Clone Sequence Records
BO15321.3prime Sequence
794 bp (789 high quality bases) assembled on 2006-06-16
> BO15321.3prime
ATGGTCTAGAAAGCTTGCCCAGCTGTTCACGTCGTACCACTCGGATGTTG
AGCAGAGGTTACCAAACTCGCCATTGGTGCCCGATCCGCAGCCCTGTGCT
CCCCAGTCACAGCTGGAGTAGATCTGGCGTCCGATCATATTGGTGGTAGC
ATAGTTGCAGGCCACCAGCACTTGGTTCCATCCATCGCGATTGTACCGAG
CAGCAGCACATCCCAAGCGGGTGTTCCTCTCCGACATCATCACGGTGAAG
TGGCCAATGGCAGGTCCGTTATATCCGGATGGGTATCCGCCGGCAATAAT
ACCGGCGTTGGAGTTGTGCACCTCATCGAACCACATCTGCACGCTGTTGT
CCAGGATGTAGCCCATGTCGGGCAGGTCGCCGGAGTAGGCCTGCCATGCC
AGATTCTGGCCGGAGTACTTGAAGGCGTCGGTGTTGTGGCAGCTATCGTG
CACCATGTTGCACTGGCGCACATTCAGGGAGGCCAGATAGGCCAGCTCAT
CGTCCCACTCCATGGTGGCCATACGGCAGGCGGCATTGTGATTGGAATCG
TAGCCACCGGCAATGTAGTTCCTCTTGTCGTTGTGCGAGTGGACAAAGAC
CCACTTGTAGTCATCGTTGATGTCGATCAGCTCGGCATCGCCGGGACAGC
TACTGTCCCACCAGTTGCTATGCCCACAGGCGATGTGGGAGCCACCGTTG
CAGATGTCCGACGAACAATAGTCGGTGGCCTGGGCCAGGGCCAAGGAAAC
GATCAGGATGGCAAGCAGAGCGAGTTTCATGTCGACTGATAACT
BO15321.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9540-PA | 765 | Ag5r2-RA | 1..762 | 780..19 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r2-RA | 849 | CG9540-RA | 47..808 | 780..19 | 3810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14783489..14784006 | 263..780 | 2590 | 100 | Plus |
| X | 23542271 | X | 14783003..14783246 | 19..262 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:44:00 has no hits.
BO15321.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:14 Download gff for
BO15321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-PA | 1..765 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:25 Download gff for
BO15321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9540-PA | 1..765 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:49:32 Download gff for
BO15321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-RA | 40..815 | 12..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:03:41 Download gff for
BO15321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-RA | 40..815 | 12..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:03:41 Download gff for
BO15321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14782996..14783246 | 12..262 | 98 | <- | Plus |
| X | 14783489..14784013 | 263..787 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:49:32 Download gff for
BO15321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14677029..14677279 | 12..262 | 98 | <- | Plus |
| arm_X | 14677522..14678046 | 263..787 | 99 | | Plus |
BO15321.5prime Sequence
794 bp (778 high quality bases) assembled on 2006-06-16
> BO15321.5prime
GAAGTTATCAGTCGACATGAAACTCGCTCTGCTTGCCATCCTGATCGTTT
CCTTGGCCCTGGCCCAGGCCACCGACTATTGTTCGTCGGACATCTGCAAC
GGTGGCTCCCACATCGCCTGTGGGCATAGCAACTGGTGGGACAGTAGCTG
TCCCGGCGATGCCGAGCTGATCGACATCAACGATGACTACAAGTGGGTCT
TTGTCCACTCGCACAACGACAAGAGGAACTACATTGCCGGTGGCTACGAT
TCCAATCACAATGCCGCCTGCCGTATGGCCACCATGGAGTGGGACGATGA
GCTGGCCTATCTGGCCTCCCTGAATGTGCGCCAGTGCAACATGGTGCACG
ATAGCTGCCACAACACCGACGCCTTCAAGTACTCCGGCCAGAATCTGGCA
TGGCAGGCCTACTCCGGCGACCTGCCCGACATGGGCTACATCCTGGACAA
CAGCGTGCAGATGTGGTTCGATGAGGTGCACAACTCCAACGCCGGTATTA
TTGCCGGCGGATACCCATCCGGATATAACGGACCTGCCATTGGCCACTTC
ACCGTGATGATGTCGGAGAGGAACACCCGCTTGGGATGTGCTGCTGCTCG
GTACAATCGCGATGGATGGAACCAAGTGCTGGTGGCCTGCAACTATGCTA
CCACCAATATGATCGGACGCCAGATCTACTCCAGCTGTGACTGGGGAGCA
CAGGGCTGCGGATCGGGCACCAATGGCGAGTTTGGTAACCTCTGCTCAAC
ATCCGAGTGGTACGACGTGAACAGCTGGGCAAGCTTTCTAGACC
BO15321.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9540-PA | 765 | Ag5r2-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r2-RA | 849 | CG9540-RA | 47..808 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14783489..14784006 | 534..17 | 2590 | 100 | Minus |
| X | 23542271 | X | 14783003..14783246 | 778..535 | 1220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:04:30 has no hits.
