Clone Sequence Records
BO15343.3prime Sequence
942 bp (826 high quality bases) assembled on 2006-06-16
> BO15343.3prime
ATGGTCTAGAAAGCTTGCCCAGTGTGCATTTCGTCGGATGACAACCTCAC
GGACTATGTCGGCATGATTGGCGTGCAGCTTGAGATTCGAGTCGACGTCC
GTCCAGCGCACATTGGAGGCATCGTCACCGGCCATTAGCTCCAATTGTCC
CACCTGGCTCCCGTCTTCATCGTGGAAGTTCAGCGCAGTGGTTTCCATCC
AAGCGTTGTCCGTGTTTCGAAAATCGTCTACGTAGCCTTGGTATACCTGA
ACGCCTCCCGCTTGAAAAAATCGCTCAACCATGTTGGCTTTGTCCGTGAA
ATTCAATGCCTCCTCGGTGAACTCCCGCTTAAGGGTGACACTGACATTCT
CGCCGGGATCGACCATTCCACCGGGAATGGCCCACAACTTGTTGTCGGAC
CGCTGTATGGCAACCATCTGTATGATATTCTTGCCGGTTGTCGGGTTGGC
CACAATTGCTCCTTGGTCGTCACGCTTCCAGCGCGTGACGATTGGATCTG
CGGCATGATTTGGACCCCATCTGCCTAGCGAACCACGTCCGGTTAGTCCG
GTACGCCCGATCGGATTTAGGGGCAGTCCATTCTGCACGTTGTAGGCACC
GTGAAAGGATTCGCGGTTTACCTGTCCATCCAGCTGATTCCACTGTGGCC
AGAATGTGTCGCTGGGCAACGGCGGATCAGCCCACACCTGCCCGCCAATA
TGTGGCGCCGTGTACGCAGGCGGGCAGTAGTCCGGGAACGGCTCCGACCA
GAAGACCTGTTCGTCGGAAACTGGGTACCGGAGGACTGAGCTGCGCGGAT
ACATGTTGTTGCGGCACATTAGGTGCCGGAAAATGCCCGGCTTCACCAGC
GATGAAATCATTTGGGCGGAGGTTAGCGGGTTTTCCAGGATCAGTGGCAA
AAACAGAAGCGGCAGCAGTGCAAACTCGAAACTCGTCATGTC
BO15343.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-PA | 924 | CG4098-RA | 1..921 | 939..19 | 4580 | 99.8 | Minus |
CG18217-PA | 1797 | CG18217-RA | 1298..1794 | 515..19 | 2435 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-RA | 1154 | CG4098-RA | 141..1061 | 939..19 | 4590 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16608698..16609207 | 430..939 | 2535 | 99.8 | Plus |
3L | 28110227 | 3L | 16600544..16600959 | 19..434 | 2065 | 99.8 | Plus |
3L | 28110227 | 3L | 16608231..16608646 | 19..434 | 2065 | 99.8 | Plus |
3L | 28110227 | 3L | 16601007..16601092 | 430..515 | 400 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:32:14 has no hits.
BO15343.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:38 Download gff for
BO15343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-PA | 1..924 | 18..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:59 Download gff for
BO15343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-PA | 1..924 | 18..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:49:24 Download gff for
BO15343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 139..1061 | 19..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:06:52 Download gff for
BO15343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 139..1061 | 19..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:06:52 Download gff for
BO15343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16608231..16608642 | 19..430 | 100 | <- | Plus |
3L | 16608699..16609208 | 431..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:49:24 Download gff for
BO15343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16601331..16601742 | 19..430 | 100 | <- | Plus |
arm_3L | 16601799..16602308 | 431..942 | 99 | | Plus |
BO15343.5prime Sequence
929 bp (773 high quality bases) assembled on 2006-06-16
> BO15343.5prime
GAAGTTATCACTCGACATGACGAGTTTCGAGTTTGCACTGCTGCCGCTTC
TGTTTTTGCCACTGATCCTGGAAAACCCGCTAACCTCCGCCCAAATGATG
TCATCGCTGGTGAAGCCGGGCATTTTCCGGCACCTAATGTGCCGCAACAA
CATGTATCCGCGCAGCTCAGTCCTCCGGTACCCAGTTTCCGACGAACAGG
TCTTCTGGTCGGAGCCGTTCCCGGACTACTGCCCGCCTGCGTACACGGCG
CCACATATTGGCGGGCAGGTGTGGGCTGATCCGCCGTTGCCCAGCGACAC
ATTCTGGCCACAGTGGAATCAGCTGGATGGACAGGTAAACCGCGAATCCT
TTCACGGTGCCTACAACGTGCAGAATGGACTGCCCCTAAATCCGATCGGG
CGTACCGGACTAACCGGACGTGGTTCGCTAGGCAGATGGGGTCCAAATCA
TGCCGCAGATCCAATCGTCACGCGCTGGAAGCGTGACGACCAAGGAGCAA
TTGTGGCCAACCCGACAACCGGCAAGAATATCATACAGATGGTTGCCATA
CAGCGGTCCGACAACAAGTTGTGGGCCATTCCCGGTGGAATGGTCGATCC
CGGCGAGAATGTCAGTGTCACCCTTAAGCGGGAGTTCACCGAGGAGGCAT
TGAATTTCACGGACAAAGCCAACATGGTTGAGCGATTTTTTCAAGCGGGA
GGCGTTCAGGTATACCAAGGCTACGTAGACGATTTTCGAAACACGGACAA
CGCTTGGATGGAAACCACTGCGCTGAACTTCCACGATGAAGACGGGAGCC
AGGTGGGACAATTGGAGCTAATGGCCGGTGACGATGCCTCCAATGTGCGC
TGGACGGACGTCGACTCGAATCTCAAGCTGCACGCCAATCATGCCGACAT
AGTCCGTGAGGTTGTCATCCGACAAAATG
BO15343.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-PA | 924 | CG4098-RA | 1..913 | 17..929 | 4540 | 99.8 | Plus |
CG18217-PA | 1797 | CG18217-RA | 1298..1786 | 441..929 | 2370 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-RA | 1154 | CG4098-RA | 141..1053 | 17..929 | 4550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16608698..16609207 | 526..17 | 2550 | 100 | Minus |
3L | 28110227 | 3L | 16600552..16600959 | 929..522 | 2010 | 99.5 | Minus |
3L | 28110227 | 3L | 16608239..16608646 | 929..522 | 2010 | 99.5 | Minus |
3L | 28110227 | 3L | 16601007..16601092 | 526..441 | 400 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:02:15 has no hits.
