Clone BO15330 Report

Search the DGRC for BO15330

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG17119-RA
Protein status:BO15330.pep: validated full length
Sequenced Size:1225

Clone Sequence Records

BO15330.3prime Sequence

922 bp (768 high quality bases) assembled on 2006-06-16

> BO15330.3prime
ATGGTCTAGAAAGCTTGCATATTTCTCAGTCGTCACTTCGCTCGGCGGCG
GCGACTCATTTGTTCGATTTTGAACATCGGTCACGGTGGTGAGGTCAGAG
CTCGAGGATTCCCTCGAATGCCTGTAAAACACATAGTGCTGCAGCATGAA
GAACACATCGAAGAGCACGGAAAACAGACCCAGTCCGAATTTGGTGGGAT
CACCGAAAATCGACACCCAATCATCGTAATTATGAGCATTCAGAATCATT
TGCAGCATGCTCAGCGTTCCTCCCGTGAAATCCAGCAGAATGTTGCCGAT
GCTCCAGCCGGAGGTGCTCTTCCGGCGATAGTTCATCAGAGCTTGCGGCA
CGTACTTGATGATGGTAATGGTTAGCTTGACGTAACTGCAGTAGTACAGA
AAGTCCAGCCAATGGATGACGGATCCTCCGGCCAAACCGGCAGACACGAC
GACCACCACGGCGAAGATGGCCAATATTCCGTAGGCAATGAACGACACCC
TTTGCTGTGCTCTCTGATAGAAAAAGCACTGAAGGATCGTAATGCAGGTG
GCGAACATGGCATGCAGTGAGAAGACCACGTCGTTGAGCATCACAGGATT
CACTCCCAGCGGATATCGCACCTCGTACTCGTTCTGCAGATCCTCGATGA
AATAGAGGCCGCAGTTGAACATGCTGTACAGGGTGAAGCCCACGATATTG
AGGGCCAGGAAATCAAAGTTCAGTCCCTCGACGGACTTGCGGCGATAGTT
GCTCCAGATCTGCGGATAGAAGGACACCGACCAGGCCACAAAGTAAACCC
AGCCAAAGATGATGGAGGTGTAGATCAAAGCTCTCGATTTGGCCACAGTC
ACGCGTACGAACACATCCTTCACAATCTCTTTGTTCGCATCATCGCTATC
TGCGACCACTTTGACGTTGCCG

BO15330.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-PA 1194 CG17119-RA 288..1191 922..19 4520 100 Minus
CG17119-PB 1092 CG17119-RB 288..1089 922..121 4010 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-RC 1455 CG17119-RC 436..1339 922..19 4520 100 Minus
CG17119-RA 1495 CG17119-RA 476..1379 922..19 4520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23055363..23055723 514..874 1805 100 Plus
3R 32079331 3R 23054888..23055179 225..516 1460 100 Plus
3R 32079331 3R 23054526..23054631 19..124 530 100 Plus
3R 32079331 3R 23054728..23054832 121..225 525 100 Plus
3R 32079331 3R 23055789..23055836 875..922 240 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:08:31 has no hits.

BO15330.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:25 Download gff for BO15330.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-PA 288..1194 18..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:38 Download gff for BO15330.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-PA 288..1194 18..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:50:30 Download gff for BO15330.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 476..1386 12..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:38:27 Download gff for BO15330.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 476..1386 12..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:38:27 Download gff for BO15330.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23054519..23054628 12..121 97 <- Plus
3R 23054729..23054831 122..224 100 <- Plus
3R 23054888..23055176 225..513 100 <- Plus
3R 23055363..23055723 514..874 100 <- Plus
3R 23055789..23055836 875..922 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:50:30 Download gff for BO15330.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18880241..18880350 12..121 97 <- Plus
arm_3R 18880451..18880553 122..224 100 <- Plus
arm_3R 18880610..18880898 225..513 100 <- Plus
arm_3R 18881085..18881445 514..874 100 <- Plus
arm_3R 18881511..18881558 875..922 100   Plus

