Clone Sequence Records
BO15329.3prime Sequence
560 bp (559 high quality bases) assembled on 2006-06-16
> BO15329.3prime
ATGGTCTAGAAAGCTTGCCTGGACCGTCTCGATGAGGGTCTTCACGTAGT
CATCGTATTGGGCCTGGAAGAAGTTGCCGGCCACGGGACCGCCGAAGCTG
TACTTCTGGATGTAGTCGCGGGCCTTGACGTTGATGCGGCCAGTGCGGCT
GGTCTTGGACACGAACTTCTCGGTGGTGATCTTGTCGTTCTGCTTGAACA
CCAGGAAGACGTAGCGGTGCAGGCCGGTTCCCTCGCGGGGTCCAGCACCG
ATGTACTCGGCGATGGTCTGGCCCTCGGACACCTTGTTGCCGGGAATGTT
GATCACCAGCCAGTGGAGCAGCTCACGGAACTTGGGGTCCTCGCGGCTGG
GTGCGTCGGGGTCCACCAACAGGATGGTGTACAGGGAGTTGGGCTCGGCA
TCGAAGACGACAGTGGGCTGGTCCTTCACCTGAGTGGGAGTCAGCTCCTT
GCCCAGCTCAACCTGAACGCCGGAAGGATAGGTGATGGTGGCCTTGGAGG
CGGGCTTGACGTCGATGATGTCGGGAATAATGCCGGCGGTGTCCATGTCG
ACTGATAACT
BO15329.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18594-PA | 531 | CG18594-RA | 1..528 | 546..19 | 2640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pebp1-RA | 646 | CG18594-RA | 56..585 | 548..19 | 2650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22466089..22466618 | 548..19 | 2650 | 100 | Minus |
| 3R | 32079331 | 3R | 6344653..6344827 | 364..190 | 215 | 74.9 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:10:16 has no hits.
BO15329.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:22 Download gff for
BO15329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-PA | 1..531 | 15..546 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:36 Download gff for
BO15329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-PA | 1..531 | 15..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:49:06 Download gff for
BO15329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 47..591 | 12..557 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:31:58 Download gff for
BO15329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 47..591 | 12..557 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:31:58 Download gff for
BO15329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22466080..22466624 | 12..557 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:49:06 Download gff for
BO15329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18291802..18292346 | 12..557 | 98 | | Minus |
BO15329.5prime Sequence
560 bp (559 high quality bases) assembled on 2006-06-16
> BO15329.5prime
GAAGTTATCAGTCGACATGGACACCGCCGGCATTATTCCCGACATCATCG
ACGTCAAGCCCGCCTCCAAGGCCACCATCACCTATCCTTCCGGCGTTCAG
GTTGAGCTGGGCAAGGAGCTGACTCCCACTCAGGTGAAGGACCAGCCCAC
TGTCGTCTTCGATGCCGAGCCCAACTCCCTGTACACCATCCTGTTGGTGG
ACCCCGACGCACCCAGCCGCGAGGACCCCAAGTTCCGTGAGCTGCTCCAC
TGGCTGGTGATCAACATTCCCGGCAACAAGGTGTCCGAGGGCCAGACCAT
CGCCGAGTACATCGGTGCTGGACCCCGCGAGGGAACCGGCCTGCACCGCT
ACGTCTTCCTGGTGTTCAAGCAGAACGACAAGATCACCACCGAGAAGTTC
GTGTCCAAGACCAGCCGCACTGGCCGCATCAACGTCAAGGCCCGCGACTA
CATCCAGAAGTACAGCTTCGGCGGTCCCGTGGCCGGCAACTTCTTCCAGG
CCCAATACGATGACTACGTGAAGACCCTCATCGAGACGGTCCAGGCAAGC
TTTCTAGACC
BO15329.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18594-PA | 531 | CG18594-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pebp1-RA | 646 | CG18594-RA | 56..585 | 15..544 | 2650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22466089..22466618 | 15..544 | 2650 | 100 | Plus |
| 3R | 32079331 | 3R | 6344653..6344827 | 199..373 | 215 | 74.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:47:16 has no hits.
