Clone Sequence Records
BO15334.3prime Sequence
623 bp (622 high quality bases) assembled on 2006-06-16
> BO15334.3prime
ATGGTCTAGAAAGCTTGCAACTTCTTTGGTGTACCTCGTTATTGCAGTCA
CTGCGTCTGCGGTCGCGACTGATTTCTCCAGCCTAAACTTTTGCACCTCG
TCAAAGTAATCCTTTGCCTCCTGTCTGTGATAAAGTTTCGCCAAGTCAGT
GCAAGTTTTGCCAACACCATCCAAAGCCGCCAAGTCTGCGCCGTGCGTAA
CAAGGACTTTGATGAGCTCCATGCTAGCGTTCATAACCACTGCGCGCATA
AGAAGGGTCCAGCCGCAGACGTCTCTGGCCTCAGCATTCGCTCCCGCTTC
GAGAGCGAACTTGACTATTTCCAGTTGATTGGCATCAACGGCGCAGTGGG
CGGGAGTCATGCCGTTACTGTCCGTCGCCTCCAGGCGGGCCTTCTTGTTC
AGCAGAATGCGAGCGGACGGCAGGTGACCGTAGTAAAAAGCCAGGTGCAG
CGGGGTCCGGCCGCTTCCCGGATCTCCAATGTGGACGCTGCAACCGGCCG
AGAGCAGCAAGTCAATGATGCACATCTCGCCCTGAATAATGGCATTGGCA
AGTGGCAGGAATCCGTTGGAAGCCGGATATTCCATTAGGCTCGGGCGACG
ACGCAGCATGTCGACTGATAACT
BO15334.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-PB | 594 | CG9766-RB | 1..591 | 609..19 | 2955 | 100 | Minus |
CG9766-PA | 594 | CG9766-RA | 1..591 | 609..19 | 2955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-RC | 1502 | CG9766-RC | 565..1155 | 609..19 | 2955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4269568..4269792 | 19..243 | 1125 | 100 | Plus |
3R | 32079331 | 3R | 4269848..4270052 | 240..444 | 1025 | 100 | Plus |
3R | 32079331 | 3R | 4270109..4270273 | 445..609 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:10:29 has no hits.
BO15334.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:30 Download gff for
BO15334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-PA | 1..594 | 16..609 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:48 Download gff for
BO15334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-PA | 1..594 | 16..609 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:49:09 Download gff for
BO15334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RB | 245..837 | 19..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:31:59 Download gff for
BO15334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RC | 563..1155 | 19..612 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:31:59 Download gff for
BO15334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4269568..4269788 | 19..239 | 100 | <- | Plus |
3R | 4269848..4270052 | 240..444 | 100 | <- | Plus |
3R | 4270109..4270275 | 445..612 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:49:09 Download gff for
BO15334.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 95290..95510 | 19..239 | 100 | <- | Plus |
arm_3R | 95570..95774 | 240..444 | 100 | <- | Plus |
arm_3R | 95831..95997 | 445..612 | 99 | | Plus |
BO15334.5prime Sequence
623 bp (622 high quality bases) assembled on 2006-06-16
> BO15334.5prime
GAAGTTATCAGTCGACATGCTGCGTCGTCGCCCGAGCCTAATGGAATATC
CGGCTTCCAACGGATTCCTGCCACTTGCCAATGCCATTATTCAGGGCGAG
ATGTGCATCATTGACTTGCTGCTCTCGGCCGGTTGCAGCGTCCACATTGG
AGATCCGGGAAGCGGCCGGACCCCGCTGCACCTGGCTTTTTACTACGGTC
ACCTGCCGTCCGCTCGCATTCTGCTGAACAAGAAGGCCCGCCTGGAGGCG
ACGGACAGTAACGGCATGACTCCCGCCCACTGCGCCGTTGATGCCAATCA
ACTGGAAATAGTCAAGTTCGCTCTCGAAGCGGGAGCGAATGCTGAGGCCA
GAGACGTCTGCGGCTGGACCCTTCTTATGCGCGCAGTGGTTATGAACGCT
AGCATGGAGCTCATCAAAGTCCTTGTTACGCACGGCGCAGACTTGGCGGC
TTTGGATGGTGTTGGCAAAACTTGCACTGACTTGGCGAAACTTTATCACA
GACAGGAGGCAAAGGATTACTTTGACGAGGTGCAAAAGTTTAGGCTGGAG
AAATCAGTCGCGACCGCAGACGCAGTGACTGCAATAACGAGGTACACCAA
AGAAGTTGCAAGCTTTCTAGACC
BO15334.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-PB | 594 | CG9766-RB | 1..591 | 17..607 | 2955 | 100 | Plus |
CG9766-PA | 594 | CG9766-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-RC | 1502 | CG9766-RC | 565..1155 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4269568..4269792 | 607..383 | 1125 | 100 | Minus |
3R | 32079331 | 3R | 4269848..4270052 | 386..182 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 4270109..4270273 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:27:28 has no hits.
