Clone Sequence Records
BO15333.3prime Sequence
878 bp (844 high quality bases) assembled on 2006-06-16
> BO15333.3prime
ATGGTCTAGAAAGCTTGCATGGTCCGCGGTGGTCTTCTTTGTGGGACGCT
TACGCAGCGCATCGGGCGATTCGCGCTTGCCACTGCGGGATTTCTTGACC
AGCACCAAGTCATCGGCATCGACGTCGCTCAGCGTGTCGCCGCCCACGTC
CGCAATATCGGACTTATCACTGTAGGCAACCAGGTCGTCGTCGTCGTCGC
GCAGGCTGCTCGCTTTGGAGTGTATTACGCCGGGCTCGAGCGACTTCGTG
AGCCGGGCGTACTTGATTTGCACGCTATGCAGCCACTTGGCGTCGGACCA
GTGGTACCAGCTGAGCAGAAAGACGACCAGTATAAAGAACAGATTGGTGC
TAATGGCCACTATGGCCGACAGTACGGGCCAGTTGAACATGATGTACCGC
AGACCGGTAAAATCGGCAACTATGTGCAGGGTGACCGTGTAGAACTGGAT
CTTCTGCGACTGTATCTCCACGTAGACATCCGTTATGGGATGTTGTCGCT
CCTCCAGATACCGTGAGAATATCTCAACTGGCACCTGCTGGAACTCCTCT
TTCCAGCCAAGCACATAGAGCGGACTCAGGACCCACGTGGAGATCATGCG
GATCAGCGGCGAACGATAGCGCATCATGGCAGACCGACAGGAGTGACCCC
TCAGCATCGAGTCGTAGTCCCTCATCTCGGCGCACACCATGAACATGCCC
AGCTCGAGATTTTGCGGCGACTCCGGCATGTCGATGTTCACGATCACCTT
GTACGCCTGGCCAACCATCAGGAGTTGCTGCTTCTTCGTCAGCGAGACGT
GCGCGTGCGGAAAGGTGCAGGGCGTGCTGGTCTCCAGGCAGGTTTTGAAC
TGCATGTGAACGGGTCGGGTGTGCGATA
BO15333.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9904-PA | 1113 | CG9904-RA | 251..1110 | 878..19 | 4200 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Seipin-RA | 2045 | CG9904-RA | 762..1621 | 878..19 | 4240 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2620825..2621312 | 844..357 | 2395 | 99.4 | Minus |
X | 23542271 | X | 2621378..2621716 | 357..19 | 1680 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:40:29 has no hits.
BO15333.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:28 Download gff for
BO15333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-PA | 252..1113 | 16..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:44 Download gff for
BO15333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-PA | 252..1113 | 16..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:34:53 Download gff for
BO15333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Seipin-RA | 763..1625 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:50 Download gff for
BO15333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Seipin-RA | 763..1625 | 15..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:50 Download gff for
BO15333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2620561..2620593 | 845..877 | 100 | -> | Minus |
X | 2620825..2621312 | 357..844 | 99 | -> | Minus |
X | 2621379..2621720 | 15..356 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:34:53 Download gff for
BO15333.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2514594..2514626 | 845..877 | 100 | -> | Minus |
arm_X | 2514858..2515345 | 357..844 | 99 | -> | Minus |
arm_X | 2515412..2515753 | 15..356 | 99 | | Minus |
BO15333.5prime Sequence
853 bp (758 high quality bases) assembled on 2006-06-16
> BO15333.5prime
GAAGTTATCAGTCGACATGAACATCCTGCTGCGCTTAATCGTCTTCGCCC
TGGATCCTCTGGGTCTGGGCCGACGTTTCCTCATCCGGCCTGCCGTGAAT
CTGGGCTGGAACGTCTACGATCGCGTGCGCAGCAAGGCGGACGAGAAGGT
GGGCACGGTGCGAGAGCTGGTCCTCCGGCTGGGCCTCATCGCCTTCGCCG
