Clone Sequence Records
BO15320.3prime Sequence
902 bp (770 high quality bases) assembled on 2006-06-16
> BO15320.3prime
ATGGTCTAGAAAGCTTGCGTCCTCATTGTCACAGAGAGTGGGTCCATTGC
CAATGCAGGAGGCATAGGCCATCAGGTGGGGAATGGTGCTCTGCTGCATC
ACGCCGGTGAAGAGATGACTTTGCGGACCAGTAGCGAAGATTCCCACATC
ATCGCCAGCATGAACGCCAATAGTGCCGTGGATGTAGCTGGGGTGGATGA
AGTCTTCCGCTCCAATTTGATCCGTAAGATCGATGCGCTGGCCGTGCTCA
TCCAGATACTGATTGGTTCCCACTGCATAGTTGAGAGTGGCGTACTTAAC
TCCATTCACATCGGTGTCATCCTGATTGAGACCCAAAATGGGGGTTCCTC
TGCCAGGATAACCAGAGATGGTCAATGGATGGGCGTGATCGGAGGTGACT
ACAATCAGGGTCTCTTCGGGATCGGTTATATCCAGAGCCTCCTGAACAGC
CTGCTCGAACTGAAGCGTCTCTGAGAGCGAATAGGTTGGGGAGTTGAAGT
GGTTGCCATAATCGATGAGTCCACCCTCGACGAACAGAAAGTAGCCACCA
TCGCGTTTGCTGACCACCTCGATTGCTTTGCGCGTCATTTCCGCCAGTGT
GGGCTCCTCCTTGGGATCGGCCATCTTATTGAAGCTCATCACTCCCGAGC
GGAAGGTACCAATCAGGTTGGTGATCTTCGAGACATTCACGCTCAGCAGC
TGGTTACGATTGTAGGCTAAAACACCGCCGGGATGCAGTCCCTGCCAGCG
AGACAGCAGGTTTACTCCGTCGGAACGCTCGCCCTTCTTGTTGAACGGAT
CCGTGATCGTGTTGGGCAGGAACTTGCCAATTCCGCCGCCCAGCATCACA
TCGAAGTTCTTGCCGGGAGCCTGGGTATCAGTTGGGTGCCAATGTCCGTG
CA
BO15320.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3292-PA | 1632 | CG3292-RA | 771..1629 | 877..19 | 4295 | 100 | Minus |
CG3290-PA | 1617 | CG3290-RA | 1513..1565 | 111..59 | 215 | 96.2 | Minus |
CG3264-PA | 1602 | CG3264-RA | 1504..1562 | 120..62 | 195 | 93.2 | Minus |
CG3290-PA | 1617 | CG3290-RA | 1358..1391 | 266..233 | 145 | 97 | Minus |
CG3264-PA | 1602 | CG3264-RA | 754..810 | 867..811 | 135 | 89.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3292-RA | 1713 | CG3292-RA | 788..1672 | 902..19 | 4385 | 99.8 | Minus |
CG3264-RB | 2182 | CG3264-RB | 1306..1616 | 360..50 | 470 | 77.7 | Minus |
CG3264-RA | 1737 | CG3264-RA | 1306..1616 | 360..50 | 470 | 77.7 | Minus |
CG3264-RB | 2182 | CG3264-RB | 766..926 | 896..737 | 255 | 77.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22203985..22204684 | 204..902 | 3435 | 99.7 | Plus |
2R | 25286936 | 2R | 22203735..22203921 | 19..205 | 935 | 100 | Plus |
2R | 25286936 | 2R | 22209030..22209340 | 50..360 | 460 | 76.5 | Plus |
2R | 25286936 | 2R | 22206168..22206532 | 43..407 | 355 | 73.2 | Plus |
2R | 25286936 | 2R | 22209778..22209917 | 737..876 | 250 | 78.6 | Plus |
2R | 25286936 | 2R | 22207006..22207070 | 812..876 | 205 | 87.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:16:54 has no hits.
