Clone Sequence Records
BO15328.5prime Sequence
572 bp (571 high quality bases) assembled on 2006-06-16
> BO15328.5prime
GAAGTTATCAGTCGACATGTACAAACTTGTCTGTGTAGTTTTGGCCCTGT
TTGCAGTTGCCTACGCGGTTCCCTCGACTTATGATACCGAGCACGTGTGG
AAGGCTGGTAACCTGTCCTACGTTATTCCCTATAATGCCGTTGTGGGTGG
CTTCGATCCCTACGGATTTACCACCTATGTTGGTCGTGTTAAGTACTCCA
ATAGCATCCTGCCGGCTCGAGTTGTTGCGGAAACTGGTACTGCTTACTTC
AATACGGAAACCACATCCTCGAAGCTCCTCGTCTACGACATCCTAGTGGC
TGAGCGGGATGTAAATTACGTGTGGGTCAGGAGCTTCGATGGATTCTATG
AAAAGGGAGCCGTTGCCGTGGGCACGACGGTCAAAAATGAGCGGGTGTTC
TGCTGCCGTGCTAAGACCGATGGAGGCATCCTAATCGGCACCCTGCTCCT
TAGCAGCCAGAAGGTGTGCATCATCAAGCACGAGAGCTTGGCCCTGCGAA
AGTTCGACAAATATGAAGTTCTGGTGGCCCAGCCTAAAGGCAATGGAACA
TACTACGCAAGCTTTCTAGACC
BO15328.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-PA | 543 | CG5506-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-RA | 661 | CG5506-RA | 32..571 | 17..556 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17883739..17884212 | 556..83 | 2370 | 100 | Minus |
3L | 28110227 | 3L | 17884279..17884345 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 07:46:10 has no hits.
BO15328.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:21 Download gff for
BO15328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-PA | 1..543 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:34 Download gff for
BO15328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-PA | 1..543 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:00 Download gff for
BO15328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 23..577 | 8..564 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:52 Download gff for
BO15328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 23..577 | 8..564 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:52 Download gff for
BO15328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17883733..17884211 | 84..564 | 99 | <- | Minus |
3L | 17884279..17884354 | 8..83 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:00 Download gff for
BO15328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17876833..17877311 | 84..564 | 99 | <- | Minus |
arm_3L | 17877379..17877454 | 8..83 | 96 | | Minus |
BO15328.3prime Sequence
572 bp (571 high quality bases) assembled on 2006-06-16
> BO15328.3prime
ATGGTCTAGAAAGCTTGCGTAGTATGTTCCATTGCCTTTAGGCTGGGCCA
CCAGAACTTCATATTTGTCGAACTTTCGCAGGGCCAAGCTCTCGTGCTTG
ATGATGCACACCTTCTGGCTGCTAAGGAGCAGGGTGCCGATTAGGATGCC
TCCATCGGTCTTAGCACGGCAGCAGAACACCCGCTCATTTTTGACCGTCG
TGCCCACGGCAACGGCTCCCTTTTCATAGAATCCATCGAAGCTCCTGACC
CACACGTAATTTACATCCCGCTCAGCCACTAGGATGTCGTAGACGAGGAG
CTTCGAGGATGTGGTTTCCGTATTGAAGTAAGCAGTACCAGTTTCCGCAA
CAACTCGAGCCGGCAGGATGCTATTGGAGTACTTAACACGACCAACATAG
GTGGTAAATCCGTAGGGATCGAAGCCACCCACAACGGCATTATAGGGAAT
AACGTAGGACAGGTTACCAGCCTTCCACACGTGCTCGGTATCATAAGTCG
AGGGAACCGCGTAGGCAACTGCAAACAGGGCCAAAACTACACAGACAAGT
TTGTACATGTCGACTGATAACT
BO15328.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-PA | 543 | CG5506-RA | 1..540 | 558..19 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-RA | 661 | CG5506-RA | 32..571 | 558..19 | 2700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17883739..17884212 | 19..492 | 2370 | 100 | Plus |
3L | 28110227 | 3L | 17884279..17884345 | 492..558 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:07:26 has no hits.
