTTAT
GAACACCATCCGGATTTGGACGGGTCGGTGCTGCGCCAGAACCGACTAGC
CTTGTGGTTCGGACTGGTGTCCTGCCTGGGCATTAGCTTCGTGGGCAACT
TTCAGGAGACGAACGTGCGGATTGTCCACTTCATCGGAGCCTTCTGCTGC
TTCGGCTGCGGCACCTTGTACTTTTGGATGCAGGCGCTCATCTCGTATCT
GATCTTCCCCATGTCGGGTACCCGCATTAACGCTCACTTGCGGCTGGGCA
TGTCCGTTGTCTGCACGATCCTGTTCATCCTGCTGGCGGTCACCGGCGTG
ATGTCGCACATCCTCTTCAAAGGACAGAATCCTCGAAAGTGGTATCCCTC
GGACGGCGGCTGGTACTTCCACGTGGTCAGCTCTATTTCAGAGTGGGTCA
TCGCCACCGTCTTCAGCTTCTTTATCCTCTCCTTCACGAATGAGTTCCGC
GACGTGTCGCTGTCGCATCCCCAGATTGCCCTGATGTCCTATTCGACCAC
CATCGCAAGCTTTCTAGACC
BO15318.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-PA | 741 | CG4025-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-RA | 1240 | CG4025-RA | 118..855 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2077452..2077841 | 204..593 | 1950 | 100 | Plus |
X | 23542271 | X | 2077907..2078070 | 591..754 | 820 | 100 | Plus |
X | 23542271 | X | 2077218..2077339 | 82..203 | 610 | 100 | Plus |
X | 23542271 | X | 2077083..2077150 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:45:45 has no hits.
BO15318.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:11 Download gff for
BO15318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-PA | 1..741 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:21 Download gff for
BO15318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-PA | 1..741 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:58 Download gff for
BO15318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 112..863 | 10..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:01 Download gff for
BO15318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 112..863 | 10..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:01 Download gff for
BO15318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2077077..2077147 | 10..81 | 95 | -> | Plus |
X | 2077218..2077339 | 82..203 | 100 | -> | Plus |
X | 2077452..2077839 | 204..591 | 100 | -> | Plus |
X | 2077908..2078078 | 592..762 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:58 Download gff for
BO15318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1971251..1971372 | 82..203 | 100 | -> | Plus |
arm_X | 1971110..1971180 | 10..81 | 95 | -> | Plus |
arm_X | 1971485..1971872 | 204..591 | 100 | -> | Plus |
arm_X | 1971941..1972111 | 592..762 | 98 | | Plus |
BO15318.complete Sequence
772 bp (772 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633405
> BO15318.complete
GAAGTTATCAGTCGACATGTCACAGGTTTACTTGCTGCCGGTGCTCACGT
TCCTGATATTCCAGGTCACCTTTCTTGGCACGTACATCTTCGCCGTGCTG
GAGGGGCATGTGGTGCCCACGGTTCCCTACATCAGCGATGCGGCCACCTA
CTCGCCGGAAAGCTGTGTGTTCGGGCAGCTTATCAACATAGGCAGCGTTC
TGCTTGGAATTACCATCTACGTACGCTACCGTCAGGTGCTGCAGCTTTAT
GAACACCATCCGGATTTGGACGGGTCGGTGCTGCGCCAGAACCGACTAGC
CTTGTGGTTCGGACTGGTGTCCTGCCTGGGCATTAGCTTCGTGGGCAACT
TTCAGGAGACGAACGTGCGGATTGTCCACTTCATCGGAGCCTTCTGCTGC
TTCGGCTGCGGCACCTTGTACTTTTGGATGCAGGCGCTCATCTCGTATCT
GATCTTCCCCATGTCGGGTACCCGCATTAACGCTCACTTGCGGCTGGGCA
TGTCCGTTGTCTGCACGATCCTGTTCATCCTGCTGGCGGTCACCGGCGTG
ATGTCGCACATCCTCTTCAAAGGACAGAATCCTCGAAAGTGGTATCCCTC
GGACGGCGGCTGGTACTTCCACGTGGTCAGCTCTATTTCAGAGTGGGTCA
TCGCCACCGTCTTCAGCTTCTTTATCCTCTCCTTCACGAATGAGTTCCGC
GACGTGTCGCTGTCGCATCCCCAGATTGCCCTGATGTCCTATTCGACCAC
CATCGCAAGCTTTCTAGACCAT
BO15318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:15:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-RA | 741 | CG4025-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-RA | 1240 | CG4025-RA | 118..855 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2077452..2077841 | 204..593 | 1950 | 100 | Plus |
X | 23542271 | X | 2077907..2078070 | 591..754 | 820 | 100 | Plus |
X | 23542271 | X | 2077218..2077339 | 82..203 | 610 | 100 | Plus |
X | 23542271 | X | 2077083..2077150 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:15:20 has no hits.
BO15318.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:44 Download gff for
BO15318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 1..741 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:55 Download gff for
BO15318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 96..847 | 10..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:34 Download gff for
BO15318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 118..855 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:44 Download gff for
BO15318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 96..847 | 10..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:06 Download gff for
BO15318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4025-RA | 118..855 | 17..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:06 Download gff for
BO15318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2077083..2077147 | 17..81 | 100 | -> | Plus |
X | 2077218..2077339 | 82..203 | 100 | -> | Plus |
X | 2077452..2077839 | 204..591 | 100 | -> | Plus |
X | 2077908..2078070 | 592..756 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:34 Download gff for
BO15318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1971116..1971180 | 17..81 | 100 | -> | Plus |
arm_X | 1971251..1971372 | 82..203 | 100 | -> | Plus |
arm_X | 1971485..1971872 | 204..591 | 100 | -> | Plus |
arm_X | 1971941..1972103 | 592..756 | 98 | | Plus |
BO15318.pep Sequence
Translation from 16 to 772
> BO15318.pep
MSQVYLLPVLTFLIFQVTFLGTYIFAVLEGHVVPTVPYISDAATYSPESC
VFGQLINIGSVLLGITIYVRYRQVLQLYEHHPDLDGSVLRQNRLALWFGL
VSCLGISFVGNFQETNVRIVHFIGAFCCFGCGTLYFWMQALISYLIFPMS
GTRINAHLRLGMSVVCTILFILLAVTGVMSHILFKGQNPRKWYPSDGGWY
FHVVSSISEWVIATVFSFFILSFTNEFRDVSLSHPQIALMSYSTTIASFL
DH
BO15318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4025-PA | 246 | CG4025-PA | 1..246 | 1..246 | 1294 | 100 | Plus |