BO15320.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:12 Download gff for
BO15320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-PA | 746..1632 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:22 Download gff for
BO15320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-PA | 746..1632 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:44:41 Download gff for
BO15320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-RA | 789..1672 | 19..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:12 Download gff for
BO15320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-RA | 789..1672 | 19..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:12 Download gff for
BO15320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22203735..22203919 | 19..203 | 100 | <- | Plus |
2R | 22203985..22204683 | 204..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:44:41 Download gff for
BO15320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18091240..18091424 | 19..203 | 100 | <- | Plus |
arm_2R | 18091490..18092188 | 204..901 | 99 | | Plus |
BO15320.5prime Sequence
870 bp (785 high quality bases) assembled on 2006-06-16
> BO15320.5prime
GAAGTTATCAGTCGACATGAAGACTTTCGTAGCCATTAGCCTGGTGTTAT
GCACCCTGGTGGCCACCTCCTTGGCTGCTTCCATAGACATGCCCGAGATC
CATAATCAGTTCCAGCTGGTGGGAGGATCGGTGAGCACAGCAAAAACCCG
CGAAGGAAACCTTATCGACCCAAATGCCATGGCCAAGGGAAAACCCGGAC
CAGAGGAGGAGAAGAACGCGCAGTTCTGGTACGATCTTGCCTACGAGGAG
ATCGCCAAGCGCCTGGAACAGCCACAATTGGACAAGAGGAAGGCCAAGAA
TGTTATCCTGTTCCTCGGCGATGGCATGTCCCTGTCCACGGTGGCAGCCG
CCCGCATCCACAAGGGTCAGCTTAAGGGCAATACCGGCGAGGAGGACTCC
CTGAGCTTCGAGAAGTTCCCCTACACCGGCCTGAGCAGGACATACTGCTC
CAATGCCCAGGTTCCCGACTCCGCCTGCACTGCCACCGCTTACTTGTGCG
GTGTGAAGACTAATATCGTGGCTTTGGGAATTACGGCGGCAGTGAGCTTC
AACAACTGCAGCGGCAGCGAGGATCCGGCCAATCAGGTGGACTCCATCGC
AGCCTGGGCCCAGGCTGCTGGAAAGGCCACTGGCATTGTGACCACCACCA
CTCTGACCCACGCCAGTCCATCAGGTGCATATGCCAAGACCACCAACCGA
TTCTTCGAGAGCGACACGGATATTCTGACCTACGGCGAGGGACAGAACGA
TCCGGCCACCTGCACGGACATTGCCACCCAACTGATTACCCAGGCTCCCG
GCAAGAACTTCGATGTGATGCTGGGCGGCGGAATTGGCAAGTTCCTGCCC
AACACGATCACGGATCCGTT
BO15320.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3292-PA | 1632 | CG3292-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
CG3264-PA | 1602 | CG3264-RA | 382..467 | 416..501 | 230 | 90.6 | Plus |
CG3264-PA | 1602 | CG3264-RA | 571..656 | 605..690 | 205 | 89.5 | Plus |
CG3290-PA | 1617 | CG3290-RA | 605..659 | 636..690 | 150 | 90.9 | Plus |
CG3264-PA | 1602 | CG3264-RA | 754..810 | 797..853 | 135 | 89.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3292-RA | 1713 | CG3292-RA | 44..897 | 17..870 | 4270 | 100 | Plus |
CG3264-RB | 2182 | CG3264-RB | 297..852 | 289..853 | 910 | 77.9 | Plus |
CG3264-RA | 1737 | CG3264-RA | 297..852 | 289..853 | 910 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22204575..22205006 | 870..439 | 2160 | 100 | Minus |
2R | 25286936 | 2R | 22205070..22205419 | 439..90 | 1750 | 100 | Minus |
2R | 25286936 | 2R | 22209852..22210257 | 853..439 | 615 | 77.1 | Minus |
2R | 25286936 | 2R | 22207006..22207410 | 852..439 | 505 | 75.4 | Minus |
2R | 25286936 | 2R | 22205478..22205550 | 89..17 | 365 | 100 | Minus |
2R | 25286936 | 2R | 22210319..22210469 | 439..289 | 260 | 78.1 | Minus |
X | 23542271 | X | 15588110..15588204 | 416..510 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:46:19 has no hits.
