Clone BO15328 Report

Search the DGRC for BO15328

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG5506-RA
Protein status:BO15328.pep: validated full length
Sequenced Size:574

Clone Sequence Records

BO15328.5prime Sequence

572 bp (571 high quality bases) assembled on 2006-06-16

> BO15328.5prime
GAAGTTATCAGTCGACATGTACAAACTTGTCTGTGTAGTTTTGGCCCTGT
TTGCAGTTGCCTACGCGGTTCCCTCGACTTATGATACCGAGCACGTGTGG
AAGGCTGGTAACCTGTCCTACGTTATTCCCTATAATGCCGTTGTGGGTGG
CTTCGATCCCTACGGATTTACCACCTATGTTGGTCGTGTTAAGTACTCCA
ATAGCATCCTGCCGGCTCGAGTTGTTGCGGAAACTGGTACTGCTTACTTC
AATACGGAAACCACATCCTCGAAGCTCCTCGTCTACGACATCCTAGTGGC
TGAGCGGGATGTAAATTACGTGTGGGTCAGGAGCTTCGATGGATTCTATG
AAAAGGGAGCCGTTGCCGTGGGCACGACGGTCAAAAATGAGCGGGTGTTC
TGCTGCCGTGCTAAGACCGATGGAGGCATCCTAATCGGCACCCTGCTCCT
TAGCAGCCAGAAGGTGTGCATCATCAAGCACGAGAGCTTGGCCCTGCGAA
AGTTCGACAAATATGAAGTTCTGGTGGCCCAGCCTAAAGGCAATGGAACA
TACTACGCAAGCTTTCTAGACC

BO15328.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-PA 543 CG5506-RA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-RA 661 CG5506-RA 32..571 17..556 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17883739..17884212 556..83 2370 100 Minus
3L 28110227 3L 17884279..17884345 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-02 07:46:10 has no hits.

BO15328.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:21 Download gff for BO15328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-PA 1..543 17..560 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:34 Download gff for BO15328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-PA 1..543 17..560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:00 Download gff for BO15328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 23..577 8..564 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:52 Download gff for BO15328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 23..577 8..564 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:52 Download gff for BO15328.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17883733..17884211 84..564 99 <- Minus
3L 17884279..17884354 8..83 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:00 Download gff for BO15328.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17876833..17877311 84..564 99 <- Minus
arm_3L 17877379..17877454 8..83 96   Minus

BO15328.3prime Sequence

572 bp (571 high quality bases) assembled on 2006-06-16

> BO15328.3prime
ATGGTCTAGAAAGCTTGCGTAGTATGTTCCATTGCCTTTAGGCTGGGCCA
CCAGAACTTCATATTTGTCGAACTTTCGCAGGGCCAAGCTCTCGTGCTTG
ATGATGCACACCTTCTGGCTGCTAAGGAGCAGGGTGCCGATTAGGATGCC
TCCATCGGTCTTAGCACGGCAGCAGAACACCCGCTCATTTTTGACCGTCG
TGCCCACGGCAACGGCTCCCTTTTCATAGAATCCATCGAAGCTCCTGACC
CACACGTAATTTACATCCCGCTCAGCCACTAGGATGTCGTAGACGAGGAG
CTTCGAGGATGTGGTTTCCGTATTGAAGTAAGCAGTACCAGTTTCCGCAA
CAACTCGAGCCGGCAGGATGCTATTGGAGTACTTAACACGACCAACATAG
GTGGTAAATCCGTAGGGATCGAAGCCACCCACAACGGCATTATAGGGAAT
AACGTAGGACAGGTTACCAGCCTTCCACACGTGCTCGGTATCATAAGTCG
AGGGAACCGCGTAGGCAACTGCAAACAGGGCCAAAACTACACAGACAAGT
TTGTACATGTCGACTGATAACT

BO15328.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-PA 543 CG5506-RA 1..540 558..19 2700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-RA 661 CG5506-RA 32..571 558..19 2700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17883739..17884212 19..492 2370 100 Plus
3L 28110227 3L 17884279..17884345 492..558 335 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:07:26 has no hits.