TGGTGCTCATCATCTGGCTGGCGGTCTTCATGTACGCCGCCTTCTACTAC
GTCTACATGCCGGCCATATCGCACACCCGACCCGTTCACATGCAGTTCAA
AACCTGCCTGGAGACCAGCACGCCCTGCACCTTTCCGCACGCGCACGTCT
CGCTGACGAAGAAGCAGCAACTCCTGATGGTTGGCCAGGCGTACAAGGTG
ATCGTGAACATCGACATGCCGGAGTCGCCGCAAAATCTCGAGCTGGGCAT
GTTCATGGTGTGCGCCGAGATGAGGGACTACGACTCGATGCTGAGGGGTC
ACTCCTGTCGGTCTGCCATGATGCGCTATCGTTCGCCGCTGATCCGCATG
ATCTCCACGTGGGTCCTGAGTCCGCTCTATGTGCTTGGCTGGAAAGAGGA
GTTCCAGCAGGTGCCAGTTGAGATATTCTCACGGTATCTGGAGGAGCGAC
AACATCCCATAACGGATGTCTACGTGGAGATACAGTCGCAGAAGATCCAG
TTCTACACGGTCACCCTGCACATAGTTGCCGATTTTACCGGTCTGCGGTA
CATCATGTTCAACTGGCCCGTACTGTCGGCCATAGTGGCCATTAGCACCA
ATCTGTTCTTTATACTGGTCGTCTTTCTGCTCAGCTGGTACCACTGGTCC
GAC
BO15333.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9904-PA | 1113 | CG9904-RA | 1..837 | 17..853 | 4035 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Seipin-RA | 2045 | CG9904-RA | 511..1348 | 16..853 | 4100 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2620825..2621312 | 301..788 | 2395 | 99.4 | Plus |
X | 23542271 | X | 2620309..2620593 | 16..300 | 1380 | 98.9 | Plus |
X | 23542271 | X | 2621378..2621443 | 788..853 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:31:04 has no hits.
BO15333.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:29 Download gff for
BO15333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:45 Download gff for
BO15333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:10:20 Download gff for
BO15333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Seipin-RA | 511..1348 | 16..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:39 Download gff for
BO15333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Seipin-RA | 511..1348 | 16..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:39 Download gff for
BO15333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2620309..2620593 | 16..300 | 98 | -> | Plus |
X | 2620825..2621312 | 301..788 | 99 | -> | Plus |
X | 2621379..2621443 | 789..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:10:20 Download gff for
BO15333.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2514342..2514626 | 16..300 | 98 | -> | Plus |
arm_X | 2514858..2515345 | 301..788 | 99 | -> | Plus |
arm_X | 2515412..2515476 | 789..853 | 100 | | Plus |
BO15333.complete Sequence
1144 bp (1144 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633414
> BO15333.complete
GAAGTTATCAGTCGACATGAACATCCTGCTGCGCTTAATCGTCTTCGCCC
TGGATCCTCTGGGTCTGGGCCGACGTTTCCTCATCCGGCCTGCCGTGAAT
CTGGGCTGGAACGTCTACGATCGCGTGCGCAGCAAGGCGGACGAGAAGGT
GGGCACGGTGCGAGAGCTGGTCCTCCGGCTGGGCCTCATCGCCTTCGCCG
TGGTGCTCATCATCTGGCTGGCGGTCTTCATGTACGCCGCCTTCTACTAC
GTCTACATGCCGGCCATATCGCACACCCGACCCGTTCACATGCAGTTCAA
AACCTGCCTGGAGACCAGCACGCCCTGCACCTTTCCGCACGCGCACGTCT
CGCTGACGAAGAAGCAGCAACTCCTGATGGTTGGCCAGGCGTACAAGGTG
ATCGTGAACATCGACATGCCGGAGTCGCCGCAAAATCTCGAGCTGGGCAT
GTTCATGGTGTGCGCCGAGATGAGGGACTACGACTCGATGCTGAGGGGTC
ACTCCTGTCGGTCTGCCATGATGCGCTATCGTTCGCCGCTGATCCGCATG
ATCTCCACGTGGGTCCTGAGTCCGCTCTATGTGCTTGGCTGGAAAGAGGA
