Clone Sequence Records
BO15331.3prime Sequence
551 bp (550 high quality bases) assembled on 2006-06-16
> BO15331.3prime
ATGGTCTAGAAAGCTTGCGTAGCGGCCCCTACGATTTGTCCCCGCCCCCC
TGGGCGTGGTCGTCGTGATGGAGGGGTTACCATGGGCATCCAGACGGGAT
TGAAACTGAGATTGGAACTGGGAACTGGAGACGCCATCAGATGCCGCGGA
TGCCGCAGATGCCTCGCTGACCATGGGCACCTCGATGGAACGCGGCAGAT
TGGGATATTCCTGCGGCGTGATCGACTGATTCTGTCGATAGCCAAACTGA
TCGGCATTGTAGAAGACGGTGATGTAACGCCCGTCGGTCATCCGATAGGC
ATAGTAGCCCACAACCATCAGGGTCTTTACATCGTTGATCTTAACGAAAT
ATCCACGTTCATAGCGAGCGGTTCCATCGTCCAACTCGAATCGATACTCG
TAGCTGCCGTCGGGATATCGGTTATCGAATCGATCTAGTAATCGCGCACT
GGGCGCCGACTCTTTGATCTGCTGGGCGGAAATGAGGGTGGCGCTCAGCA
GGAAGATGGCGAACAGGATCGAACCGGAAGTGGCCATGTCGACTGATAAC
T
BO15331.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15757-PA | 522 | CG15757-RA | 1..519 | 537..19 | 2595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr12A-RA | 858 | CG15757-RA | 132..650 | 537..19 | 2595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13543774..13544086 | 537..225 | 1565 | 100 | Minus |
| X | 23542271 | X | 13544494..13544699 | 224..19 | 1030 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:10:00 has no hits.
BO15331.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:27 Download gff for
BO15331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15757-PA | 1..522 | 16..537 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:41 Download gff for
BO15331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15757-PA | 1..522 | 16..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:50:55 Download gff for
BO15331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr12A-RA | 125..658 | 11..544 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:45:39 Download gff for
BO15331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr12A-RA | 125..658 | 11..544 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:45:39 Download gff for
BO15331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13544494..13544707 | 11..224 | 98 | | Minus |
| X | 13543767..13544086 | 225..544 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:50:55 Download gff for
BO15331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13437800..13438119 | 225..544 | 99 | -> | Minus |
| arm_X | 13438527..13438740 | 11..224 | 98 | | Minus |
BO15331.5prime Sequence
551 bp (550 high quality bases) assembled on 2006-06-16
> BO15331.5prime
GAAGTTATCAGTCGACATGGCCACTTCCGGTTCGATCCTGTTCGCCATCT
TCCTGCTGAGCGCCACCCTCATTTCCGCCCAGCAGATCAAAGAGTCGGCG
CCCAGTGCGCGATTACTAGATCGATTCGATAACCGATATCCCGACGGCAG
CTACGAGTATCGATTCGAGTTGGACGATGGAACCGCTCGCTATGAACGTG
GATATTTCGTTAAGATCAACGATGTAAAGACCCTGATGGTTGTGGGCTAC
TATGCCTATCGGATGACCGACGGGCGTTACATCACCGTCTTCTACAATGC
CGATCAGTTTGGCTATCGACAGAATCAGTCGATCACGCCGCAGGAATATC
CCAATCTGCCGCGTTCCATCGAGGTGCCCATGGTCAGCGAGGCATCTGCG
GCATCCGCGGCATCTGATGGCGTCTCCAGTTCCCAGTTCCAATCTCAGTT
TCAATCCCGTCTGGATGCCCATGGTAACCCCTCCATCACGACGACCACGC
CCAGGGGGGCGGGGACAAATCGTAGGGGCCGCTACGCAAGCTTTCTAGAC
C
BO15331.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15757-PA | 522 | CG15757-RA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr12A-RA | 858 | CG15757-RA | 132..650 | 17..535 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13543774..13544086 | 17..329 | 1565 | 100 | Plus |
| X | 23542271 | X | 13544494..13544699 | 330..535 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:36:29 has no hits.
