Clone Sequence Records
BO15337.3prime Sequence
713 bp (713 high quality bases) assembled on 2006-06-16
> BO15337.3prime
ATGGTCTAGAAAGCTTGCGTAGTTCTGGCGTCTCTGCGAGTTGCGGGTCT
GATTGGCCAGGCAGCAGGCGAAAATGAAGGCCACAAGCTCAACAGCAGTC
ACACCCAGGCCAGCGTACTTGATGATGCTCACGTTGGTGTCCCAGAAGGA
ATCAACGGCCTTCAGGCAACTGGATCGCGTCATGACTTGGGTTAGTGCGC
AGGTTCCATTGGAGGGCGAGTCGCAGCAGGAGGCGGGATACGTAATGCCG
TAATCAGCGAAGCCGTTCAAGCCGCAGCACTTGAACGATCGCTGCAGTGT
GTCCATGAGGAGGGCATCGGTCTTGCGTTGATCCCATATGGTCTGGACGA
TCTTCTCCAAAGATTGCTGTATCTGCACATGGTCCACCCACACGTAGATA
ATGAGAGCTAGCTGACTAACCAGCAGCACCAGCATGACCACAGAGTACGA
GGTCAGAGCACAGGAATTCTCGCGTATGGCGCCGCAGCATCCCATGAAGG
CTACCAGGAAGACTACGCAGCCAAGGACCAGGATGATGATGGCCACGCTG
TTGGCCGTGAAGGTCTCGCCGACGCCCGAGAAGTCCTTTATGGTGGACAC
CATGATAGAGCCGAAGGTGATAAGCAAAATGCCGCATATCACAAACAGTA
TGTTGAATATGAACAGCACATATTTCACAAAAACGCCGCCGCAATCCATG
TCGACTGATAACT
BO15337.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12846-PA | 684 | Tsp42Ed-RA | 1..681 | 699..19 | 3305 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ed-RB | 1248 | CG12846-RB | 89..769 | 699..19 | 3345 | 99.4 | Minus |
Tsp42Ed-RA | 886 | CG12846-RA | 89..769 | 699..19 | 3345 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7010103..7010301 | 88..286 | 995 | 100 | Plus |
2R | 25286936 | 2R | 7010663..7010855 | 448..640 | 920 | 98.4 | Plus |
2R | 25286936 | 2R | 7010432..7010594 | 286..448 | 800 | 99.4 | Plus |
2R | 25286936 | 2R | 7009977..7010047 | 19..89 | 355 | 100 | Plus |
2R | 25286936 | 2R | 7011592..7011651 | 640..699 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 05:54:09 has no hits.
BO15337.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:32 Download gff for
BO15337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12846-PA | 1..684 | 15..699 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:50 Download gff for
BO15337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12846-PA | 1..684 | 15..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:19:16 Download gff for
BO15337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 83..772 | 15..708 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:34:54 Download gff for
BO15337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 83..772 | 15..708 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:34:54 Download gff for
BO15337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7010103..7010300 | 88..285 | 100 | <- | Plus |
2R | 7009973..7010045 | 15..87 | 97 | <- | Plus |
2R | 7010432..7010593 | 286..447 | 99 | <- | Plus |
2R | 7010663..7010854 | 448..639 | 98 | <- | Plus |
2R | 7011592..7011657 | 640..708 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:19:16 Download gff for
BO15337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2897608..2897805 | 88..285 | 100 | <- | Plus |
arm_2R | 2897937..2898098 | 286..447 | 99 | <- | Plus |
arm_2R | 2898168..2898359 | 448..639 | 98 | <- | Plus |
arm_2R | 2899097..2899162 | 640..708 | 95 | | Plus |
arm_2R | 2897478..2897550 | 15..87 | 97 | <- | Plus |
BO15337.5prime Sequence
713 bp (686 high quality bases) assembled on 2006-06-16
> BO15337.5prime
GAAGTTATCAGTCGACATGGATTGCGGCGGCGTTTTTGTGAAATATGTGC
TGTTCATATTCAACATACTGTTTGTGATATGCGGCATTTTGCTTATCACC
TTCGGCTCTATCATGGTGTCCACCATAAAGGACTTCTCGGGCGTCGGCGA