BO15334.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:31 Download gff for
BO15334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-PA | 1..594 | 17..610 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:49 Download gff for
BO15334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-PA | 1..594 | 17..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:28 Download gff for
BO15334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RB | 245..837 | 14..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:24 Download gff for
BO15334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RC | 563..1155 | 14..607 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:24 Download gff for
BO15334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4269568..4269788 | 387..607 | 100 | <- | Minus |
3R | 4269848..4270052 | 182..386 | 100 | <- | Minus |
3R | 4270109..4270275 | 14..181 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:28 Download gff for
BO15334.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 95290..95510 | 387..607 | 100 | <- | Minus |
arm_3R | 95570..95774 | 182..386 | 100 | <- | Minus |
arm_3R | 95831..95997 | 14..181 | 99 | | Minus |
BO15334.complete Sequence
625 bp (625 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633415
> BO15334.complete
GAAGTTATCAGTCGACATGCTGCGTCGTCGCCCGAGCCTAATGGAATATC
CGGCTTCCAACGGATTCCTGCCACTTGCCAATGCCATTATTCAGGGCGAG
ATGTGCATCATTGACTTGCTGCTCTCGGCCGGTTGCAGCGTCCACATTGG
AGATCCGGGAAGCGGCCGGACCCCGCTGCACCTGGCTTTTTACTACGGTC
ACCTGCCGTCCGCTCGCATTCTGCTGAACAAGAAGGCCCGCCTGGAGGCG
ACGGACAGTAACGGCATGACTCCCGCCCACTGCGCCGTTGATGCCAATCA
ACTGGAAATAGTCAAGTTCGCTCTCGAAGCGGGAGCGAATGCTGAGGCCA
GAGACGTCTGCGGCTGGACCCTTCTTATGCGCGCAGTGGTTATGAACGCT
AGCATGGAGCTCATCAAAGTCCTTGTTACGCACGGCGCAGACTTGGCGGC
TTTGGATGGTGTTGGCAAAACTTGCACTGACTTGGCGAAACTTTATCACA
GACAGGAGGCAAAGGATTACTTTGACGAGGTGCAAAAGTTTAGGCTGGAG
AAATCAGTCGCGACCGCAGACGCAGTGACTGCAATAACGAGGTACACCAA
AGAAGTTGCAAGCTTTCTAGACCAT
BO15334.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-RC | 1023 | CG9766-PC | 430..1020 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-RC | 1502 | CG9766-RC | 565..1155 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4269568..4269792 | 607..383 | 1125 | 100 | Minus |
3R | 32079331 | 3R | 4269848..4270052 | 386..182 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 4270109..4270273 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:15:31 has no hits.
BO15334.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:08 Download gff for
BO15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RC | 428..1023 | 14..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:38 Download gff for
BO15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RC | 428..1020 | 14..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:15:20 Download gff for
BO15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RB | 247..837 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:09 Download gff for
BO15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RC | 428..1020 | 14..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:18 Download gff for
BO15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9766-RC | 565..1155 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:18 Download gff for
BO15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4269565..4269788 | 387..609 | 99 | <- | Minus |
3R | 4269848..4270052 | 182..386 | 100 | <- | Minus |
3R | 4270109..4270273 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:15:20 Download gff for
BO15334.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 95287..95510 | 387..609 | 99 | <- | Minus |
arm_3R | 95570..95774 | 182..386 | 100 | <- | Minus |
arm_3R | 95831..95995 | 17..181 | 100 | | Minus |
BO15334.pep Sequence
Translation from 16 to 625
> BO15334.pep
MLRRRPSLMEYPASNGFLPLANAIIQGEMCIIDLLLSAGCSVHIGDPGSG
RTPLHLAFYYGHLPSARILLNKKARLEATDSNGMTPAHCAVDANQLEIVK
FALEAGANAEARDVCGWTLLMRAVVMNASMELIKVLVTHGADLAALDGVG
KTCTDLAKLYHRQEAKDYFDEVQKFRLEKSVATADAVTAITRYTKEVASF
LDH
BO15334.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9766-PC | 340 | CG9766-PC | 144..340 | 1..197 | 1009 | 100 | Plus |
nompC-PA | 1619 | CG11020-PA | 1009..1105 | 15..111 | 204 | 43.3 | Plus |
nompC-PD | 1726 | CG11020-PD | 1009..1105 | 15..111 | 204 | 43.3 | Plus |
nompC-PE | 1732 | CG11020-PE | 1009..1105 | 15..111 | 204 | 43.3 | Plus |
nompC-PF | 1735 | CG11020-PF | 1009..1105 | 15..111 | 204 | 43.3 | Plus |
nompC-PA | 1619 | CG11020-PA | 974..1101 | 15..141 | 161 | 34.9 | Plus |
nompC-PD | 1726 | CG11020-PD | 974..1101 | 15..141 | 161 | 34.9 | Plus |
nompC-PE | 1732 | CG11020-PE | 974..1101 | 15..141 | 161 | 34.9 | Plus |