BO15331.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:27 Download gff for
BO15331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15757-PA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:43 Download gff for
BO15331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15757-PA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:02:02 Download gff for
BO15331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr12A-RA | 125..658 | 10..543 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:33 Download gff for
BO15331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr12A-RA | 125..658 | 10..543 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:33 Download gff for
BO15331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13543767..13544086 | 10..329 | 99 | -> | Plus |
| X | 13544494..13544707 | 330..543 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:02:02 Download gff for
BO15331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13437800..13438119 | 10..329 | 99 | -> | Plus |
| arm_X | 13438527..13438740 | 330..543 | 98 | | Plus |
BO15331.complete Sequence
553 bp (553 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633413
> BO15331.complete
GAAGTTATCAGTCGACATGGCCACTTCCGGTTCGATCCTGTTCGCCATCT
TCCTGCTGAGCGCCACCCTCATTTCCGCCCAGCAGATCAAAGAGTCGGCG
CCCAGTGCGCGATTACTAGATCGATTCGATAACCGATATCCCGACGGCAG
CTACGAGTATCGATTCGAGTTGGACGATGGAACCGCTCGCTATGAACGTG
GATATTTCGTTAAGATCAACGATGTAAAGACCCTGATGGTTGTGGGCTAC
TATGCCTATCGGATGACCGACGGGCGTTACATCACCGTCTTCTACAATGC
CGATCAGTTTGGCTATCGACAGAATCAGTCGATCACGCCGCAGGAATATC
CCAATCTGCCGCGTTCCATCGAGGTGCCCATGGTCAGCGAGGCATCTGCG
GCATCCGCGGCATCTGATGGCGTCTCCAGTTCCCAGTTCCAATCTCAGTT
TCAATCCCGTCTGGATGCCCATGGTAACCCCTCCATCACGACGACCACGC
CCAGGGGGGCGGGGACAAATCGTAGGGGCCGCTACGCAAGCTTTCTAGAC
CAT
BO15331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr12A-RA | 522 | CG15757-PA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr12A-RA | 858 | CG15757-RA | 132..650 | 17..535 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13543774..13544086 | 17..329 | 1565 | 100 | Plus |
| X | 23542271 | X | 13544494..13544699 | 330..535 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:53:55 has no hits.
BO15331.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:01 Download gff for
BO15331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr12A-RA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:34 Download gff for
BO15331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr12A-RA | 125..658 | 10..543 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:04 Download gff for
BO15331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr12A-RA | 132..650 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:02 Download gff for
BO15331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr12A-RA | 125..658 | 10..543 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:38 Download gff for
BO15331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr12A-RA | 132..650 | 17..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:38 Download gff for
BO15331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13543774..13544086 | 17..329 | 100 | -> | Plus |
| X | 13544494..13544699 | 330..537 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:04 Download gff for
BO15331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13437807..13438119 | 17..329 | 100 | -> | Plus |
| arm_X | 13438527..13438732 | 330..537 | 99 | | Plus |
BO15331.pep Sequence
Translation from 16 to 553
> BO15331.pep
MATSGSILFAIFLLSATLISAQQIKESAPSARLLDRFDNRYPDGSYEYRF
ELDDGTARYERGYFVKINDVKTLMVVGYYAYRMTDGRYITVFYNADQFGY
RQNQSITPQEYPNLPRSIEVPMVSEASAASAASDGVSSSQFQSQFQSRLD
AHGNPSITTTTPRGAGTNRRGRYASFLDH
BO15331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr12A-PA | 173 | CG15757-PA | 1..173 | 1..173 | 886 | 100 | Plus |
| CG15756-PA | 298 | CG15756-PA | 80..185 | 18..123 | 223 | 41.5 | Plus |
