Clone BO15343 Report

Search the DGRC for BO15343

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG4098-RA
Protein status:BO15343.pep: validated full length
Sequenced Size:955

Clone Sequence Records

BO15343.3prime Sequence

942 bp (826 high quality bases) assembled on 2006-06-16

> BO15343.3prime
ATGGTCTAGAAAGCTTGCCCAGTGTGCATTTCGTCGGATGACAACCTCAC
GGACTATGTCGGCATGATTGGCGTGCAGCTTGAGATTCGAGTCGACGTCC
GTCCAGCGCACATTGGAGGCATCGTCACCGGCCATTAGCTCCAATTGTCC
CACCTGGCTCCCGTCTTCATCGTGGAAGTTCAGCGCAGTGGTTTCCATCC
AAGCGTTGTCCGTGTTTCGAAAATCGTCTACGTAGCCTTGGTATACCTGA
ACGCCTCCCGCTTGAAAAAATCGCTCAACCATGTTGGCTTTGTCCGTGAA
ATTCAATGCCTCCTCGGTGAACTCCCGCTTAAGGGTGACACTGACATTCT
CGCCGGGATCGACCATTCCACCGGGAATGGCCCACAACTTGTTGTCGGAC
CGCTGTATGGCAACCATCTGTATGATATTCTTGCCGGTTGTCGGGTTGGC
CACAATTGCTCCTTGGTCGTCACGCTTCCAGCGCGTGACGATTGGATCTG
CGGCATGATTTGGACCCCATCTGCCTAGCGAACCACGTCCGGTTAGTCCG
GTACGCCCGATCGGATTTAGGGGCAGTCCATTCTGCACGTTGTAGGCACC
GTGAAAGGATTCGCGGTTTACCTGTCCATCCAGCTGATTCCACTGTGGCC
AGAATGTGTCGCTGGGCAACGGCGGATCAGCCCACACCTGCCCGCCAATA
TGTGGCGCCGTGTACGCAGGCGGGCAGTAGTCCGGGAACGGCTCCGACCA
GAAGACCTGTTCGTCGGAAACTGGGTACCGGAGGACTGAGCTGCGCGGAT
ACATGTTGTTGCGGCACATTAGGTGCCGGAAAATGCCCGGCTTCACCAGC
GATGAAATCATTTGGGCGGAGGTTAGCGGGTTTTCCAGGATCAGTGGCAA
AAACAGAAGCGGCAGCAGTGCAAACTCGAAACTCGTCATGTC

BO15343.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-PA 924 CG4098-RA 1..921 939..19 4580 99.8 Minus
CG18217-PA 1797 CG18217-RA 1298..1794 515..19 2435 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-RA 1154 CG4098-RA 141..1061 939..19 4590 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16608698..16609207 430..939 2535 99.8 Plus
3L 28110227 3L 16600544..16600959 19..434 2065 99.8 Plus
3L 28110227 3L 16608231..16608646 19..434 2065 99.8 Plus
3L 28110227 3L 16601007..16601092 430..515 400 97.7 Plus
Blast to na_te.dros performed on 2015-02-10 18:32:14 has no hits.

BO15343.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:38 Download gff for BO15343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-PA 1..924 18..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:47:59 Download gff for BO15343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-PA 1..924 18..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:49:24 Download gff for BO15343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 139..1061 19..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:06:52 Download gff for BO15343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 139..1061 19..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:06:52 Download gff for BO15343.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16608231..16608642 19..430 100 <- Plus
3L 16608699..16609208 431..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:49:24 Download gff for BO15343.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16601331..16601742 19..430 100 <- Plus
arm_3L 16601799..16602308 431..942 99   Plus

BO15343.5prime Sequence

929 bp (773 high quality bases) assembled on 2006-06-16

> BO15343.5prime
GAAGTTATCACTCGACATGACGAGTTTCGAGTTTGCACTGCTGCCGCTTC
TGTTTTTGCCACTGATCCTGGAAAACCCGCTAACCTCCGCCCAAATGATG
TCATCGCTGGTGAAGCCGGGCATTTTCCGGCACCTAATGTGCCGCAACAA
CATGTATCCGCGCAGCTCAGTCCTCCGGTACCCAGTTTCCGACGAACAGG
TCTTCTGGTCGGAGCCGTTCCCGGACTACTGCCCGCCTGCGTACACGGCG
CCACATATTGGCGGGCAGGTGTGGGCTGATCCGCCGTTGCCCAGCGACAC
ATTCTGGCCACAGTGGAATCAGCTGGATGGACAGGTAAACCGCGAATCCT
TTCACGGTGCCTACAACGTGCAGAATGGACTGCCCCTAAATCCGATCGGG
CGTACCGGACTAACCGGACGTGGTTCGCTAGGCAGATGGGGTCCAAATCA
TGCCGCAGATCCAATCGTCACGCGCTGGAAGCGTGACGACCAAGGAGCAA
TTGTGGCCAACCCGACAACCGGCAAGAATATCATACAGATGGTTGCCATA
CAGCGGTCCGACAACAAGTTGTGGGCCATTCCCGGTGGAATGGTCGATCC
CGGCGAGAATGTCAGTGTCACCCTTAAGCGGGAGTTCACCGAGGAGGCAT
TGAATTTCACGGACAAAGCCAACATGGTTGAGCGATTTTTTCAAGCGGGA
GGCGTTCAGGTATACCAAGGCTACGTAGACGATTTTCGAAACACGGACAA
CGCTTGGATGGAAACCACTGCGCTGAACTTCCACGATGAAGACGGGAGCC
AGGTGGGACAATTGGAGCTAATGGCCGGTGACGATGCCTCCAATGTGCGC
TGGACGGACGTCGACTCGAATCTCAAGCTGCACGCCAATCATGCCGACAT
AGTCCGTGAGGTTGTCATCCGACAAAATG

