Clone BO15334 Report

Search the DGRC for BO15334

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG9766-RA
Protein status:BO15334.pep: validated full length
Sequenced Size:625

Clone Sequence Records

BO15334.3prime Sequence

623 bp (622 high quality bases) assembled on 2006-06-16

> BO15334.3prime
ATGGTCTAGAAAGCTTGCAACTTCTTTGGTGTACCTCGTTATTGCAGTCA
CTGCGTCTGCGGTCGCGACTGATTTCTCCAGCCTAAACTTTTGCACCTCG
TCAAAGTAATCCTTTGCCTCCTGTCTGTGATAAAGTTTCGCCAAGTCAGT
GCAAGTTTTGCCAACACCATCCAAAGCCGCCAAGTCTGCGCCGTGCGTAA
CAAGGACTTTGATGAGCTCCATGCTAGCGTTCATAACCACTGCGCGCATA
AGAAGGGTCCAGCCGCAGACGTCTCTGGCCTCAGCATTCGCTCCCGCTTC
GAGAGCGAACTTGACTATTTCCAGTTGATTGGCATCAACGGCGCAGTGGG
CGGGAGTCATGCCGTTACTGTCCGTCGCCTCCAGGCGGGCCTTCTTGTTC
AGCAGAATGCGAGCGGACGGCAGGTGACCGTAGTAAAAAGCCAGGTGCAG
CGGGGTCCGGCCGCTTCCCGGATCTCCAATGTGGACGCTGCAACCGGCCG
AGAGCAGCAAGTCAATGATGCACATCTCGCCCTGAATAATGGCATTGGCA
AGTGGCAGGAATCCGTTGGAAGCCGGATATTCCATTAGGCTCGGGCGACG
ACGCAGCATGTCGACTGATAACT

BO15334.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-PB 594 CG9766-RB 1..591 609..19 2955 100 Minus
CG9766-PA 594 CG9766-RA 1..591 609..19 2955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-RC 1502 CG9766-RC 565..1155 609..19 2955 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4269568..4269792 19..243 1125 100 Plus
3R 32079331 3R 4269848..4270052 240..444 1025 100 Plus
3R 32079331 3R 4270109..4270273 445..609 825 100 Plus
Blast to na_te.dros performed on 2015-02-06 11:10:29 has no hits.

BO15334.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:30 Download gff for BO15334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-PA 1..594 16..609 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:48 Download gff for BO15334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-PA 1..594 16..609 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:49:09 Download gff for BO15334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-RB 245..837 19..612 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:31:59 Download gff for BO15334.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-RC 563..1155 19..612 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:31:59 Download gff for BO15334.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4269568..4269788 19..239 100 <- Plus
3R 4269848..4270052 240..444 100 <- Plus
3R 4270109..4270275 445..612 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:49:09 Download gff for BO15334.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 95290..95510 19..239 100 <- Plus
arm_3R 95570..95774 240..444 100 <- Plus
arm_3R 95831..95997 445..612 99   Plus

BO15334.5prime Sequence

623 bp (622 high quality bases) assembled on 2006-06-16

> BO15334.5prime
GAAGTTATCAGTCGACATGCTGCGTCGTCGCCCGAGCCTAATGGAATATC
CGGCTTCCAACGGATTCCTGCCACTTGCCAATGCCATTATTCAGGGCGAG
ATGTGCATCATTGACTTGCTGCTCTCGGCCGGTTGCAGCGTCCACATTGG
AGATCCGGGAAGCGGCCGGACCCCGCTGCACCTGGCTTTTTACTACGGTC
ACCTGCCGTCCGCTCGCATTCTGCTGAACAAGAAGGCCCGCCTGGAGGCG
ACGGACAGTAACGGCATGACTCCCGCCCACTGCGCCGTTGATGCCAATCA
ACTGGAAATAGTCAAGTTCGCTCTCGAAGCGGGAGCGAATGCTGAGGCCA
GAGACGTCTGCGGCTGGACCCTTCTTATGCGCGCAGTGGTTATGAACGCT
AGCATGGAGCTCATCAAAGTCCTTGTTACGCACGGCGCAGACTTGGCGGC
TTTGGATGGTGTTGGCAAAACTTGCACTGACTTGGCGAAACTTTATCACA
GACAGGAGGCAAAGGATTACTTTGACGAGGTGCAAAAGTTTAGGCTGGAG
AAATCAGTCGCGACCGCAGACGCAGTGACTGCAATAACGAGGTACACCAA
AGAAGTTGCAAGCTTTCTAGACC

BO15334.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-PB 594 CG9766-RB 1..591 17..607 2955 100 Plus
CG9766-PA 594 CG9766-RA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-RC 1502 CG9766-RC 565..1155 17..607 2955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4269568..4269792 607..383 1125 100 Minus
3R 32079331 3R 4269848..4270052 386..182 1025 100 Minus
3R 32079331 3R 4270109..4270273 181..17 825 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:27:28 has no hits.

