Clone BO15333 Report

Search the DGRC for BO15333

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG9904-RA
Protein status:BO15333.pep: validated full length
Sequenced Size:1144

Clone Sequence Records

BO15333.3prime Sequence

878 bp (844 high quality bases) assembled on 2006-06-16

> BO15333.3prime
ATGGTCTAGAAAGCTTGCATGGTCCGCGGTGGTCTTCTTTGTGGGACGCT
TACGCAGCGCATCGGGCGATTCGCGCTTGCCACTGCGGGATTTCTTGACC
AGCACCAAGTCATCGGCATCGACGTCGCTCAGCGTGTCGCCGCCCACGTC
CGCAATATCGGACTTATCACTGTAGGCAACCAGGTCGTCGTCGTCGTCGC
GCAGGCTGCTCGCTTTGGAGTGTATTACGCCGGGCTCGAGCGACTTCGTG
AGCCGGGCGTACTTGATTTGCACGCTATGCAGCCACTTGGCGTCGGACCA
GTGGTACCAGCTGAGCAGAAAGACGACCAGTATAAAGAACAGATTGGTGC
TAATGGCCACTATGGCCGACAGTACGGGCCAGTTGAACATGATGTACCGC
AGACCGGTAAAATCGGCAACTATGTGCAGGGTGACCGTGTAGAACTGGAT
CTTCTGCGACTGTATCTCCACGTAGACATCCGTTATGGGATGTTGTCGCT
CCTCCAGATACCGTGAGAATATCTCAACTGGCACCTGCTGGAACTCCTCT
TTCCAGCCAAGCACATAGAGCGGACTCAGGACCCACGTGGAGATCATGCG
GATCAGCGGCGAACGATAGCGCATCATGGCAGACCGACAGGAGTGACCCC
TCAGCATCGAGTCGTAGTCCCTCATCTCGGCGCACACCATGAACATGCCC
AGCTCGAGATTTTGCGGCGACTCCGGCATGTCGATGTTCACGATCACCTT
GTACGCCTGGCCAACCATCAGGAGTTGCTGCTTCTTCGTCAGCGAGACGT
GCGCGTGCGGAAAGGTGCAGGGCGTGCTGGTCTCCAGGCAGGTTTTGAAC
TGCATGTGAACGGGTCGGGTGTGCGATA

BO15333.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9904-PA 1113 CG9904-RA 251..1110 878..19 4200 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Seipin-RA 2045 CG9904-RA 762..1621 878..19 4240 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2620825..2621312 844..357 2395 99.4 Minus
X 23542271 X 2621378..2621716 357..19 1680 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 15:40:29 has no hits.

BO15333.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:28 Download gff for BO15333.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9904-PA 252..1113 16..877 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:44 Download gff for BO15333.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9904-PA 252..1113 16..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:34:53 Download gff for BO15333.3prime
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 763..1625 15..877 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:50 Download gff for BO15333.3prime
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 763..1625 15..877 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:50 Download gff for BO15333.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2620561..2620593 845..877 100 -> Minus
X 2620825..2621312 357..844 99 -> Minus
X 2621379..2621720 15..356 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:34:53 Download gff for BO15333.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2514594..2514626 845..877 100 -> Minus
arm_X 2514858..2515345 357..844 99 -> Minus
arm_X 2515412..2515753 15..356 99   Minus

