Clone Sequence Records
BO15340.3prime Sequence
611 bp (610 high quality bases) assembled on 2006-06-16
> BO15340.3prime
ATGGTCTAGAAAGCTTGCGTGCCTTGTGCGCTCCACAGTTCGCCCCCGAT
CGAGTAGCTCCCGGAAGGTTTTGACCTCGTGTCGGGGTATGCTCTCCCGG
TACTTGGGCTGCATCAGCCCGTAGATGAAGTCAAGCTCCGTCTCCTCGTC
GTGTCGTCCCTCCGGCAACTTGGCTAGGAGCGCTCGCTGCTTGCAGATGA
ATGAGTCGATCACCTCGTCGTAGGACTGCTTCGTCTCGAAGATCTCCATG
TATATCTGGTAGGAAGGTTTAGTGGGCGAGAAGTGATCGCGCAGCAGCTG
CAGGGCATCCGACCAGGTCTTGGCATCCCGGCGCACACCCTTCCACCACA
CCACGGCAATGCTCTTGAAGAGCAGCGGCAAACCCTTTAGCGCATCTTTG
TCGCTGATGCCCTCCACCTCTTTATACGTCTCCACGGCATTGATGAACTC
GTCCACGGCATCGTGATCCCGCTGGCCACTGAATCTCACCGTGCAGTTGC
TAAAGCTACCCTTGGATGGCGGTTCCTCTTTGATTGGCCCCAGCGATTTA
ATGGTTTCTATGAATATGCGAAACTGTTCGTCGGACATCTGCGTCATGTC
GACTGATAACT
BO15340.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13941-PA | 582 | CG13941-RA | 1..579 | 597..19 | 2820 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arc2-RA | 902 | CG13941-RA | 117..695 | 597..19 | 2850 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14362040..14362618 | 597..19 | 2850 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:48:45 has no hits.
BO15340.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:34 Download gff for
BO15340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13941-PA | 1..582 | 16..597 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:54 Download gff for
BO15340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13941-PA | 1..582 | 16..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:36 Download gff for
BO15340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 110..702 | 11..605 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:50:29 Download gff for
BO15340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 110..702 | 11..605 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:50:29 Download gff for
BO15340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14362033..14362625 | 11..605 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:36 Download gff for
BO15340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10249538..10250130 | 11..605 | 98 | | Minus |
BO15340.5prime Sequence
611 bp (610 high quality bases) assembled on 2006-06-16
> BO15340.5prime
GAAGTTATCAGTCGACATGACGCAGATGTCCGACGAACAGTTTCGCATAT
TCATAGAAACCATTAAATCGCTGGGGCCAATCAAAGAGGAACCGCCATCC
AAGGGTAGCTTTAGCAACTGCACGGTGAGATTCAGTGGCCAGCGGGATCA
CGATGCCGTGGACGAGTTCATCAATGCCGTGGAGACGTATAAAGAGGTGG
AGGGCATCAGCGACAAAGATGCGCTAAAGGGTTTGCCGCTGCTCTTCAAG
AGCATTGCCGTGGTGTGGTGGAAGGGTGTGCGCCGGGATGCCAAGACCTG
GTCGGATGCCCTGCAGCTGCTGCGCGATCACTTCTCGCCCACTAAACCTT
CCTACCAGATATACATGGAGATCTTCGAGACGAAGCAGTCCTACGACGAG
GTGATCGACTCATTCATCTGCAAGCAGCGAGCGCTCCTAGCCAAGTTGCC
GGAGGGACGACACGACGAGGAGACGGAGCTTGACTTCATCTACGGGCTGA
TGCAGCCCAAGTACCGGGAGAGCATACCCCGACACGAGGTCAAAACCTTC
CGGGAGCTACTCGATCGGGGGCGAACTGTGGAGCGCACAAGGCACGCAAG
CTTTCTAGACC
BO15340.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13941-PA | 582 | CG13941-RA | 1..579 | 17..595 | 2820 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arc2-RA | 902 | CG13941-RA | 117..695 | 17..595 | 2850 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14362040..14362618 | 17..595 | 2850 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-02 07:45:56 has no hits.
BO15340.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:35 Download gff for
BO15340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13941-PA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:55 Download gff for
BO15340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13941-PA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:58 Download gff for
BO15340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 110..702 | 9..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:51 Download gff for
BO15340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 110..702 | 9..603 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:51 Download gff for
BO15340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14362033..14362625 | 9..603 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:58 Download gff for
BO15340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10249538..10250130 | 9..603 | 98 | | Plus |
BO15340.complete Sequence
613 bp (613 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633417
> BO15340.complete
GAAGTTATCAGTCGACATGACGCAGATGTCCGACGAACAGTTTCGCATAT
TCATAGAAACCATTAAATCGCTGGGGCCAATCAAAGAGGAACCGCCATCC
AAGGGTAGCTTTAGCAACTGCACGGTGAGATTCAGTGGCCAGCGGGATCA
CGATGCCGTGGACGAGTTCATCAATGCCGTGGAGACGTATAAAGAGGTGG
AGGGCATCAGCGACAAAGATGCGCTAAAGGGTTTGCCGCTGCTCTTCAAG
AGCATTGCCGTGGTGTGGTGGAAGGGTGTGCGCCGGGATGCCAAGACCTG
GTCGGATGCCCTGCAGCTGCTGCGCGATCACTTCTCGCCCACTAAACCTT
CCTACCAGATATACATGGAGATCTTCGAGACGAAGCAGTCCTACGACGAG
GTGATCGACTCATTCATCTGCAAGCAGCGAGCGCTCCTAGCCAAGTTGCC
GGAGGGACGACACGACGAGGAGACGGAGCTTGACTTCATCTACGGGCTGA
TGCAGCCCAAGTACCGGGAGAGCATACCCCGACACGAGGTCAAAACCTTC
CGGGAGCTACTCGATCGGGGGCGAACTGTGGAGCGCACAAGGCACGCAAG
CTTTCTAGACCAT
BO15340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arc2-RA | 582 | CG13941-PA | 1..579 | 17..595 | 2850 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arc2-RA | 902 | CG13941-RA | 117..695 | 17..595 | 2850 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14362040..14362618 | 17..595 | 2850 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:04:19 has no hits.
BO15340.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:29 Download gff for
BO15340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:37 Download gff for
BO15340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 90..682 | 9..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:06 Download gff for
BO15340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 117..695 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:29 Download gff for
BO15340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 90..682 | 9..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:03 Download gff for
BO15340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc2-RA | 117..695 | 17..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:03 Download gff for
BO15340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14362040..14362618 | 17..597 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:06 Download gff for
BO15340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10249545..10250123 | 17..597 | 99 | | Plus |
BO15340.pep Sequence
Translation from 16 to 613
> BO15340.pep
MTQMSDEQFRIFIETIKSLGPIKEEPPSKGSFSNCTVRFSGQRDHDAVDE
FINAVETYKEVEGISDKDALKGLPLLFKSIAVVWWKGVRRDAKTWSDALQ
LLRDHFSPTKPSYQIYMEIFETKQSYDEVIDSFICKQRALLAKLPEGRHD
EETELDFIYGLMQPKYRESIPRHEVKTFRELLDRGRTVERTRHASFLDH
BO15340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arc2-PA | 193 | CG13941-PA | 1..193 | 1..193 | 1012 | 100 | Plus |
| Arc1-PA | 254 | CG12505-PA | 4..202 | 1..189 | 568 | 53.3 | Plus |