GACCTTCACGGCCAACAGCGTGGCCATCATCATCCTGGTCCTTGGCTGCG
TAGTCTTCCTGGTAGCCTTCATGGGATGCTGCGGCGCCATACGCGAGAAT
TCCTGTGCTCTGACCTCGTACTCTGTGGTCATGCTGGTGCTGCTGGTTAG
TCAGCTAGCTCTCATTATCTACGTGTGGGTGGACCATGTGCAGATACAGC
AATCTTTGGAGAAGATCGTCCAGACCATATGGGATCAACGCAAGACCGAT
GCCCTCCTCATGGACACACTGCAGCGATCGTTCAAGTGCTGCGGCTTGAA
CGGCTTCGCTGATTACGGCATTACGTATCCCGCCTCCTGCTGCGACTCGC
CCTCCAATGGAACCTGCGCACTAACCCAAGTCATGACGCGATCCAGTTGC
CTGAAGGCCGTTGATTCCTTCTGGGACACCAACGTGAGCATCATCAAGTA
CGCTGGCCTGGGTGTGACTGCTGTTGAGCTTGTGGCCTTCATTTTCGCCT
GCTGCCTGGCCAATCAGACCCGCAACTCGCAGAGACGCCAGAACTACGCA
AGCTTTCTAGACC
BO15337.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12846-PA | 684 | Tsp42Ed-RA | 1..681 | 17..697 | 3305 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ed-RB | 1248 | CG12846-RB | 89..769 | 17..697 | 3345 | 99.4 | Plus |
Tsp42Ed-RA | 886 | CG12846-RA | 89..769 | 17..697 | 3345 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7010103..7010301 | 628..430 | 995 | 100 | Minus |
2R | 25286936 | 2R | 7010663..7010855 | 268..76 | 920 | 98.4 | Minus |
2R | 25286936 | 2R | 7010432..7010594 | 430..268 | 800 | 99.4 | Minus |
2R | 25286936 | 2R | 7009977..7010047 | 697..627 | 355 | 100 | Minus |
2R | 25286936 | 2R | 7011592..7011651 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:21:36 has no hits.
BO15337.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:33 Download gff for
BO15337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12846-PA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:52 Download gff for
BO15337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12846-PA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:03 Download gff for
BO15337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 83..772 | 8..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:52 Download gff for
BO15337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 83..772 | 8..701 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:52 Download gff for
BO15337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7009973..7010045 | 629..701 | 97 | <- | Minus |
2R | 7010103..7010300 | 431..628 | 100 | <- | Minus |
2R | 7010432..7010593 | 269..430 | 99 | <- | Minus |
2R | 7010663..7010854 | 77..268 | 98 | <- | Minus |
2R | 7011592..7011657 | 8..76 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:03 Download gff for
BO15337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2897478..2897550 | 629..701 | 97 | <- | Minus |
arm_2R | 2897608..2897805 | 431..628 | 100 | <- | Minus |
arm_2R | 2897937..2898098 | 269..430 | 99 | <- | Minus |
arm_2R | 2898168..2898359 | 77..268 | 98 | <- | Minus |
arm_2R | 2899097..2899162 | 8..76 | 95 | | Minus |
BO15337.complete Sequence
715 bp (715 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633416
> BO15337.complete
GAAGTTATCAGTCGACATGGATTGCGGCGGCGTTTTTGTGAAATATGTGC
TGTTCATATTCAACATACTGTTTGTGATATGCGGCATTTTGCTTATCACC
TTCGGCTCTATCATGGTGTCCACCATAAAGGACTTCTCGGGCGTCGGCGA
GACCTTCACGGCCAACAGCGTGGCCATCATCATCCTGGTCCTTGGCTGCG
TAGTCTTCCTGGTAGCCTTCATGGGATGCTGCGGCGCCATACGCGAGAAT
TCCTGTGCTCTGACCTCGTACTCTGTGGTCATGCTGGTGCTGCTGGTTAG
TCAGCTAGCTCTCATTATCTACGTGTGGGTGGACCATGTGCAGATACAGC
AATCTTTGGAGAAGATCGTCCAGACCATATGGGATCAACGCAAGACCGAT
GCCCTCCTCATGGACACACTGCAGCGATCGTTCAAGTGCTGCGGCTTGAA
CGGCTTCGCTGATTACGGCATTACGTATCCCGCCTCCTGCTGCGACTCGC
