Clone BO15347 Report

Search the DGRC for BO15347

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:47
Vector:pDNR-Dual
Associated Gene/Transcriptpirk-RA
Protein status:BO15347.pep: validated full length
Sequenced Size:625

Clone Sequence Records

BO15347.3prime Sequence

623 bp (622 high quality bases) assembled on 2006-06-16

> BO15347.3prime
ATGGTCTAGAAAGCTTGCGATGCTCACGTTGATGGCATTCTTGATCACAA
TGTTCCCGGCTCCGTGCCGTATCGTTAGATTGCTGTCGATCTCAATGCCG
CCGGACTTGCCTTGGCCAGCATCCGTTGGCGTTGGCTTGGCGTTTTTCGA
TCGAGAGCTGGGCCTTTTCTTGGCATCGCCGCTAAGATCCAGGGACTTGA
CCACCTTGAGCAGTCCATTGCAGCCCGTGTAGTCGACCACCTGCTGCGTG
GAGCTGCTGCCCAGGTAGATCCTACCGTCGTTACCCGTGTACTTGAGGGC
TCCGCTATTGTTCTGAATCTTGAGTCGGGTGCTATTGCCGATTACTTGCA
GTTGCCCGGAGTTGTTCACAATACGTATGCGGTTGCCATTGCCGATGATC
CTGAGATCGCGCGTGTTGTTCTCAATGCGGTACTCCTTGCAGTTGCCCAC
CAGATCCTTGCTGGCGTAGATGGTTGTCTCCGGCGGCGTGGAACTTTTCT
TGCTCTTATTGGGGGATTTACCCTGCTCGTGCTCTTTCTGGCAAGTGGAG
CACTCGTCATCGTCATACGAATCGCTCGCCGAATCGGTTTCTATCACACG
AACGCCCATGTCGACTGATAACT

BO15347.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15678-PA 594 CG15678-RA 1..591 609..19 2855 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
pirk-RB 1846 CG15678-RB 896..1486 609..19 2895 99.3 Minus
pirk-RA 1301 CG15678-RA 351..941 609..19 2895 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21661327..21661917 19..609 2895 99.3 Plus
Blast to na_te.dros performed on 2015-01-30 18:39:22 has no hits.

BO15347.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:45 Download gff for BO15347.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15678-PA 1..594 16..609 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:08 Download gff for BO15347.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15678-PA 1..594 16..609 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:00:43 Download gff for BO15347.3prime
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 344..951 11..617 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:13:43 Download gff for BO15347.3prime
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 344..951 11..617 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:13:43 Download gff for BO15347.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21661317..21661924 11..617 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:00:43 Download gff for BO15347.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17548822..17549429 11..617 98   Plus

BO15347.5prime Sequence

623 bp (622 high quality bases) assembled on 2006-06-16

> BO15347.5prime
GAAGTTATCAGTCGACATGGGCGTTCGTGTGATAGAAACCGATTCGGCGA
GCGATTCGTATGACGATGACGAGTGCTCCACTTGCCAGAAAGAGCACGAG
CAGGGTAAATCCCCCAATAAGAGCAAGAAAAGTTCCACGCCGCCGGAGAC
AACCATCTACGCCAGCAAGGATCTGGTGGGCAACTGCAAGGAGTACCGCA
TTGAGAACAACACGCGCGATCTCAGGATCATCGGCAATGGCAACCGCATA
CGTATTGTGAACAACTCCGGGCAACTGCAAGTAATCGGCAATAGCACCCG
ACTCAAGATTCAGAACAATAGCGGAGCCCTCAAGTACACGGGTAACGACG
GTAGGATCTACCTGGGCAGCAGCTCCACGCAGCAGGTGGTCGACTACACG
GGCTGCAATGGACTGCTCAAGGTGGTCAAGTCCCTGGATCTTAGCGGCGA
TGCCAAGAAAAGGCCCAGCTCTCGATCGAAAAACGCCAAGCCAACGCCAA
CGGATGCTGGCCAAGGCAAGTCCGGCGGCATTGAGATCGACAGCAATCTA
ACGATACGGCACGGAGCCGGGAACATTGTGATCAAGAATGCCATCAACGT
GAGCATCGCAAGCTTTCTAGACC

BO15347.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG15678-PA 594 CG15678-RA 1..591 17..607 2855 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
pirk-RB 1846 CG15678-RB 896..1486 17..607 2895 99.3 Plus
pirk-RA 1301 CG15678-RA 351..941 17..607 2895 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21661327..21661917 607..17 2895 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 05:11:41 has no hits.