BO15328.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:20 Download gff for BO15328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-PA 1..543 15..558 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:33 Download gff for BO15328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-PA 1..543 15..558 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:33:43 Download gff for BO15328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 23..577 11..567 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:56 Download gff for BO15328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 23..577 11..567 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:56 Download gff for BO15328.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17883733..17884211 11..491 99 <- Plus
3L 17884279..17884354 492..567 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:33:43 Download gff for BO15328.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17876833..17877311 11..491 99 <- Plus
arm_3L 17877379..17877454 492..567 96   Plus

BO15328.complete Sequence

574 bp (574 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633410

> BO15328.complete
GAAGTTATCAGTCGACATGTACAAACTTGTCTGTGTAGTTTTGGCCCTGT
TTGCAGTTGCCTACGCGGTTCCCTCGACTTATGATACCGAGCACGTGTGG
AAGGCTGGTAACCTGTCCTACGTTATTCCCTATAATGCCGTTGTGGGTGG
CTTCGATCCCTACGGATTTACCACCTATGTTGGTCGTGTTAAGTACTCCA
ATAGCATCCTGCCGGCTCGAGTTGTTGCGGAAACTGGTACTGCTTACTTC
AATACGGAAACCACATCCTCGAAGCTCCTCGTCTACGACATCCTAGTGGC
TGAGCGGGATGTAAATTACGTGTGGGTCAGGAGCTTCGATGGATTCTATG
AAAAGGGAGCCGTTGCCGTGGGCACGACGGTCAAAAATGAGCGGGTGTTC
TGCTGCCGTGCTAAGACCGATGGAGGCATCCTAATCGGCACCCTGCTCCT
TAGCAGCCAGAAGGTGTGCATCATCAAGCACGAGAGCTTGGCCCTGCGAA
AGTTCGACAAATATGAAGTTCTGGTGGCCCAGCCTAAAGGCAATGGAACA
TACTACGCAAGCTTTCTAGACCAT

BO15328.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-RA 543 CG5506-PA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-RA 661 CG5506-RA 32..571 17..556 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17883739..17884212 556..83 2370 100 Minus
3L 28110227 3L 17884279..17884345 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:20:47 has no hits.

BO15328.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:58 Download gff for BO15328.complete
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 1..543 17..560 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:32 Download gff for BO15328.complete
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 21..575 8..564 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:36 Download gff for BO15328.complete
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 32..571 17..558 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:59 Download gff for BO15328.complete
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 7..561 8..564 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:27 Download gff for BO15328.complete
Subject Subject Range Query Range Percent Splice Strand
CG5506-RA 32..571 17..558 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:27 Download gff for BO15328.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17883737..17884211 84..558 99 <- Minus
3L 17884279..17884345 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:36 Download gff for BO15328.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17876837..17877311 84..558 99 <- Minus
arm_3L 17877379..17877445 17..83 100   Minus

BO15328.pep Sequence

Translation from 16 to 574

> BO15328.pep
MYKLVCVVLALFAVAYAVPSTYDTEHVWKAGNLSYVIPYNAVVGGFDPYG
FTTYVGRVKYSNSILPARVVAETGTAYFNTETTSSKLLVYDILVAERDVN
YVWVRSFDGFYEKGAVAVGTTVKNERVFCCRAKTDGGILIGTLLLSSQKV
CIIKHESLALRKFDKYEVLVAQPKGNGTYYASFLDH

BO15328.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5506-PA 180 CG5506-PA 1..180 1..180 938 100 Plus
CG16775-PB 191 CG16775-PB 9..175 4..172 400 48.5 Plus
CG32633-PB 285 CG32633-PB 14..145 37..174 165 35.5 Plus
CG32633-PA 285 CG32633-PA 14..145 37..174 165 35.5 Plus
CG31086-PB 148 CG31086-PB 14..141 37..169 155 33.1 Plus