BO15329.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:24 Download gff for
BO15329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-PA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:37 Download gff for
BO15329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-PA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:33 Download gff for
BO15329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 47..591 | 6..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:07 Download gff for
BO15329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 47..591 | 6..551 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:07 Download gff for
BO15329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22466080..22466624 | 6..551 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:33 Download gff for
BO15329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18291802..18292346 | 6..551 | 98 | | Plus |
BO15329.complete Sequence
562 bp assembled on 2007-10-17
GenBank Submission: FJ633411
> BO15329.complete
GAAGTTATCAGTCGACATGGACACCGCCGGCATTATTCCCGACATCATCG
ACGTCAAGCCCGCCTCCAAGGCCACCATCACCTATCCTTCCGGCGTTCAG
GTTGAGCTGGGCAAGGAGCTGACTCCCACTCAGGTGAAGGACCAGCCCAC
TGTCGTCTTCGATGCCGAGCCCAACTCCCTGTACACCATCCTGTTGGTGG
ACCCCGACGCACCCAGCCGCGAGGACCCCAAGTTCCGTGAGCTGCTCCAC
TGGCTGGTGATCAACATTCCCGGCAACAAGGTGTCCGAGGGCCAGACCAT
CGCCGAGTACATCGGTGCTGGACCCCGCGAGGGAACCGGCCTGCACCGCT
ACGTCTTCCTGGTGTTCAAGCAGAACGACAAGATCACCACCGAGAAGTTC
GTGTCCAAGACCAGCCGCACTGGCCGCATCAACGTCAAGGCCCGCGACTA
CATCCAGAAGTACAGCTTCGGCGGTCCCGTGGCCGGCAACTTCTTCCAGG
CCCAATACGATGACTACGTGAAGACCCTCATCGAGACGGTCCAGGCAAGC
TTTCTAGACCAT
BO15329.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pebp1-RA | 531 | CG18594-PA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pebp1-RA | 646 | CG18594-RA | 56..585 | 15..544 | 2650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22466089..22466618 | 15..544 | 2650 | 100 | Plus |
| 3R | 32079331 | 3R | 6344653..6344827 | 199..373 | 215 | 74.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:08:50 has no hits.
BO15329.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:46 Download gff for
BO15329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-RA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:25 Download gff for
BO15329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-RA | 1..534 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:53 Download gff for
BO15329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 58..585 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:21 Download gff for
BO15329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18594-RA | 1..528 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:26 Download gff for
BO15329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pebp1-RA | 58..585 | 17..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:26 Download gff for
BO15329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22466091..22466618 | 17..546 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:53 Download gff for
BO15329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18291813..18292340 | 17..546 | 99 | | Plus |
BO15329.pep Sequence
Translation from 16 to 562
> BO15329.pep
MDTAGIIPDIIDVKPASKATITYPSGVQVELGKELTPTQVKDQPTVVFDA
EPNSLYTILLVDPDAPSREDPKFRELLHWLVINIPGNKVSEGQTIAEYIG
AGPREGTGLHRYVFLVFKQNDKITTEKFVSKTSRTGRINVKARDYIQKYS
FGGPVAGNFFQAQYDDYVKTLIETVQASFLDH
BO15329.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pebp1-PA | 176 | CG18594-PA | 1..176 | 1..176 | 912 | 100 | Plus |
| CG10298-PA | 187 | CG10298-PA | 13..179 | 6..171 | 525 | 58.7 | Plus |
| CG7054-PA | 179 | CG7054-PA | 4..177 | 6..175 | 477 | 49.4 | Plus |
| CG6180-PA | 257 | CG6180-PA | 80..257 | 1..177 | 471 | 48.9 | Plus |
| CG17919-PA | 202 | CG17919-PA | 29..195 | 6..171 | 465 | 51.5 | Plus |