BO15330.5prime Sequence

792 bp (790 high quality bases) assembled on 2006-06-16

> BO15330.5prime
GAAGTTATCAGTCGACATGGATTTCAGCACACACCGCCTGACCACTTTGC
TGCTCCTCCTCCTGGCCACAGTTGCCCTGGGAAATGCCCAAAGCAGTCAG
CTCACCGTCGATTCCCATGACATCACCGTTCTGCTGAACAGCAACGAGAC
TTTTCTGGTGTTCGCCAACGGATTGCTAGACAGCGACGTGGAAGTTGCGC
TGGGAACAGATTCGGAGGATCATTTGCTCCTCGATCCCGCAACGTTTGTG
TATCCAGCGGGCAGTACTCGAAATCAGTCGGTGGTGATAACTGGCCTCAA
AGCCGGCAACGTCAAAGTGGTCGCAGATAGCGATGATGCGAACAAAGAGA
TTGTGAAGGATGTGTTCGTACGCGTGACTGTGGCCAAATCGAGAGCTTTG
ATCTACACCTCCATCATCTTTGGCTGGGTTTACTTTGTGGCCTGGTCGGT
GTCCTTCTATCCGCAGATCTGGAGCAACTATCGCCGCAAGTCCGTCGAGG
GACTGAACTTTGATTTCCTGGCCCTCAATATCGTGGGCTTCACCCTGTAC
AGCATGTTCAACTGCGGCCTCTATTTCATCGAGGATCTGCAGAACGAGTA
CGAGGTGCGATATCCGCTGGGAGTGAATCCTGTGATGCTCAACGACGTGG
TCTTCTCACTGCATGCCATGTTCGCCACCTGCATTACGATCCTTCAGTGC
TTTTTCTATCAGAGAGCACAGCAAAGGGTGTCGTTCATTGCCTACGGAAT
ATTGGCCATCTTCGCCGTGGTGGTCGTCGTGTCTGCCGGTTT

BO15330.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-PA 1194 CG17119-RA 1..776 17..792 3880 100 Plus
CG17119-PB 1092 CG17119-RB 1..776 17..792 3880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-RC 1455 CG17119-RC 149..924 17..792 3880 100 Plus
CG17119-RA 1495 CG17119-RA 189..964 17..792 3880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23055363..23055723 712..352 1805 100 Minus
3R 32079331 3R 23055789..23055971 351..169 915 100 Minus
3R 32079331 3R 23056042..23056151 168..59 535 99.1 Minus
3R 32079331 3R 23055097..23055179 792..710 415 100 Minus
3R 32079331 3R 23056199..23056253 71..17 275 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:45:00 has no hits.

BO15330.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:26 Download gff for BO15330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-PB 1..776 17..792 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:39 Download gff for BO15330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-PB 1..776 17..792 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:53 Download gff for BO15330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 183..964 10..792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:51 Download gff for BO15330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 183..964 10..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:51 Download gff for BO15330.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23055097..23055176 713..792 100 <- Minus
3R 23055363..23055723 352..712 100 <- Minus
3R 23055789..23055971 169..351 100 <- Minus
3R 23056042..23056138 72..168 100 <- Minus
3R 23056199..23056259 10..71 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:53 Download gff for BO15330.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18880819..18880898 713..792 100 <- Minus
arm_3R 18881085..18881445 352..712 100 <- Minus
arm_3R 18881511..18881693 169..351 100 <- Minus
arm_3R 18881764..18881860 72..168 100 <- Minus
arm_3R 18881921..18881981 10..71 95   Minus