BO15333.5prime Sequence

853 bp (758 high quality bases) assembled on 2006-06-16

> BO15333.5prime
GAAGTTATCAGTCGACATGAACATCCTGCTGCGCTTAATCGTCTTCGCCC
TGGATCCTCTGGGTCTGGGCCGACGTTTCCTCATCCGGCCTGCCGTGAAT
CTGGGCTGGAACGTCTACGATCGCGTGCGCAGCAAGGCGGACGAGAAGGT
GGGCACGGTGCGAGAGCTGGTCCTCCGGCTGGGCCTCATCGCCTTCGCCG
TGGTGCTCATCATCTGGCTGGCGGTCTTCATGTACGCCGCCTTCTACTAC
GTCTACATGCCGGCCATATCGCACACCCGACCCGTTCACATGCAGTTCAA
AACCTGCCTGGAGACCAGCACGCCCTGCACCTTTCCGCACGCGCACGTCT
CGCTGACGAAGAAGCAGCAACTCCTGATGGTTGGCCAGGCGTACAAGGTG
ATCGTGAACATCGACATGCCGGAGTCGCCGCAAAATCTCGAGCTGGGCAT
GTTCATGGTGTGCGCCGAGATGAGGGACTACGACTCGATGCTGAGGGGTC
ACTCCTGTCGGTCTGCCATGATGCGCTATCGTTCGCCGCTGATCCGCATG
ATCTCCACGTGGGTCCTGAGTCCGCTCTATGTGCTTGGCTGGAAAGAGGA
GTTCCAGCAGGTGCCAGTTGAGATATTCTCACGGTATCTGGAGGAGCGAC
AACATCCCATAACGGATGTCTACGTGGAGATACAGTCGCAGAAGATCCAG
TTCTACACGGTCACCCTGCACATAGTTGCCGATTTTACCGGTCTGCGGTA
CATCATGTTCAACTGGCCCGTACTGTCGGCCATAGTGGCCATTAGCACCA
ATCTGTTCTTTATACTGGTCGTCTTTCTGCTCAGCTGGTACCACTGGTCC
GAC

BO15333.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9904-PA 1113 CG9904-RA 1..837 17..853 4035 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Seipin-RA 2045 CG9904-RA 511..1348 16..853 4100 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2620825..2621312 301..788 2395 99.4 Plus
X 23542271 X 2620309..2620593 16..300 1380 98.9 Plus
X 23542271 X 2621378..2621443 788..853 330 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:31:04 has no hits.

BO15333.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:29 Download gff for BO15333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9904-PA 1..837 17..853 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:45 Download gff for BO15333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9904-PA 1..837 17..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:10:20 Download gff for BO15333.5prime
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 511..1348 16..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:39 Download gff for BO15333.5prime
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 511..1348 16..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:39 Download gff for BO15333.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2620309..2620593 16..300 98 -> Plus
X 2620825..2621312 301..788 99 -> Plus
X 2621379..2621443 789..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:10:20 Download gff for BO15333.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2514342..2514626 16..300 98 -> Plus
arm_X 2514858..2515345 301..788 99 -> Plus
arm_X 2515412..2515476 789..853 100   Plus

BO15333.complete Sequence

1144 bp (1144 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633414

> BO15333.complete
GAAGTTATCAGTCGACATGAACATCCTGCTGCGCTTAATCGTCTTCGCCC
TGGATCCTCTGGGTCTGGGCCGACGTTTCCTCATCCGGCCTGCCGTGAAT
CTGGGCTGGAACGTCTACGATCGCGTGCGCAGCAAGGCGGACGAGAAGGT
GGGCACGGTGCGAGAGCTGGTCCTCCGGCTGGGCCTCATCGCCTTCGCCG
TGGTGCTCATCATCTGGCTGGCGGTCTTCATGTACGCCGCCTTCTACTAC
GTCTACATGCCGGCCATATCGCACACCCGACCCGTTCACATGCAGTTCAA
AACCTGCCTGGAGACCAGCACGCCCTGCACCTTTCCGCACGCGCACGTCT
CGCTGACGAAGAAGCAGCAACTCCTGATGGTTGGCCAGGCGTACAAGGTG
ATCGTGAACATCGACATGCCGGAGTCGCCGCAAAATCTCGAGCTGGGCAT
GTTCATGGTGTGCGCCGAGATGAGGGACTACGACTCGATGCTGAGGGGTC
ACTCCTGTCGGTCTGCCATGATGCGCTATCGTTCGCCGCTGATCCGCATG
ATCTCCACGTGGGTCCTGAGTCCGCTCTATGTGCTTGGCTGGAAAGAGGA
GTTCCAGCAGGTGCCAGTTGAGATATTCTCACGGTATCTGGAGGAGCGAC
AACATCCCATAACGGATGTCTACGTGGAGATACAGTCGCAGAAGATCCAG
TTCTACACGGTCACCCTGCACATAGTTGCCGATTTTACCGGTCTGCGGTA
CATCATGTTCAACTGGCCCGTACTGTCGGCCATAGTGGCCATTAGCACCA
ATCTGTTCTTTATACTGGTCGTCTTTCTGCTCAGCTGGTACCACTGGTCC
GACGCCAAGTGGCTGCATAGCGTGCAAATCAAGTACGCCCGGCTCACGAA
GTCGCTCGAGCCCGGCGTAATACACTCCAAAGCGAGCAGCCTGCGCGACG
ACGACGACGACCTGGTTGCCTACAGTGATAAGTCCGATATTGCGGACGTG
GGCGGCGACACGCTGAGCGACGTCGATGCCGATGACTTGGTGCTGGTCAA
GAAATCCCGCAGTGGCAAGCGCGAATCGCCCGATGCGCTGCGTAAGCGTC
CCACAAAGAAGACCACCGCGGACCATGCAAGCTTTCTAGACCAT