BO15320.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:13 Download gff for
BO15320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:24 Download gff for
BO15320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:18 Download gff for
BO15320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-RA | 44..897 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:29 Download gff for
BO15320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-RA | 44..897 | 17..870 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:29 Download gff for
BO15320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22204575..22205005 | 440..870 | 100 | <- | Minus |
2R | 22205070..22205419 | 90..439 | 100 | <- | Minus |
2R | 22205478..22205550 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:18 Download gff for
BO15320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18092080..18092510 | 440..870 | 100 | <- | Minus |
arm_2R | 18092575..18092924 | 90..439 | 100 | <- | Minus |
arm_2R | 18092983..18093055 | 17..89 | 100 | | Minus |
BO15320.complete Sequence
1663 bp (1663 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ633406
> BO15320.complete
GAAGTTATCAGTCGACATGAAGACTTTCGTAGCCATTAGCCTGGTGTTAT
GCACCCTGGTGGCCACCTCCTTGGCTGCTTCCATAGACATGCCCGAGATC
CATAATCAGTTCCAGCTGGTGGGAGGATCGGTGAGCACAGCAAAAACCCG
CGAAGGAAACCTTATCGACCCAAATGCCATGGCCAAGGGAAAACCCGGAC
CAGAGGAGGAGAAGAACGCGCAGTTCTGGTACGATCTTGCCTACGAGGAG
ATCGCCAAGCGCCTGGAACAGCCACAATTGGACAAGAGGAAGGCCAAGAA
TGTTATCCTGTTCCTCGGCGATGGCATGTCCCTGTCCACGGTGGCAGCCG
CCCGCATCCACAAGGGTCAGCTTAAGGGCAATACCGGCGAGGAGGACTCC
CTGAGCTTCGAGAAGTTCCCCTACACCGGCCTGAGCAGGACATACTGCTC
CAATGCCCAGGTTCCCGACTCCGCCTGCACTGCCACCGCTTACTTGTGCG
GTGTGAAGACTAATATCGTGGCTTTGGGAATTACGGCGGCAGTGAGCTTC
AACAACTGCAGCGGCAGCGAGGATCCGGCCAATCAGGTGGACTCCATCGC
AGCCTGGGCCCAGGCTGCTGGAAAGGCCACTGGCATTGTGACCACCACCA
CTCTGACCCACGCCAGTCCATCAGGTGCATATGCCAAGACCACCAACCGA
TTCTTCGAGAGCGACACGGATATTCTGACCTACGGCGAGGGACAGAACGA
TCCGGCCACCTGCACGGACATTGCCACCCAACTGATTACCCAGGCTCCCG
GCAAGAACTTCGATGTGATGCTGGGCGGCGGAATTGGCAAGTTCCTGCCC
AACACGATCACGGATCCGTTCAACAAGAAGGGCGAGCGTTCCGACGGAGT
AAACCTGCTGTCTCGCTGGCAGGGACTGCATCCCGGCGGTGTTTTAGCCT
ACAATCGTAACCAGCTGCTGAGCGTGAATGTCTCGAAGATCACCAACCTG
ATTGGTACCTTCCGCTCGGGAGTGATGAGCTTCAATAAGATGGCCGATCC
CAAGGAGGAGCCCACACTGGCGGAAATGACGCGCAAAGCAATCGAGGTGG
TCAGCAAACGCGATGGTGGCTACTTTCTGTTCGTCGAGGGTGGACTCATC
GATTATGGCAACCACTTCAACTCCCCAACCTATTCGCTCTCAGAGACGCT
TCAGTTCGAGCAGGCTGTTCAGGAGGCTCTGGATATAACCGATCCCGAAG
AGACCCTGATTGTAGTCACCTCCGATCACGCCCATCCATTGACCATCTCT
GGTTATCCTGGCAGAGGAACCCCCATTTTGGGTCTCAATCAGGATGACAC
CGATGTGAATGGAGTTAAGTACGCCACTCTCAACTATGCAGTGGGAACCA
ATCAGTATCTGGATGAGCACGGCCAGCGCATCGATCTTACGGATCAAATT
GGAGCGGAAGACTTCATCCACCCCAGCTACATCCACGGCACTATTGGCGT
TCATGCTGGCGATGATGTGGGAATCTTCGCTACTGGTCCGCAAAGTCATC
TCTTCACCGGCGTGATGCAGCAGAGCACCATTCCCCACCTGATGGCCTAT
GCCTCCTGCATTGGCAATGGACCCACTCTCTGTGACAATGAGGACGCAAG
CTTTCTAGACCAT
BO15320.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3292-RA | 1632 | CG3292-PA | 1..1629 | 17..1645 | 8145 | 100 | Plus |
CG3264-RB | 1602 | CG3264-PB | 255..884 | 289..927 | 910 | 76.5 | Plus |
CG3264-RA | 1602 | CG3264-PA | 255..884 | 289..927 | 910 | 76.5 | Plus |
CG3264-RB | 1602 | CG3264-PB | 1264..1574 | 1304..1614 | 460 | 76.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3292-RA | 1713 | CG3292-RA | 44..1672 | 17..1645 | 8145 | 100 | Plus |
CG3264-RB | 2182 | CG3264-RB | 297..926 | 289..927 | 910 | 76.5 | Plus |