BO15343.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:40 Download gff for
BO15343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:01 Download gff for
BO15343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:27 Download gff for
BO15343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 133..1053 | 8..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:42 Download gff for
BO15343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 133..1053 | 8..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:42 Download gff for
BO15343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16608239..16608642 | 526..929 | 99 | <- | Minus |
3L | 16608699..16609215 | 8..525 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:27 Download gff for
BO15343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16601339..16601742 | 526..929 | 99 | <- | Minus |
arm_3L | 16601799..16602315 | 8..525 | 99 | | Minus |
BO15343.complete Sequence
955 bp (955 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633418
> BO15343.complete
GAAGTTATCAGTCGACATGACGAGTTTCGAGTTTGCACTGCTGCCGCTTC
TGTTTTTGCCACTGATCCTGGAAAACCCGCTAACCTCCGCCCAAATGATG
TCATCGCTGGTGAAGCCGGGCATTTTCCGGCACCTAATGTGCCGCAACAA
CATGTATCCGCGCAGCTCAGTCCTCCGGTACCCAGTTTCCGACGAACAGG
TCTTCTGGTCGGAGCCGTTCCCGGACTACTGCCCGCCTGCGTACACGGCG
CCACATATTGGCGGGCAGGTGTGGGCTGATCCGCCGTTGCCCAGCGACAC
ATTCTGGCCACAGTGGAATCAGCTGGATGGACAGGTAAACCGCGAATCCT
TTCACGGTGCCTACAACGTGCAGAATGGACTGCCCCTAAATCCGATCGGG
CGTACCGGACTAACCGGACGTGGTTCGCTAGGCAGATGGGGTCCAAATCA
TGCCGCAGATCCAATCGTCACGCGCTGGAAGCGTGACGACCAAGGAGCAA
TTGTGGCCAACCCGACAACCGGCAAGAATATCATACAGATGGTTGCCATA
CAGCGGTCCGACAACAAGTTGTGGGCCATTCCCGGTGGAATGGTCGATCC
CGGCGAGAATGTCAGTGTCACCCTTAAGCGGGAGTTCACCGAGGAGGCAT
TGAATTTCACGGACAAAGCCAACATGGTTGAGCGATTTTTTCAAGCGGGA
GGCGTTCAGGTATACCAAGGCTACGTAGACGATTTTCGAAACACGGACAA
CGCTTGGATGGAAACCACTGCGCTGAACTTCCACGATGAAGACGGGAGCC
AGGTGGGACAATTGGAGCTAATGGCCGGTGACGATGCCTCCAATGTGCGC
TGGACGGACGTCGACTCGAATCTCAAGCTGCACGCCAATCATGCCGACAT
AGTCCGTGAGGTTGTCATCCGACGAAATGCACACTGGGCAAGCTTTCTAG
ACCAT
BO15343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-RA | 924 | CG4098-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-RA | 1154 | CG4098-RA | 141..1061 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16608698..16609207 | 526..17 | 2550 | 100 | Minus |
3L | 28110227 | 3L | 16600544..16600959 | 937..522 | 2065 | 99.8 | Minus |
3L | 28110227 | 3L | 16608231..16608646 | 937..522 | 2065 | 99.8 | Minus |
3L | 28110227 | 3L | 16601007..16601092 | 526..441 | 400 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:48:37 has no hits.
BO15343.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:36 Download gff for
BO15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 1..924 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:24 Download gff for
BO15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 1..934 | 3..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:57 Download gff for
BO15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 141..1061 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:36 Download gff for
BO15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 1..934 | 3..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:57 Download gff for
BO15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4098-RA | 141..1061 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:57 Download gff for
BO15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16608229..16608642 | 526..939 | 99 | <- | Minus |
3L | 16608699..16609207 | 17..525 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:57 Download gff for
BO15343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16601329..16601742 | 526..939 | 99 | <- | Minus |
arm_3L | 16601799..16602307 | 17..525 | 100 | | Minus |
BO15343.pep Sequence
Translation from 16 to 955
> BO15343.pep
MTSFEFALLPLLFLPLILENPLTSAQMMSSLVKPGIFRHLMCRNNMYPRS
SVLRYPVSDEQVFWSEPFPDYCPPAYTAPHIGGQVWADPPLPSDTFWPQW
NQLDGQVNRESFHGAYNVQNGLPLNPIGRTGLTGRGSLGRWGPNHAADPI
VTRWKRDDQGAIVANPTTGKNIIQMVAIQRSDNKLWAIPGGMVDPGENVS
VTLKREFTEEALNFTDKANMVERFFQAGGVQVYQGYVDDFRNTDNAWMET
TALNFHDEDGSQVGQLELMAGDDASNVRWTDVDSNLKLHANHADIVREVV
IRRNAHWASFLDH
BO15343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4098-PA | 307 | CG4098-PA | 1..307 | 1..307 | 1667 | 100 | Plus |