BO15321.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:15 Download gff for
BO15321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-PA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:27 Download gff for
BO15321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9540-PA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:58:29 Download gff for
BO15321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-RA | 40..815 | 10..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:58 Download gff for
BO15321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-RA | 40..815 | 10..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:58 Download gff for
BO15321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14782996..14783246 | 535..785 | 98 | <- | Minus |
| X | 14783489..14784013 | 10..534 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:58:29 Download gff for
BO15321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14677029..14677279 | 535..785 | 98 | <- | Minus |
| arm_X | 14677522..14678046 | 10..534 | 99 | | Minus |
BO15321.complete Sequence
796 bp (796 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633407
> BO15321.complete
GAAGTTATCAGTCGACATGAAACTCGCTCTGCTTGCCATCCTGATCGTTT
CCTTGGCCCTGGCCCAGGCCACCGACTATTGTTCGTCGGACATCTGCAAC
GGTGGCTCCCACATCGCCTGTGGGCATAGCAACTGGTGGGACAGTAGCTG
TCCCGGCGATGCCGAGCTGATCGACATCAACGATGACTACAAGTGGGTCT
TTGTCCACTCGCACAACGACAAGAGGAACTACATTGCCGGTGGCTACGAT
TCCAATCACAATGCCGCCTGCCGTATGGCCACCATGGAGTGGGACGATGA
GCTGGCCTATCTGGCCTCCCTGAATGTGCGCCAGTGCAACATGGTGCACG
ATAGCTGCCACAACACCGACGCCTTCAAGTACTCCGGCCAGAATCTGGCA
TGGCAGGCCTACTCCGGCGACCTGCCCGACATGGGCTACATCCTGGACAA
CAGCGTGCAGATGTGGTTCGATGAGGTGCACAACTCCAACGCCGGTATTA
TTGCCGGCGGATACCCATCCGGATATAACGGACCTGCCATTGGCCACTTC
ACCGTGATGATGTCGGAGAGGAACACCCGCTTGGGATGTGCTGCTGCTCG
GTACAATCGCGATGGATGGAACCAAGTGCTGGTGGCCTGCAACTATGCTA
CCACCAATATGATCGGACGCCAGATCTACTCCAGCTGTGACTGGGGAGCA
CAGGGCTGCGGATCGGGCACCAATGGCGAGTTTGGTAACCTCTGCTCAAC
ATCCGAGTGGTACGACGTGAACAGCTGGGCAAGCTTTCTAGACCAT
BO15321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r2-RA | 765 | CG9540-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r2-RA | 849 | CG9540-RA | 47..808 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14783489..14784006 | 534..17 | 2590 | 100 | Minus |
| X | 23542271 | X | 14783003..14783246 | 778..535 | 1220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:22:54 has no hits.
BO15321.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:47 Download gff for
BO15321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-RA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:27 Download gff for
BO15321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-RA | 30..805 | 10..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:06 Download gff for
BO15321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-RA | 47..808 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:47 Download gff for
BO15321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-RA | 30..805 | 10..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:35 Download gff for
BO15321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-RA | 47..808 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:35 Download gff for
BO15321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14783001..14783246 | 535..780 | 99 | <- | Minus |
| X | 14783489..14784006 | 17..534 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:06 Download gff for
BO15321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14677034..14677279 | 535..780 | 99 | <- | Minus |
| arm_X | 14677522..14678039 | 17..534 | 100 | | Minus |
BO15321.pep Sequence
Translation from 16 to 796
> BO15321.pep
MKLALLAILIVSLALAQATDYCSSDICNGGSHIACGHSNWWDSSCPGDAE
LIDINDDYKWVFVHSHNDKRNYIAGGYDSNHNAACRMATMEWDDELAYLA
SLNVRQCNMVHDSCHNTDAFKYSGQNLAWQAYSGDLPDMGYILDNSVQMW
FDEVHNSNAGIIAGGYPSGYNGPAIGHFTVMMSERNTRLGCAAARYNRDG
WNQVLVACNYATTNMIGRQIYSSCDWGAQGCGSGTNGEFGNLCSTSEWYD
VNSWASFLDH
BO15321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r2-PA | 254 | CG9540-PA | 1..254 | 1..254 | 1425 | 100 | Plus |
| Ag5r-PC | 256 | CG9538-PC | 10..253 | 9..253 | 637 | 50.4 | Plus |
| Ag5r-PB | 256 | CG9538-PB | 10..253 | 9..253 | 637 | 50.4 | Plus |
| Ag5r-PA | 256 | CG9538-PA | 10..253 | 9..253 | 637 | 50.4 | Plus |
| CG32679-PA | 254 | CG32679-PA | 10..253 | 5..255 | 466 | 38.1 | Plus |