BO15330.complete Sequence

1225 bp assembled on 2007-10-17

GenBank Submission: FJ633412

> BO15330.complete
GAAGTTATCAGTCGACATGGATTTCAGCACACACCGCCTGACCACTTTGC
TGCTCCTCCTCCTGGCCACAGTTGCCCTGGGAAATGCCCAAAGCAGTCAG
CTCACCGTCGATTCCCATGACATCACCGTTCTGCTGAACAGCAACGAGAC
TTTTCTGGTGTTCGCCAACGGATTGCTAGACAGCGACGTGGAAGTTGCGC
TGGGAACAGATTCGGAGGATCATTTGCTCCTCGATCCCGCAACGTTTGTG
TATCCAGCGGGCAGTACTCGAAATCAGTCGGTGGTGATAACTGGCCTCAA
AGCCGGCAACGTCAAAGTGGTCGCAGATAGCGATGATGCGAACAAAGAGA
TTGTGAAGGATGTGTTCGTACGCGTGACTGTGGCCAAATCGAGAGCTTTG
ATCTACACCTCCATCATCTTTGGCTGGGTTTACTTTGTGGCCTGGTCGGT
GTCCTTCTATCCGCAGATCTGGAGCAACTATCGCCGCAAGTCCGTCGAGG
GACTGAACTTTGATTTCCTGGCCCTCAATATCGTGGGCTTCACCCTGTAC
AGCATGTTCAACTGCGGCCTCTATTTCATCGAGGATCTGCAGAACGAGTA
CGAGGTGCGATATCCGCTGGGAGTGAATCCTGTGATGCTCAACGACGTGG
TCTTCTCACTGCATGCCATGTTCGCCACCTGCATTACGATCCTTCAGTGC
TTTTTCTATCAGAGAGCACAGCAAAGGGTGTCGTTCATTGCCTACGGAAT
ATTGGCCATCTTCGCCGTGGTGGTCGTCGTGTCTGCCGGTTTGGCCGGAG
GATCCGTCATCCATTGGCTGGACTTTCTGTACTACTGCAGTTACGTCAAG
CTAACCATTACCATCATCAAGTACGTGCCGCAAGCTCTGATGAACTATCG
CCGGAAGAGCACCTCCGGCTGGAGCATCGGCAACATTCTGCTGGATTTCA
CGGGAGGAACGCTGAGCATGCTGCAAATGATTCTGAATGCTCATAATTAC
GATGATTGGGTGTCGATTTTCGGTGATCCCACCAAATTCGGACTGGGTCT
GTTTTCCGTGCTCTTCGATGTGTTCTTCATGCTGCAGCACTATGTGTTTT
ACAGGCATTCGAGGGAATCCTCGAGCTCTGACCTCACCACCGTGACCGAT
GTTCAAAATCGAACAAATGAGTCGCCGCCGCCGAGCGAAGTGACGACTGA
GAAATATGCAAGCTTTCTAGACCAT

BO15330.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-RC 1194 CG17119-PC 1..1191 17..1207 5955 100 Plus
CG17119-RA 1194 CG17119-PA 1..1191 17..1207 5955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-RC 1455 CG17119-RC 149..1339 17..1207 5955 100 Plus
CG17119-RA 1495 CG17119-RA 189..1379 17..1207 5955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23055363..23055723 712..352 1805 100 Minus
3R 32079331 3R 23054888..23055179 1001..710 1460 100 Minus
3R 32079331 3R 23055789..23055971 351..169 915 100 Minus
3R 32079331 3R 23056042..23056151 168..59 535 99.1 Minus
3R 32079331 3R 23054526..23054631 1207..1102 530 100 Minus
3R 32079331 3R 23054728..23054832 1105..1001 525 100 Minus
3R 32079331 3R 23056199..23056253 71..17 275 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:52:16 has no hits.

BO15330.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:47 Download gff for BO15330.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 1..1194 17..1208 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:12 Download gff for BO15330.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 182..1385 10..1214 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:08 Download gff for BO15330.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 189..1379 17..1209 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:43 Download gff for BO15330.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 188..1378 17..1209 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:42 Download gff for BO15330.complete
Subject Subject Range Query Range Percent Splice Strand
CG17119-RA 189..1379 17..1209 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:42 Download gff for BO15330.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23054524..23054628 1105..1209 98 <- Minus
3R 23054729..23054831 1002..1104 100 <- Minus
3R 23054888..23055176 713..1001 100 <- Minus
3R 23055363..23055723 352..712 100 <- Minus
3R 23055789..23055971 169..351 100 <- Minus
3R 23056042..23056138 72..168 100 <- Minus
3R 23056199..23056253 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:08 Download gff for BO15330.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18880246..18880350 1105..1209 98 <- Minus
arm_3R 18880451..18880553 1002..1104 100 <- Minus
arm_3R 18880610..18880898 713..1001 100 <- Minus
arm_3R 18881085..18881445 352..712 100 <- Minus
arm_3R 18881511..18881693 169..351 100 <- Minus
arm_3R 18881764..18881860 72..168 100 <- Minus
arm_3R 18881921..18881975 17..71 100   Minus

BO15330.pep Sequence

Translation from 16 to 1225

> BO15330.pep
MDFSTHRLTTLLLLLLATVALGNAQSSQLTVDSHDITVLLNSNETFLVFA
NGLLDSDVEVALGTDSEDHLLLDPATFVYPAGSTRNQSVVITGLKAGNVK
VVADSDDANKEIVKDVFVRVTVAKSRALIYTSIIFGWVYFVAWSVSFYPQ
IWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQNEYEVRYP
LGVNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAIFA
VVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTS
GWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLF
DVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPPSEVTTEKYASF
LDH

BO15330.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17119-PC 397 CG17119-PC 1..397 1..397 2044 100 Plus
CG17119-PA 397 CG17119-PA 1..397 1..397 2044 100 Plus