Clone Sequence Records
BO15330.3prime Sequence
922 bp (768 high quality bases) assembled on 2006-06-16
> BO15330.3prime
ATGGTCTAGAAAGCTTGCATATTTCTCAGTCGTCACTTCGCTCGGCGGCG
GCGACTCATTTGTTCGATTTTGAACATCGGTCACGGTGGTGAGGTCAGAG
CTCGAGGATTCCCTCGAATGCCTGTAAAACACATAGTGCTGCAGCATGAA
GAACACATCGAAGAGCACGGAAAACAGACCCAGTCCGAATTTGGTGGGAT
CACCGAAAATCGACACCCAATCATCGTAATTATGAGCATTCAGAATCATT
TGCAGCATGCTCAGCGTTCCTCCCGTGAAATCCAGCAGAATGTTGCCGAT
GCTCCAGCCGGAGGTGCTCTTCCGGCGATAGTTCATCAGAGCTTGCGGCA
CGTACTTGATGATGGTAATGGTTAGCTTGACGTAACTGCAGTAGTACAGA
AAGTCCAGCCAATGGATGACGGATCCTCCGGCCAAACCGGCAGACACGAC
GACCACCACGGCGAAGATGGCCAATATTCCGTAGGCAATGAACGACACCC
TTTGCTGTGCTCTCTGATAGAAAAAGCACTGAAGGATCGTAATGCAGGTG
GCGAACATGGCATGCAGTGAGAAGACCACGTCGTTGAGCATCACAGGATT
CACTCCCAGCGGATATCGCACCTCGTACTCGTTCTGCAGATCCTCGATGA
AATAGAGGCCGCAGTTGAACATGCTGTACAGGGTGAAGCCCACGATATTG
AGGGCCAGGAAATCAAAGTTCAGTCCCTCGACGGACTTGCGGCGATAGTT
GCTCCAGATCTGCGGATAGAAGGACACCGACCAGGCCACAAAGTAAACCC
AGCCAAAGATGATGGAGGTGTAGATCAAAGCTCTCGATTTGGCCACAGTC
ACGCGTACGAACACATCCTTCACAATCTCTTTGTTCGCATCATCGCTATC
TGCGACCACTTTGACGTTGCCG
BO15330.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-PA | 1194 | CG17119-RA | 288..1191 | 922..19 | 4520 | 100 | Minus |
CG17119-PB | 1092 | CG17119-RB | 288..1089 | 922..121 | 4010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-RC | 1455 | CG17119-RC | 436..1339 | 922..19 | 4520 | 100 | Minus |
CG17119-RA | 1495 | CG17119-RA | 476..1379 | 922..19 | 4520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23055363..23055723 | 514..874 | 1805 | 100 | Plus |
3R | 32079331 | 3R | 23054888..23055179 | 225..516 | 1460 | 100 | Plus |
3R | 32079331 | 3R | 23054526..23054631 | 19..124 | 530 | 100 | Plus |
3R | 32079331 | 3R | 23054728..23054832 | 121..225 | 525 | 100 | Plus |
3R | 32079331 | 3R | 23055789..23055836 | 875..922 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:08:31 has no hits.
BO15330.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:25 Download gff for
BO15330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-PA | 288..1194 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:38 Download gff for
BO15330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-PA | 288..1194 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:50:30 Download gff for
BO15330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 476..1386 | 12..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:38:27 Download gff for
BO15330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 476..1386 | 12..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:38:27 Download gff for
BO15330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23054519..23054628 | 12..121 | 97 | <- | Plus |
3R | 23054729..23054831 | 122..224 | 100 | <- | Plus |
3R | 23054888..23055176 | 225..513 | 100 | <- | Plus |
3R | 23055363..23055723 | 514..874 | 100 | <- | Plus |
3R | 23055789..23055836 | 875..922 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:50:30 Download gff for
BO15330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18880241..18880350 | 12..121 | 97 | <- | Plus |
arm_3R | 18880451..18880553 | 122..224 | 100 | <- | Plus |
arm_3R | 18880610..18880898 | 225..513 | 100 | <- | Plus |
arm_3R | 18881085..18881445 | 514..874 | 100 | <- | Plus |
arm_3R | 18881511..18881558 | 875..922 | 100 | | Plus |
BO15330.5prime Sequence
792 bp (790 high quality bases) assembled on 2006-06-16
> BO15330.5prime
GAAGTTATCAGTCGACATGGATTTCAGCACACACCGCCTGACCACTTTGC
TGCTCCTCCTCCTGGCCACAGTTGCCCTGGGAAATGCCCAAAGCAGTCAG
CTCACCGTCGATTCCCATGACATCACCGTTCTGCTGAACAGCAACGAGAC
TTTTCTGGTGTTCGCCAACGGATTGCTAGACAGCGACGTGGAAGTTGCGC
TGGGAACAGATTCGGAGGATCATTTGCTCCTCGATCCCGCAACGTTTGTG
TATCCAGCGGGCAGTACTCGAAATCAGTCGGTGGTGATAACTGGCCTCAA
AGCCGGCAACGTCAAAGTGGTCGCAGATAGCGATGATGCGAACAAAGAGA