BO15347.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:46 Download gff for BO15347.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15678-PA 1..594 17..610 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:10 Download gff for BO15347.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15678-PA 1..594 17..610 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:51 Download gff for BO15347.5prime
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 344..951 9..615 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:45 Download gff for BO15347.5prime
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 344..951 9..615 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:45 Download gff for BO15347.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21661317..21661924 9..615 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:51 Download gff for BO15347.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17548822..17549429 9..615 98   Minus

BO15347.complete Sequence

625 bp assembled on 2007-10-17

GenBank Submission: FJ633420

> BO15347.complete
GAAGTTATCAGTCGACATGGGCGTTCGTGTGATAGAAACCGATTCGGCGA
GCGATTCGTATGACGATGACGAGTGCTCCACTTGCCAGAAAGAGCACGAG
CAGGGTAAATCCCCCAATAAGAGCAAGAAAAGTTCCACGCCGCCGGAGAC
AACCATCTACGCCAGCAAGGATCTGGTGGGCAACTGCAAGGAGTACCGCA
TTGAGAACAACACGCGCGATCTCAGGATCATCGGCAATGGCAACCGCATA
CGTATTGTGAACAACTCCGGGCAACTGCAAGTAATCGGCAATAGCACCCG
ACTCAAGATTCAGAACAATAGCGGAGCCCTCAAGTACACGGGTAACGACG
GTAGGATCTACCTGGGCAGCAGCTCCACGCAGCAGGTGGTCGACTACACG
GGCTGCAATGGACTGCTCAAGGTGGTCAAGTCCCTGGATCTTAGCGGCGA
TGCCAAGAAAAGGCCCAGCTCTCGATCGAAAAACGCCAAGCCAACGCCAA
CGGATGCTGGCCAAGGCAAGTCCGGCGGCATTGAGATCGACAGCAATCTA
ACGATACGGCACGGAGCCGGGAACATTGTGATCAAGAATGCCATCAACGT
GAGCATCGCAAGCTTTCTAGACCAT

BO15347.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
pirk-RB 594 CG15678-PB 1..591 17..607 2895 99.3 Plus
pirk-RA 594 CG15678-PA 1..591 17..607 2895 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
pirk-RB 1846 CG15678-RB 896..1486 17..607 2895 99.3 Plus
pirk-RA 1301 CG15678-RA 351..941 17..607 2895 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21661327..21661917 607..17 2895 99.3 Minus
Blast to na_te.dros performed on 2014-11-26 16:21:02 has no hits.

BO15347.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:49 Download gff for BO15347.complete
Subject Subject Range Query Range Percent Splice Strand
CG15678-RA 1..594 17..610 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:15 Download gff for BO15347.complete
Subject Subject Range Query Range Percent Splice Strand
CG15678-RA 321..928 9..615 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:36 Download gff for BO15347.complete
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 351..941 17..609 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:46 Download gff for BO15347.complete
Subject Subject Range Query Range Percent Splice Strand
CG15678-RA 328..918 17..609 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:01 Download gff for BO15347.complete
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 351..941 17..609 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:01 Download gff for BO15347.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21661324..21661917 17..609 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:36 Download gff for BO15347.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17548829..17549422 17..609 98   Minus

BO15347.pep Sequence

Translation from 16 to 625

> BO15347.pep
MGVRVIETDSASDSYDDDECSTCQKEHEQGKSPNKSKKSSTPPETTIYAS
KDLVGNCKEYRIENNTRDLRIIGNGNRIRIVNNSGQLQVIGNSTRLKIQN
NSGALKYTGNDGRIYLGSSSTQQVVDYTGCNGLLKVVKSLDLSGDAKKRP
SSRSKNAKPTPTDAGQGKSGGIEIDSNLTIRHGAGNIVIKNAINVSIASF
LDH

BO15347.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
pirk-PB 197 CG15678-PB 1..197 1..197 1012 100 Plus
pirk-PA 197 CG15678-PA 1..197 1..197 1012 100 Plus