BO15343.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-PA 924 CG4098-RA 1..913 17..929 4540 99.8 Plus
CG18217-PA 1797 CG18217-RA 1298..1786 441..929 2370 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-RA 1154 CG4098-RA 141..1053 17..929 4550 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16608698..16609207 526..17 2550 100 Minus
3L 28110227 3L 16600552..16600959 929..522 2010 99.5 Minus
3L 28110227 3L 16608239..16608646 929..522 2010 99.5 Minus
3L 28110227 3L 16601007..16601092 526..441 400 97.7 Minus
Blast to na_te.dros performed on 2015-02-09 11:02:15 has no hits.

BO15343.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:40 Download gff for BO15343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-PA 1..913 17..929 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:01 Download gff for BO15343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-PA 1..913 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:27 Download gff for BO15343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 133..1053 8..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:42 Download gff for BO15343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 133..1053 8..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:42 Download gff for BO15343.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16608239..16608642 526..929 99 <- Minus
3L 16608699..16609215 8..525 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:27 Download gff for BO15343.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16601339..16601742 526..929 99 <- Minus
arm_3L 16601799..16602315 8..525 99   Minus

BO15343.complete Sequence

955 bp (955 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633418

> BO15343.complete
GAAGTTATCAGTCGACATGACGAGTTTCGAGTTTGCACTGCTGCCGCTTC
TGTTTTTGCCACTGATCCTGGAAAACCCGCTAACCTCCGCCCAAATGATG
TCATCGCTGGTGAAGCCGGGCATTTTCCGGCACCTAATGTGCCGCAACAA
CATGTATCCGCGCAGCTCAGTCCTCCGGTACCCAGTTTCCGACGAACAGG
TCTTCTGGTCGGAGCCGTTCCCGGACTACTGCCCGCCTGCGTACACGGCG
CCACATATTGGCGGGCAGGTGTGGGCTGATCCGCCGTTGCCCAGCGACAC
ATTCTGGCCACAGTGGAATCAGCTGGATGGACAGGTAAACCGCGAATCCT
TTCACGGTGCCTACAACGTGCAGAATGGACTGCCCCTAAATCCGATCGGG
CGTACCGGACTAACCGGACGTGGTTCGCTAGGCAGATGGGGTCCAAATCA
TGCCGCAGATCCAATCGTCACGCGCTGGAAGCGTGACGACCAAGGAGCAA
TTGTGGCCAACCCGACAACCGGCAAGAATATCATACAGATGGTTGCCATA
CAGCGGTCCGACAACAAGTTGTGGGCCATTCCCGGTGGAATGGTCGATCC
CGGCGAGAATGTCAGTGTCACCCTTAAGCGGGAGTTCACCGAGGAGGCAT
TGAATTTCACGGACAAAGCCAACATGGTTGAGCGATTTTTTCAAGCGGGA
GGCGTTCAGGTATACCAAGGCTACGTAGACGATTTTCGAAACACGGACAA
CGCTTGGATGGAAACCACTGCGCTGAACTTCCACGATGAAGACGGGAGCC
AGGTGGGACAATTGGAGCTAATGGCCGGTGACGATGCCTCCAATGTGCGC
TGGACGGACGTCGACTCGAATCTCAAGCTGCACGCCAATCATGCCGACAT
AGTCCGTGAGGTTGTCATCCGACGAAATGCACACTGGGCAAGCTTTCTAG
ACCAT

BO15343.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-RA 924 CG4098-PA 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-RA 1154 CG4098-RA 141..1061 17..937 4605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16608698..16609207 526..17 2550 100 Minus
3L 28110227 3L 16600544..16600959 937..522 2065 99.8 Minus
3L 28110227 3L 16608231..16608646 937..522 2065 99.8 Minus
3L 28110227 3L 16601007..16601092 526..441 400 97.7 Minus
Blast to na_te.dros performed on 2014-11-27 06:48:37 has no hits.

BO15343.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:36 Download gff for BO15343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..924 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:24 Download gff for BO15343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..934 3..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:57 Download gff for BO15343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 141..1061 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:36 Download gff for BO15343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..934 3..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:57 Download gff for BO15343.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 141..1061 17..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:57 Download gff for BO15343.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16608229..16608642 526..939 99 <- Minus
3L 16608699..16609207 17..525 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:57 Download gff for BO15343.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16601329..16601742 526..939 99 <- Minus
arm_3L 16601799..16602307 17..525 100   Minus

BO15343.pep Sequence

Translation from 16 to 955

> BO15343.pep
MTSFEFALLPLLFLPLILENPLTSAQMMSSLVKPGIFRHLMCRNNMYPRS
SVLRYPVSDEQVFWSEPFPDYCPPAYTAPHIGGQVWADPPLPSDTFWPQW
NQLDGQVNRESFHGAYNVQNGLPLNPIGRTGLTGRGSLGRWGPNHAADPI
VTRWKRDDQGAIVANPTTGKNIIQMVAIQRSDNKLWAIPGGMVDPGENVS
VTLKREFTEEALNFTDKANMVERFFQAGGVQVYQGYVDDFRNTDNAWMET
TALNFHDEDGSQVGQLELMAGDDASNVRWTDVDSNLKLHANHADIVREVV
IRRNAHWASFLDH

BO15343.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-PA 307 CG4098-PA 1..307 1..307 1667 100 Plus