Clone BO15337 Report

Search the DGRC for BO15337

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Ed-RA
Protein status:BO15337.pep: validated full length
Sequenced Size:715

Clone Sequence Records

BO15337.3prime Sequence

713 bp (713 high quality bases) assembled on 2006-06-16

> BO15337.3prime
ATGGTCTAGAAAGCTTGCGTAGTTCTGGCGTCTCTGCGAGTTGCGGGTCT
GATTGGCCAGGCAGCAGGCGAAAATGAAGGCCACAAGCTCAACAGCAGTC
ACACCCAGGCCAGCGTACTTGATGATGCTCACGTTGGTGTCCCAGAAGGA
ATCAACGGCCTTCAGGCAACTGGATCGCGTCATGACTTGGGTTAGTGCGC
AGGTTCCATTGGAGGGCGAGTCGCAGCAGGAGGCGGGATACGTAATGCCG
TAATCAGCGAAGCCGTTCAAGCCGCAGCACTTGAACGATCGCTGCAGTGT
GTCCATGAGGAGGGCATCGGTCTTGCGTTGATCCCATATGGTCTGGACGA
TCTTCTCCAAAGATTGCTGTATCTGCACATGGTCCACCCACACGTAGATA
ATGAGAGCTAGCTGACTAACCAGCAGCACCAGCATGACCACAGAGTACGA
GGTCAGAGCACAGGAATTCTCGCGTATGGCGCCGCAGCATCCCATGAAGG
CTACCAGGAAGACTACGCAGCCAAGGACCAGGATGATGATGGCCACGCTG
TTGGCCGTGAAGGTCTCGCCGACGCCCGAGAAGTCCTTTATGGTGGACAC
CATGATAGAGCCGAAGGTGATAAGCAAAATGCCGCATATCACAAACAGTA
TGTTGAATATGAACAGCACATATTTCACAAAAACGCCGCCGCAATCCATG
TCGACTGATAACT

BO15337.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12846-PA 684 Tsp42Ed-RA 1..681 699..19 3305 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-RB 1248 CG12846-RB 89..769 699..19 3345 99.4 Minus
Tsp42Ed-RA 886 CG12846-RA 89..769 699..19 3345 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7010103..7010301 88..286 995 100 Plus
2R 25286936 2R 7010663..7010855 448..640 920 98.4 Plus
2R 25286936 2R 7010432..7010594 286..448 800 99.4 Plus
2R 25286936 2R 7009977..7010047 19..89 355 100 Plus
2R 25286936 2R 7011592..7011651 640..699 300 100 Plus
Blast to na_te.dros performed on 2015-02-03 05:54:09 has no hits.

BO15337.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:32 Download gff for BO15337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12846-PA 1..684 15..699 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:50 Download gff for BO15337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12846-PA 1..684 15..699 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:19:16 Download gff for BO15337.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 83..772 15..708 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:34:54 Download gff for BO15337.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 83..772 15..708 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:34:54 Download gff for BO15337.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7010103..7010300 88..285 100 <- Plus
2R 7009973..7010045 15..87 97 <- Plus
2R 7010432..7010593 286..447 99 <- Plus
2R 7010663..7010854 448..639 98 <- Plus
2R 7011592..7011657 640..708 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:19:16 Download gff for BO15337.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2897608..2897805 88..285 100 <- Plus
arm_2R 2897937..2898098 286..447 99 <- Plus
arm_2R 2898168..2898359 448..639 98 <- Plus
arm_2R 2899097..2899162 640..708 95   Plus
arm_2R 2897478..2897550 15..87 97 <- Plus

BO15337.5prime Sequence

713 bp (686 high quality bases) assembled on 2006-06-16

> BO15337.5prime
GAAGTTATCAGTCGACATGGATTGCGGCGGCGTTTTTGTGAAATATGTGC
TGTTCATATTCAACATACTGTTTGTGATATGCGGCATTTTGCTTATCACC
TTCGGCTCTATCATGGTGTCCACCATAAAGGACTTCTCGGGCGTCGGCGA
GACCTTCACGGCCAACAGCGTGGCCATCATCATCCTGGTCCTTGGCTGCG
TAGTCTTCCTGGTAGCCTTCATGGGATGCTGCGGCGCCATACGCGAGAAT
TCCTGTGCTCTGACCTCGTACTCTGTGGTCATGCTGGTGCTGCTGGTTAG
TCAGCTAGCTCTCATTATCTACGTGTGGGTGGACCATGTGCAGATACAGC
AATCTTTGGAGAAGATCGTCCAGACCATATGGGATCAACGCAAGACCGAT
GCCCTCCTCATGGACACACTGCAGCGATCGTTCAAGTGCTGCGGCTTGAA
CGGCTTCGCTGATTACGGCATTACGTATCCCGCCTCCTGCTGCGACTCGC
CCTCCAATGGAACCTGCGCACTAACCCAAGTCATGACGCGATCCAGTTGC
CTGAAGGCCGTTGATTCCTTCTGGGACACCAACGTGAGCATCATCAAGTA
CGCTGGCCTGGGTGTGACTGCTGTTGAGCTTGTGGCCTTCATTTTCGCCT
GCTGCCTGGCCAATCAGACCCGCAACTCGCAGAGACGCCAGAACTACGCA
AGCTTTCTAGACC

BO15337.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12846-PA 684 Tsp42Ed-RA 1..681 17..697 3305 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-RB 1248 CG12846-RB 89..769 17..697 3345 99.4 Plus
Tsp42Ed-RA 886 CG12846-RA 89..769 17..697 3345 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7010103..7010301 628..430 995 100 Minus
2R 25286936 2R 7010663..7010855 268..76 920 98.4 Minus
2R 25286936 2R 7010432..7010594 430..268 800 99.4 Minus
2R 25286936 2R 7009977..7010047 697..627 355 100 Minus
2R 25286936 2R 7011592..7011651 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:21:36 has no hits.