BO15333.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Seipin-RA 1113 CG9904-PA 1..1110 17..1126 5445 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Seipin-RA 2045 CG9904-RA 511..1621 16..1126 5450 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2620825..2621312 301..788 2395 99.4 Plus
X 23542271 X 2621378..2621716 788..1126 1680 99.7 Plus
X 23542271 X 2620309..2620593 16..300 1380 98.9 Plus
Blast to na_te.dros performed on 2014-11-26 15:31:05 has no hits.

BO15333.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:05 Download gff for BO15333.complete
Subject Subject Range Query Range Percent Splice Strand
CG9904-RA 1..1113 17..1129 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:36 Download gff for BO15333.complete
Subject Subject Range Query Range Percent Splice Strand
CG9904-RA 510..1624 16..1130 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:10 Download gff for BO15333.complete
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 512..1621 17..1128 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:05 Download gff for BO15333.complete
Subject Subject Range Query Range Percent Splice Strand
CG9904-RA 510..1624 16..1130 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:47 Download gff for BO15333.complete
Subject Subject Range Query Range Percent Splice Strand
Seipin-RA 512..1621 17..1128 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:47 Download gff for BO15333.complete
Subject Subject Range Query Range Percent Splice Strand
X 2620310..2620593 17..300 98 -> Plus
X 2620825..2621312 301..788 99 -> Plus
X 2621379..2621716 789..1128 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:10 Download gff for BO15333.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2514343..2514626 17..300 98 -> Plus
arm_X 2514858..2515345 301..788 99 -> Plus
arm_X 2515412..2515749 789..1128 99   Plus

BO15333.pep Sequence

Translation from 16 to 1144

> BO15333.pep
MNILLRLIVFALDPLGLGRRFLIRPAVNLGWNVYDRVRSKADEKVGTVRE
LVLRLGLIAFAVVLIIWLAVFMYAAFYYVYMPAISHTRPVHMQFKTCLET
STPCTFPHAHVSLTKKQQLLMVGQAYKVIVNIDMPESPQNLELGMFMVCA
EMRDYDSMLRGHSCRSAMMRYRSPLIRMISTWVLSPLYVLGWKEEFQQVP
VEIFSRYLEERQHPITDVYVEIQSQKIQFYTVTLHIVADFTGLRYIMFNW
PVLSAIVAISTNLFFILVVFLLSWYHWSDAKWLHSVQIKYARLTKSLEPG
VIHSKASSLRDDDDDLVAYSDKSDIADVGGDTLSDVDADDLVLVKKSRSG
KRESPDALRKRPTKKTTADHASFLDH

BO15333.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
Seipin-PA 370 CG9904-PA 1..370 1..370 1919 100 Plus