CG3264-RA | 1737 | CG3264-RA | 297..926 | 289..927 | 910 | 76.5 | Plus |
CG3264-RB | 2182 | CG3264-RB | 1306..1616 | 1304..1614 | 460 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22203985..22205006 | 1460..439 | 5110 | 100 | Minus |
2R | 25286936 | 2R | 22205070..22205419 | 439..90 | 1750 | 100 | Minus |
2R | 25286936 | 2R | 22203735..22203921 | 1645..1459 | 935 | 100 | Minus |
2R | 25286936 | 2R | 22209778..22210257 | 927..439 | 655 | 76.1 | Minus |
2R | 25286936 | 2R | 22207006..22207410 | 852..439 | 505 | 75.4 | Minus |
2R | 25286936 | 2R | 22209030..22209340 | 1614..1304 | 460 | 76.5 | Minus |
2R | 25286936 | 2R | 22205478..22205550 | 89..17 | 365 | 100 | Minus |
2R | 25286936 | 2R | 22206168..22206532 | 1621..1257 | 355 | 73.2 | Minus |
2R | 25286936 | 2R | 22210319..22210469 | 439..289 | 260 | 78.1 | Minus |
X | 23542271 | X | 15588110..15588204 | 416..510 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:55:17 has no hits.
BO15320.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:57 Download gff for
BO15320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-RA | 1..1632 | 17..1646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:10 Download gff for
BO15320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-RA | 27..1655 | 17..1645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:17 Download gff for
BO15320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-RA | 44..1672 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:57 Download gff for
BO15320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-RA | 27..1655 | 17..1645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:30 Download gff for
BO15320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3292-RA | 44..1672 | 17..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:30 Download gff for
BO15320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22203733..22203919 | 1461..1647 | 98 | <- | Minus |
2R | 22203985..22205005 | 440..1460 | 100 | <- | Minus |
2R | 22205070..22205419 | 90..439 | 100 | <- | Minus |
2R | 22205478..22205550 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:17 Download gff for
BO15320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18091238..18091424 | 1461..1647 | 98 | <- | Minus |
arm_2R | 18091490..18092510 | 440..1460 | 100 | <- | Minus |
arm_2R | 18092575..18092924 | 90..439 | 100 | <- | Minus |
arm_2R | 18092983..18093055 | 17..89 | 100 | | Minus |
BO15320.pep Sequence
Translation from 16 to 1663
> BO15320.pep
MKTFVAISLVLCTLVATSLAASIDMPEIHNQFQLVGGSVSTAKTREGNLI
DPNAMAKGKPGPEEEKNAQFWYDLAYEEIAKRLEQPQLDKRKAKNVILFL
GDGMSLSTVAAARIHKGQLKGNTGEEDSLSFEKFPYTGLSRTYCSNAQVP
DSACTATAYLCGVKTNIVALGITAAVSFNNCSGSEDPANQVDSIAAWAQA
AGKATGIVTTTTLTHASPSGAYAKTTNRFFESDTDILTYGEGQNDPATCT
DIATQLITQAPGKNFDVMLGGGIGKFLPNTITDPFNKKGERSDGVNLLSR
WQGLHPGGVLAYNRNQLLSVNVSKITNLIGTFRSGVMSFNKMADPKEEPT
LAEMTRKAIEVVSKRDGGYFLFVEGGLIDYGNHFNSPTYSLSETLQFEQA
VQEALDITDPEETLIVVTSDHAHPLTISGYPGRGTPILGLNQDDTDVNGV
KYATLNYAVGTNQYLDEHGQRIDLTDQIGAEDFIHPSYIHGTIGVHAGDD
VGIFATGPQSHLFTGVMQQSTIPHLMAYASCIGNGPTLCDNEDASFLDH
BO15320.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3292-PA | 543 | CG3292-PA | 1..543 | 1..543 | 2833 | 100 | Plus |
CG3290-PA | 538 | CG3290-PA | 12..531 | 7..539 | 1781 | 64 | Plus |
CG3264-PB | 533 | CG3264-PB | 13..533 | 9..541 | 1772 | 63.7 | Plus |
CG3264-PA | 533 | CG3264-PA | 13..533 | 9..541 | 1772 | 63.7 | Plus |
CG5656-PA | 523 | CG5656-PA | 36..514 | 64..540 | 1102 | 47.3 | Plus |