CCTCCAATGGAACCTGCGCACTAACCCAAGTCATGACGCGATCCAGTTGC
CTGAAGGCCGTTGATTCCTTCTGGGACACCAACGTGAGCATCATCAAGTA
CGCTGGCCTGGGTGTGACTGCTGTTGAGCTTGTGGCCTTCATTTTCGCCT
GCTGCCTGGCCAATCAGACCCGCAACTCGCAGAGACGCCAGAACTACGCA
AGCTTTCTAGACCAT
BO15337.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ed-RB | 684 | CG12846-PB | 1..681 | 17..697 | 3345 | 99.4 | Plus |
Tsp42Ed-RA | 684 | CG12846-PA | 1..681 | 17..697 | 3345 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ed-RB | 1248 | CG12846-RB | 89..769 | 17..697 | 3345 | 99.4 | Plus |
Tsp42Ed-RA | 886 | CG12846-RA | 89..769 | 17..697 | 3345 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7010103..7010301 | 628..430 | 995 | 100 | Minus |
2R | 25286936 | 2R | 7010663..7010855 | 268..76 | 920 | 98.4 | Minus |
2R | 25286936 | 2R | 7010432..7010594 | 430..268 | 800 | 99.4 | Minus |
2R | 25286936 | 2R | 7009977..7010047 | 697..627 | 355 | 100 | Minus |
2R | 25286936 | 2R | 7011592..7011651 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:28:05 has no hits.
BO15337.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:46 Download gff for
BO15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 1..684 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:32 Download gff for
BO15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 198..887 | 8..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:09 Download gff for
BO15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 89..769 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:46 Download gff for
BO15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 198..887 | 8..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:21 Download gff for
BO15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ed-RA | 89..769 | 17..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:21 Download gff for
BO15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7010663..7010854 | 77..268 | 98 | <- | Minus |
2R | 7011592..7011651 | 17..76 | 100 | | Minus |
2R | 7009975..7010045 | 629..699 | 97 | <- | Minus |
2R | 7010103..7010300 | 431..628 | 100 | <- | Minus |
2R | 7010432..7010593 | 269..430 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:09 Download gff for
BO15337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2897480..2897550 | 629..699 | 97 | <- | Minus |
arm_2R | 2897608..2897805 | 431..628 | 100 | <- | Minus |
arm_2R | 2897937..2898098 | 269..430 | 99 | <- | Minus |
arm_2R | 2898168..2898359 | 77..268 | 98 | <- | Minus |
arm_2R | 2899097..2899156 | 17..76 | 100 | | Minus |
BO15337.pep Sequence
Translation from 16 to 715
> BO15337.pep
MDCGGVFVKYVLFIFNILFVICGILLITFGSIMVSTIKDFSGVGETFTAN
SVAIIILVLGCVVFLVAFMGCCGAIRENSCALTSYSVVMLVLLVSQLALI
IYVWVDHVQIQQSLEKIVQTIWDQRKTDALLMDTLQRSFKCCGLNGFADY
GITYPASCCDSPSNGTCALTQVMTRSSCLKAVDSFWDTNVSIIKYAGLGV
TAVELVAFIFACCLANQTRNSQRRQNYASFLDH
BO15337.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ed-PB | 227 | CG12846-PB | 1..227 | 1..227 | 1176 | 100 | Plus |
Tsp42Ed-PA | 227 | CG12846-PA | 1..227 | 1..227 | 1176 | 100 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 1..226 | 1..227 | 530 | 41.9 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 1..226 | 1..227 | 530 | 41.9 | Plus |
Tsp42Ea-PA | 226 | CG18817-PA | 1..226 | 1..227 | 530 | 41.9 | Plus |