BO15337.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:33 Download gff for BO15337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12846-PA 1..684 17..701 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:52 Download gff for BO15337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12846-PA 1..684 17..701 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:03 Download gff for BO15337.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 83..772 8..701 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:52 Download gff for BO15337.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 83..772 8..701 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:52 Download gff for BO15337.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7009973..7010045 629..701 97 <- Minus
2R 7010103..7010300 431..628 100 <- Minus
2R 7010432..7010593 269..430 99 <- Minus
2R 7010663..7010854 77..268 98 <- Minus
2R 7011592..7011657 8..76 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:03 Download gff for BO15337.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2897478..2897550 629..701 97 <- Minus
arm_2R 2897608..2897805 431..628 100 <- Minus
arm_2R 2897937..2898098 269..430 99 <- Minus
arm_2R 2898168..2898359 77..268 98 <- Minus
arm_2R 2899097..2899162 8..76 95   Minus

BO15337.complete Sequence

715 bp (715 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633416

> BO15337.complete
GAAGTTATCAGTCGACATGGATTGCGGCGGCGTTTTTGTGAAATATGTGC
TGTTCATATTCAACATACTGTTTGTGATATGCGGCATTTTGCTTATCACC
TTCGGCTCTATCATGGTGTCCACCATAAAGGACTTCTCGGGCGTCGGCGA
GACCTTCACGGCCAACAGCGTGGCCATCATCATCCTGGTCCTTGGCTGCG
TAGTCTTCCTGGTAGCCTTCATGGGATGCTGCGGCGCCATACGCGAGAAT
TCCTGTGCTCTGACCTCGTACTCTGTGGTCATGCTGGTGCTGCTGGTTAG
TCAGCTAGCTCTCATTATCTACGTGTGGGTGGACCATGTGCAGATACAGC
AATCTTTGGAGAAGATCGTCCAGACCATATGGGATCAACGCAAGACCGAT
GCCCTCCTCATGGACACACTGCAGCGATCGTTCAAGTGCTGCGGCTTGAA
CGGCTTCGCTGATTACGGCATTACGTATCCCGCCTCCTGCTGCGACTCGC
CCTCCAATGGAACCTGCGCACTAACCCAAGTCATGACGCGATCCAGTTGC
CTGAAGGCCGTTGATTCCTTCTGGGACACCAACGTGAGCATCATCAAGTA
CGCTGGCCTGGGTGTGACTGCTGTTGAGCTTGTGGCCTTCATTTTCGCCT
GCTGCCTGGCCAATCAGACCCGCAACTCGCAGAGACGCCAGAACTACGCA
AGCTTTCTAGACCAT

BO15337.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-RB 684 CG12846-PB 1..681 17..697 3345 99.4 Plus
Tsp42Ed-RA 684 CG12846-PA 1..681 17..697 3345 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-RB 1248 CG12846-RB 89..769 17..697 3345 99.4 Plus
Tsp42Ed-RA 886 CG12846-RA 89..769 17..697 3345 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7010103..7010301 628..430 995 100 Minus
2R 25286936 2R 7010663..7010855 268..76 920 98.4 Minus
2R 25286936 2R 7010432..7010594 430..268 800 99.4 Minus
2R 25286936 2R 7009977..7010047 697..627 355 100 Minus
2R 25286936 2R 7011592..7011651 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:28:05 has no hits.

BO15337.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:46 Download gff for BO15337.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 1..684 17..701 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:32 Download gff for BO15337.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 198..887 8..701 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:09 Download gff for BO15337.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 89..769 17..699 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:46 Download gff for BO15337.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 198..887 8..701 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:21 Download gff for BO15337.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 89..769 17..699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:21 Download gff for BO15337.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7010663..7010854 77..268 98 <- Minus
2R 7011592..7011651 17..76 100   Minus
2R 7009975..7010045 629..699 97 <- Minus
2R 7010103..7010300 431..628 100 <- Minus
2R 7010432..7010593 269..430 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:09 Download gff for BO15337.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2897480..2897550 629..699 97 <- Minus
arm_2R 2897608..2897805 431..628 100 <- Minus
arm_2R 2897937..2898098 269..430 99 <- Minus
arm_2R 2898168..2898359 77..268 98 <- Minus
arm_2R 2899097..2899156 17..76 100   Minus

BO15337.pep Sequence

Translation from 16 to 715

> BO15337.pep
MDCGGVFVKYVLFIFNILFVICGILLITFGSIMVSTIKDFSGVGETFTAN
SVAIIILVLGCVVFLVAFMGCCGAIRENSCALTSYSVVMLVLLVSQLALI
IYVWVDHVQIQQSLEKIVQTIWDQRKTDALLMDTLQRSFKCCGLNGFADY
GITYPASCCDSPSNGTCALTQVMTRSSCLKAVDSFWDTNVSIIKYAGLGV
TAVELVAFIFACCLANQTRNSQRRQNYASFLDH

BO15337.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-PB 227 CG12846-PB 1..227 1..227 1176 100 Plus
Tsp42Ed-PA 227 CG12846-PA 1..227 1..227 1176 100 Plus
Tsp42Ea-PC 226 CG18817-PC 1..226 1..227 530 41.9 Plus
Tsp42Ea-PB 226 CG18817-PB 1..226 1..227 530 41.9 Plus
Tsp42Ea-PA 226 CG18817-PA 1..226 1..227 530 41.9 Plus