TTGTGAAGGATGTGTTCGTACGCGTGACTGTGGCCAAATCGAGAGCTTTG
ATCTACACCTCCATCATCTTTGGCTGGGTTTACTTTGTGGCCTGGTCGGT
GTCCTTCTATCCGCAGATCTGGAGCAACTATCGCCGCAAGTCCGTCGAGG
GACTGAACTTTGATTTCCTGGCCCTCAATATCGTGGGCTTCACCCTGTAC
AGCATGTTCAACTGCGGCCTCTATTTCATCGAGGATCTGCAGAACGAGTA
CGAGGTGCGATATCCGCTGGGAGTGAATCCTGTGATGCTCAACGACGTGG
TCTTCTCACTGCATGCCATGTTCGCCACCTGCATTACGATCCTTCAGTGC
TTTTTCTATCAGAGAGCACAGCAAAGGGTGTCGTTCATTGCCTACGGAAT
ATTGGCCATCTTCGCCGTGGTGGTCGTCGTGTCTGCCGGTTT
BO15330.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-PA | 1194 | CG17119-RA | 1..776 | 17..792 | 3880 | 100 | Plus |
CG17119-PB | 1092 | CG17119-RB | 1..776 | 17..792 | 3880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-RC | 1455 | CG17119-RC | 149..924 | 17..792 | 3880 | 100 | Plus |
CG17119-RA | 1495 | CG17119-RA | 189..964 | 17..792 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23055363..23055723 | 712..352 | 1805 | 100 | Minus |
3R | 32079331 | 3R | 23055789..23055971 | 351..169 | 915 | 100 | Minus |
3R | 32079331 | 3R | 23056042..23056151 | 168..59 | 535 | 99.1 | Minus |
3R | 32079331 | 3R | 23055097..23055179 | 792..710 | 415 | 100 | Minus |
3R | 32079331 | 3R | 23056199..23056253 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:45:00 has no hits.
BO15330.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:26 Download gff for
BO15330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-PB | 1..776 | 17..792 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:39 Download gff for
BO15330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-PB | 1..776 | 17..792 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:53 Download gff for
BO15330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 183..964 | 10..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:51 Download gff for
BO15330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 183..964 | 10..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:51 Download gff for
BO15330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23055097..23055176 | 713..792 | 100 | <- | Minus |
3R | 23055363..23055723 | 352..712 | 100 | <- | Minus |
3R | 23055789..23055971 | 169..351 | 100 | <- | Minus |
3R | 23056042..23056138 | 72..168 | 100 | <- | Minus |
3R | 23056199..23056259 | 10..71 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:53 Download gff for
BO15330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18880819..18880898 | 713..792 | 100 | <- | Minus |
arm_3R | 18881085..18881445 | 352..712 | 100 | <- | Minus |
arm_3R | 18881511..18881693 | 169..351 | 100 | <- | Minus |
arm_3R | 18881764..18881860 | 72..168 | 100 | <- | Minus |
arm_3R | 18881921..18881981 | 10..71 | 95 | | Minus |
BO15330.complete Sequence
1225 bp assembled on 2007-10-17
GenBank Submission: FJ633412
> BO15330.complete
GAAGTTATCAGTCGACATGGATTTCAGCACACACCGCCTGACCACTTTGC
TGCTCCTCCTCCTGGCCACAGTTGCCCTGGGAAATGCCCAAAGCAGTCAG
CTCACCGTCGATTCCCATGACATCACCGTTCTGCTGAACAGCAACGAGAC
TTTTCTGGTGTTCGCCAACGGATTGCTAGACAGCGACGTGGAAGTTGCGC
TGGGAACAGATTCGGAGGATCATTTGCTCCTCGATCCCGCAACGTTTGTG
TATCCAGCGGGCAGTACTCGAAATCAGTCGGTGGTGATAACTGGCCTCAA
AGCCGGCAACGTCAAAGTGGTCGCAGATAGCGATGATGCGAACAAAGAGA
TTGTGAAGGATGTGTTCGTACGCGTGACTGTGGCCAAATCGAGAGCTTTG
ATCTACACCTCCATCATCTTTGGCTGGGTTTACTTTGTGGCCTGGTCGGT
GTCCTTCTATCCGCAGATCTGGAGCAACTATCGCCGCAAGTCCGTCGAGG
GACTGAACTTTGATTTCCTGGCCCTCAATATCGTGGGCTTCACCCTGTAC
AGCATGTTCAACTGCGGCCTCTATTTCATCGAGGATCTGCAGAACGAGTA
CGAGGTGCGATATCCGCTGGGAGTGAATCCTGTGATGCTCAACGACGTGG
TCTTCTCACTGCATGCCATGTTCGCCACCTGCATTACGATCCTTCAGTGC
TTTTTCTATCAGAGAGCACAGCAAAGGGTGTCGTTCATTGCCTACGGAAT
ATTGGCCATCTTCGCCGTGGTGGTCGTCGTGTCTGCCGGTTTGGCCGGAG
GATCCGTCATCCATTGGCTGGACTTTCTGTACTACTGCAGTTACGTCAAG
CTAACCATTACCATCATCAAGTACGTGCCGCAAGCTCTGATGAACTATCG
CCGGAAGAGCACCTCCGGCTGGAGCATCGGCAACATTCTGCTGGATTTCA