BO15334.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:31 Download gff for BO15334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-PA 1..594 17..610 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:49 Download gff for BO15334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-PA 1..594 17..610 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:28 Download gff for BO15334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-RB 245..837 14..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:24 Download gff for BO15334.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9766-RC 563..1155 14..607 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:24 Download gff for BO15334.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4269568..4269788 387..607 100 <- Minus
3R 4269848..4270052 182..386 100 <- Minus
3R 4270109..4270275 14..181 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:28 Download gff for BO15334.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 95290..95510 387..607 100 <- Minus
arm_3R 95570..95774 182..386 100 <- Minus
arm_3R 95831..95997 14..181 99   Minus

BO15334.complete Sequence

625 bp (625 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633415

> BO15334.complete
GAAGTTATCAGTCGACATGCTGCGTCGTCGCCCGAGCCTAATGGAATATC
CGGCTTCCAACGGATTCCTGCCACTTGCCAATGCCATTATTCAGGGCGAG
ATGTGCATCATTGACTTGCTGCTCTCGGCCGGTTGCAGCGTCCACATTGG
AGATCCGGGAAGCGGCCGGACCCCGCTGCACCTGGCTTTTTACTACGGTC
ACCTGCCGTCCGCTCGCATTCTGCTGAACAAGAAGGCCCGCCTGGAGGCG
ACGGACAGTAACGGCATGACTCCCGCCCACTGCGCCGTTGATGCCAATCA
ACTGGAAATAGTCAAGTTCGCTCTCGAAGCGGGAGCGAATGCTGAGGCCA
GAGACGTCTGCGGCTGGACCCTTCTTATGCGCGCAGTGGTTATGAACGCT
AGCATGGAGCTCATCAAAGTCCTTGTTACGCACGGCGCAGACTTGGCGGC
TTTGGATGGTGTTGGCAAAACTTGCACTGACTTGGCGAAACTTTATCACA
GACAGGAGGCAAAGGATTACTTTGACGAGGTGCAAAAGTTTAGGCTGGAG
AAATCAGTCGCGACCGCAGACGCAGTGACTGCAATAACGAGGTACACCAA
AGAAGTTGCAAGCTTTCTAGACCAT

BO15334.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-RC 1023 CG9766-PC 430..1020 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-RC 1502 CG9766-RC 565..1155 17..607 2955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4269568..4269792 607..383 1125 100 Minus
3R 32079331 3R 4269848..4270052 386..182 1025 100 Minus
3R 32079331 3R 4270109..4270273 181..17 825 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:15:31 has no hits.

BO15334.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:08 Download gff for BO15334.complete
Subject Subject Range Query Range Percent Splice Strand
CG9766-RC 428..1023 14..610 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:38 Download gff for BO15334.complete
Subject Subject Range Query Range Percent Splice Strand
CG9766-RC 428..1020 14..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:15:20 Download gff for BO15334.complete
Subject Subject Range Query Range Percent Splice Strand
CG9766-RB 247..837 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:09 Download gff for BO15334.complete
Subject Subject Range Query Range Percent Splice Strand
CG9766-RC 428..1020 14..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:18 Download gff for BO15334.complete
Subject Subject Range Query Range Percent Splice Strand
CG9766-RC 565..1155 17..609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:18 Download gff for BO15334.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4269565..4269788 387..609 99 <- Minus
3R 4269848..4270052 182..386 100 <- Minus
3R 4270109..4270273 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:15:20 Download gff for BO15334.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 95287..95510 387..609 99 <- Minus
arm_3R 95570..95774 182..386 100 <- Minus
arm_3R 95831..95995 17..181 100   Minus

BO15334.pep Sequence

Translation from 16 to 625

> BO15334.pep
MLRRRPSLMEYPASNGFLPLANAIIQGEMCIIDLLLSAGCSVHIGDPGSG
RTPLHLAFYYGHLPSARILLNKKARLEATDSNGMTPAHCAVDANQLEIVK
FALEAGANAEARDVCGWTLLMRAVVMNASMELIKVLVTHGADLAALDGVG
KTCTDLAKLYHRQEAKDYFDEVQKFRLEKSVATADAVTAITRYTKEVASF
LDH

BO15334.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9766-PC 340 CG9766-PC 144..340 1..197 1009 100 Plus
nompC-PA 1619 CG11020-PA 1009..1105 15..111 204 43.3 Plus
nompC-PD 1726 CG11020-PD 1009..1105 15..111 204 43.3 Plus
nompC-PE 1732 CG11020-PE 1009..1105 15..111 204 43.3 Plus
nompC-PF 1735 CG11020-PF 1009..1105 15..111 204 43.3 Plus
nompC-PA 1619 CG11020-PA 974..1101 15..141 161 34.9 Plus
nompC-PD 1726 CG11020-PD 974..1101 15..141 161 34.9 Plus
nompC-PE 1732 CG11020-PE 974..1101 15..141 161 34.9 Plus