BO15328.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:20 Download gff for
BO15328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-PA | 1..543 | 15..558 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:33 Download gff for
BO15328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-PA | 1..543 | 15..558 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:33:43 Download gff for
BO15328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 23..577 | 11..567 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:56 Download gff for
BO15328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 23..577 | 11..567 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:56 Download gff for
BO15328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17883733..17884211 | 11..491 | 99 | <- | Plus |
3L | 17884279..17884354 | 492..567 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:33:43 Download gff for
BO15328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17876833..17877311 | 11..491 | 99 | <- | Plus |
arm_3L | 17877379..17877454 | 492..567 | 96 | | Plus |
BO15328.complete Sequence
574 bp (574 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633410
> BO15328.complete
GAAGTTATCAGTCGACATGTACAAACTTGTCTGTGTAGTTTTGGCCCTGT
TTGCAGTTGCCTACGCGGTTCCCTCGACTTATGATACCGAGCACGTGTGG
AAGGCTGGTAACCTGTCCTACGTTATTCCCTATAATGCCGTTGTGGGTGG
CTTCGATCCCTACGGATTTACCACCTATGTTGGTCGTGTTAAGTACTCCA
ATAGCATCCTGCCGGCTCGAGTTGTTGCGGAAACTGGTACTGCTTACTTC
AATACGGAAACCACATCCTCGAAGCTCCTCGTCTACGACATCCTAGTGGC
TGAGCGGGATGTAAATTACGTGTGGGTCAGGAGCTTCGATGGATTCTATG
AAAAGGGAGCCGTTGCCGTGGGCACGACGGTCAAAAATGAGCGGGTGTTC
TGCTGCCGTGCTAAGACCGATGGAGGCATCCTAATCGGCACCCTGCTCCT
TAGCAGCCAGAAGGTGTGCATCATCAAGCACGAGAGCTTGGCCCTGCGAA
AGTTCGACAAATATGAAGTTCTGGTGGCCCAGCCTAAAGGCAATGGAACA
TACTACGCAAGCTTTCTAGACCAT
BO15328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-RA | 543 | CG5506-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-RA | 661 | CG5506-RA | 32..571 | 17..556 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17883739..17884212 | 556..83 | 2370 | 100 | Minus |
3L | 28110227 | 3L | 17884279..17884345 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:20:47 has no hits.
BO15328.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:58 Download gff for
BO15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 1..543 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:32 Download gff for
BO15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 21..575 | 8..564 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:36 Download gff for
BO15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 32..571 | 17..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:59 Download gff for
BO15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 7..561 | 8..564 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:27 Download gff for
BO15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5506-RA | 32..571 | 17..558 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:27 Download gff for
BO15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17883737..17884211 | 84..558 | 99 | <- | Minus |
3L | 17884279..17884345 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:36 Download gff for
BO15328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17876837..17877311 | 84..558 | 99 | <- | Minus |
arm_3L | 17877379..17877445 | 17..83 | 100 | | Minus |
BO15328.pep Sequence
Translation from 16 to 574
> BO15328.pep
MYKLVCVVLALFAVAYAVPSTYDTEHVWKAGNLSYVIPYNAVVGGFDPYG
FTTYVGRVKYSNSILPARVVAETGTAYFNTETTSSKLLVYDILVAERDVN
YVWVRSFDGFYEKGAVAVGTTVKNERVFCCRAKTDGGILIGTLLLSSQKV
CIIKHESLALRKFDKYEVLVAQPKGNGTYYASFLDH
BO15328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5506-PA | 180 | CG5506-PA | 1..180 | 1..180 | 938 | 100 | Plus |
CG16775-PB | 191 | CG16775-PB | 9..175 | 4..172 | 400 | 48.5 | Plus |
CG32633-PB | 285 | CG32633-PB | 14..145 | 37..174 | 165 | 35.5 | Plus |
CG32633-PA | 285 | CG32633-PA | 14..145 | 37..174 | 165 | 35.5 | Plus |
CG31086-PB | 148 | CG31086-PB | 14..141 | 37..169 | 155 | 33.1 | Plus |