CGGGAGGAACGCTGAGCATGCTGCAAATGATTCTGAATGCTCATAATTAC
GATGATTGGGTGTCGATTTTCGGTGATCCCACCAAATTCGGACTGGGTCT
GTTTTCCGTGCTCTTCGATGTGTTCTTCATGCTGCAGCACTATGTGTTTT
ACAGGCATTCGAGGGAATCCTCGAGCTCTGACCTCACCACCGTGACCGAT
GTTCAAAATCGAACAAATGAGTCGCCGCCGCCGAGCGAAGTGACGACTGA
GAAATATGCAAGCTTTCTAGACCAT
BO15330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-RC | 1194 | CG17119-PC | 1..1191 | 17..1207 | 5955 | 100 | Plus |
CG17119-RA | 1194 | CG17119-PA | 1..1191 | 17..1207 | 5955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-RC | 1455 | CG17119-RC | 149..1339 | 17..1207 | 5955 | 100 | Plus |
CG17119-RA | 1495 | CG17119-RA | 189..1379 | 17..1207 | 5955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23055363..23055723 | 712..352 | 1805 | 100 | Minus |
3R | 32079331 | 3R | 23054888..23055179 | 1001..710 | 1460 | 100 | Minus |
3R | 32079331 | 3R | 23055789..23055971 | 351..169 | 915 | 100 | Minus |
3R | 32079331 | 3R | 23056042..23056151 | 168..59 | 535 | 99.1 | Minus |
3R | 32079331 | 3R | 23054526..23054631 | 1207..1102 | 530 | 100 | Minus |
3R | 32079331 | 3R | 23054728..23054832 | 1105..1001 | 525 | 100 | Minus |
3R | 32079331 | 3R | 23056199..23056253 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:52:16 has no hits.
BO15330.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:47 Download gff for
BO15330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 1..1194 | 17..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:12 Download gff for
BO15330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 182..1385 | 10..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:08 Download gff for
BO15330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 189..1379 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:43 Download gff for
BO15330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 188..1378 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:42 Download gff for
BO15330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17119-RA | 189..1379 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:42 Download gff for
BO15330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23054524..23054628 | 1105..1209 | 98 | <- | Minus |
3R | 23054729..23054831 | 1002..1104 | 100 | <- | Minus |
3R | 23054888..23055176 | 713..1001 | 100 | <- | Minus |
3R | 23055363..23055723 | 352..712 | 100 | <- | Minus |
3R | 23055789..23055971 | 169..351 | 100 | <- | Minus |
3R | 23056042..23056138 | 72..168 | 100 | <- | Minus |
3R | 23056199..23056253 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:08 Download gff for
BO15330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18880246..18880350 | 1105..1209 | 98 | <- | Minus |
arm_3R | 18880451..18880553 | 1002..1104 | 100 | <- | Minus |
arm_3R | 18880610..18880898 | 713..1001 | 100 | <- | Minus |
arm_3R | 18881085..18881445 | 352..712 | 100 | <- | Minus |
arm_3R | 18881511..18881693 | 169..351 | 100 | <- | Minus |
arm_3R | 18881764..18881860 | 72..168 | 100 | <- | Minus |
arm_3R | 18881921..18881975 | 17..71 | 100 | | Minus |
BO15330.pep Sequence
Translation from 16 to 1225
> BO15330.pep
MDFSTHRLTTLLLLLLATVALGNAQSSQLTVDSHDITVLLNSNETFLVFA
NGLLDSDVEVALGTDSEDHLLLDPATFVYPAGSTRNQSVVITGLKAGNVK
VVADSDDANKEIVKDVFVRVTVAKSRALIYTSIIFGWVYFVAWSVSFYPQ
IWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQNEYEVRYP
LGVNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAIFA
VVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTS
GWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLF
DVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPPSEVTTEKYASF
LDH
BO15330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17119-PC | 397 | CG17119-PC | 1..397 | 1..397 | 2044 | 100 | Plus |
CG17119-PA | 397 | CG17119-PA | 1..397 | 1..397 | 2044 | 100 | Plus |