GTTCCAGCAGGTGCCAGTTGAGATATTCTCACGGTATCTGGAGGAGCGAC
AACATCCCATAACGGATGTCTACGTGGAGATACAGTCGCAGAAGATCCAG
TTCTACACGGTCACCCTGCACATAGTTGCCGATTTTACCGGTCTGCGGTA
CATCATGTTCAACTGGCCCGTACTGTCGGCCATAGTGGCCATTAGCACCA
ATCTGTTCTTTATACTGGTCGTCTTTCTGCTCAGCTGGTACCACTGGTCC
GACGCCAAGTGGCTGCATAGCGTGCAAATCAAGTACGCCCGGCTCACGAA
GTCGCTCGAGCCCGGCGTAATACACTCCAAAGCGAGCAGCCTGCGCGACG
ACGACGACGACCTGGTTGCCTACAGTGATAAGTCCGATATTGCGGACGTG
GGCGGCGACACGCTGAGCGACGTCGATGCCGATGACTTGGTGCTGGTCAA
GAAATCCCGCAGTGGCAAGCGCGAATCGCCCGATGCGCTGCGTAAGCGTC
CCACAAAGAAGACCACCGCGGACCATGCAAGCTTTCTAGACCAT
BO15333.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Seipin-RA | 1113 | CG9904-PA | 1..1110 | 17..1126 | 5445 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Seipin-RA | 2045 | CG9904-RA | 511..1621 | 16..1126 | 5450 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2620825..2621312 | 301..788 | 2395 | 99.4 | Plus |
X | 23542271 | X | 2621378..2621716 | 788..1126 | 1680 | 99.7 | Plus |
X | 23542271 | X | 2620309..2620593 | 16..300 | 1380 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:31:05 has no hits.
BO15333.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:05 Download gff for
BO15333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-RA | 1..1113 | 17..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:36 Download gff for
BO15333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-RA | 510..1624 | 16..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:10 Download gff for
BO15333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Seipin-RA | 512..1621 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:05 Download gff for
BO15333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9904-RA | 510..1624 | 16..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:47 Download gff for
BO15333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Seipin-RA | 512..1621 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:47 Download gff for
BO15333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2620310..2620593 | 17..300 | 98 | -> | Plus |
X | 2620825..2621312 | 301..788 | 99 | -> | Plus |
X | 2621379..2621716 | 789..1128 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:10 Download gff for
BO15333.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2514343..2514626 | 17..300 | 98 | -> | Plus |
arm_X | 2514858..2515345 | 301..788 | 99 | -> | Plus |
arm_X | 2515412..2515749 | 789..1128 | 99 | | Plus |
BO15333.pep Sequence
Translation from 16 to 1144
> BO15333.pep
MNILLRLIVFALDPLGLGRRFLIRPAVNLGWNVYDRVRSKADEKVGTVRE
LVLRLGLIAFAVVLIIWLAVFMYAAFYYVYMPAISHTRPVHMQFKTCLET
STPCTFPHAHVSLTKKQQLLMVGQAYKVIVNIDMPESPQNLELGMFMVCA
EMRDYDSMLRGHSCRSAMMRYRSPLIRMISTWVLSPLYVLGWKEEFQQVP
VEIFSRYLEERQHPITDVYVEIQSQKIQFYTVTLHIVADFTGLRYIMFNW
PVLSAIVAISTNLFFILVVFLLSWYHWSDAKWLHSVQIKYARLTKSLEPG
VIHSKASSLRDDDDDLVAYSDKSDIADVGGDTLSDVDADDLVLVKKSRSG
KRESPDALRKRPTKKTTADHASFLDH
BO15333.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Seipin-PA | 370 | CG9904-PA | 1..370 | 1..370 | 1919 | 100 | Plus |